RLG00000010311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000270
Physical Location & Seq
Reverse (-)
520240 .. 521350
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010311

Sequence Viewer

Length: 972 bp
ATGATGGATACAAATATGTTAAAAAGATTGAAATCATCATCGCCAGGAGAAGCAGAGTTATTGAGAACTAAGATTGATGATCTCCCGGAGGTTTTATTGGTTGAAATTCTGTGTCGGCTTCCCTCCAATAAACTCATATTCCAGTGCAAGCTTGTGTCCAAGCCTTGGTATAGTCTCATATCTGCTCCTTCCCTTGTTGGCCGCTATCTATGCCTCCAACGTCAAATGCAAAACCCTATTCTTACAACTCTAATTCTATTCGATATGACCGACCCAATATCTCTCATCATAACGTCGGATCATCCGGTCTTCAAAACAGCTGCAAGCAATTTCACTCTTAATTTCCTCCCATGTTATCATCAAATCACACAAATAGAAGAACTAGCAAAAGAATACCCCTGGAGCGACTATATGAGCTGGATGCTCGAACCAGGTTCCGTTGTACCACCAGTTGTGATAGGGACTTATAATGACTTGGTTTTATGCTGCGCAACCAAGCATTATCAGCGTCATTACTACCTCTGCAATCCATACACCAGACAATGGGTTCCTCTTCCTCCCACCCCTGGGGTCTACCACCGCTCGCTTGTGGCCTTTGACTGTGATCCATACTATAAGTACTCAAATGATGATCATAATGGAGATGAAGAACAAGGGACTAGTACTACTACTAGAACGAATTCTTTCATCCTTAATGCTGAGTATAAGTGGAGGGTTGTGCGACTAGTTCCGAATTCATCAGATCCAAACTTTCATTTCGAGATCTTCTCTTCTGAGACCCGTCAATGGAGAGAGATAGTTGTAGTATGCTCTCGGCCATTTTCTTCGTTTGTTACTGATGATTTCCTTCTCAATGGGAAACCCACATCTTCCGTAGCTTACAATGGAATGTTGTACTTGTGGTGCCATTATGACCTTATACTTGAGTTGGATCTGTCCAAATCCAATACTGTCCAAATCCAATACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

324

Amino Acids

37.38

Weight (kDa)

5.76

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 65 8.7e-06 F-box-like
F-box PF00646 25 - 64 6.9e-06 F-box domain
b-prop_At3g26010-like PF24750 153 - 304 4.6e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
Acc16I TGCGCA 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 903
AccB7I CCANNNNNTGG 2 cut(s) 165, 543
AccBSI CCGCTC 1 cut(s) 582
AccI GTMKAC 1 cut(s) 573
AciI CCGC 2 cut(s) 202, 580
AclWI GGATC 4 cut(s) 306, 599, 737, 939
AcoI YGGCCR 2 cut(s) 199, 815
AcsI RAATTY 3 cut(s) 105, 679, 733
AfaI GTAC 4 cut(s) 444, 620, 664, 896
AfiI CCNNNNNNNGG 5 cut(s) 165, 543, 566, 567, 786
AgsI TTSAA 3 cut(s) 31, 104, 313
AhlI ACTAGT 2 cut(s) 659, 724
AjnI CCWGG 4 cut(s) 43, 398, 430, 565
AluBI AGCT 4 cut(s) 151, 320, 417, 878
AluI AGCT 4 cut(s) 151, 320, 417, 878
Alw26I GTCTC 2 cut(s) 179, 770
AlwI GGATC 4 cut(s) 306, 599, 737, 939
AoxI GGCC 3 cut(s) 199, 591, 815
ApeKI GCWGC 2 cut(s) 320, 486
ApoI RAATTY 3 cut(s) 105, 679, 733
Asp700I GAANNNNTTC 2 cut(s) 679, 683
AspLEI GCGC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 307, 473
BciT130I CCWGG 4 cut(s) 45, 400, 432, 567
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 179, 770
BcuI ACTAGT 2 cut(s) 659, 724
BfaI CTAG 4 cut(s) 383, 660, 672, 725
BglII AGATCT 1 cut(s) 762
BisI GCNGC 3 cut(s) 202, 321, 487
BlsI GCNGC 3 cut(s) 203, 322, 488
BmcAI AGTACT 2 cut(s) 620, 664
Bme1390I CCNGG 5 cut(s) 45, 86, 400, 432, 567
BmiI GGNNCC 3 cut(s) 436, 549, 905
BmrFI CCNGG 5 cut(s) 45, 86, 400, 432, 567
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 752, 784
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 4 cut(s) 164, 398, 565, 566
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 543, 566, 567, 786
Bse1I ACTGG 2 cut(s) 142, 449
Bse8I GATNNNNATC 1 cut(s) 31
BseBI CCWGG 4 cut(s) 45, 400, 432, 567
BseDI CCNNGG 4 cut(s) 164, 398, 565, 566
BseGI GGATG 3 cut(s) 301, 426, 687
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 5 cut(s) 165, 543, 566, 567, 786
BseMII CTCAG 2 cut(s) 690, 765
BseNI ACTGG 2 cut(s) 142, 449
BseXI GCAGC 2 cut(s) 307, 473
BshFI GGCC 3 cut(s) 201, 593, 817
BshNI GGYRCC 1 cut(s) 903
BsiSI CCGG 2 cut(s) 86, 305
BslFI GGGAC 2 cut(s) 475, 670
BslI CCNNNNNNNGG 5 cut(s) 165, 543, 566, 567, 786
BsmAI GTCTC 2 cut(s) 179, 770
BsmFI GGGAC 2 cut(s) 475, 670
BsnI GGCC 3 cut(s) 201, 593, 817
Bso31I GGTCTC 1 cut(s) 770
Bsp143I GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
BspACI CCGC 2 cut(s) 202, 580
BspANI GGCC 3 cut(s) 201, 593, 817
BspCNI CTCAG 2 cut(s) 691, 766
BspLI GGNNCC 3 cut(s) 436, 549, 905
BspPI GGATC 4 cut(s) 306, 599, 737, 939
BspT107I GGYRCC 1 cut(s) 903
BspTNI GGTCTC 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 582
BsrI ACTGG 2 cut(s) 142, 449
BssECI CCNNGG 4 cut(s) 164, 398, 565, 566
BssMI GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 4 cut(s) 45, 400, 432, 567
Bst4CI ACNGT 2 cut(s) 602, 952
Bst6I CTCTTC 2 cut(s) 558, 775
BstC8I GCNNGC 3 cut(s) 149, 325, 584
BstDEI CTNAG 3 cut(s) 69, 699, 774
BstF5I GGATG 3 cut(s) 301, 426, 687
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 7 cut(s) 82, 301, 607, 634, 745, 765, 934
BstMAI GTCTC 2 cut(s) 179, 770
BstMBI GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
BstMWI GCNNNNNNNGC 2 cut(s) 210, 505
BstNI CCWGG 4 cut(s) 45, 400, 432, 567
BstSCI CCNGG 5 cut(s) 43, 84, 398, 430, 565
BstV1I GCAGC 2 cut(s) 307, 473
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 3 cut(s) 742, 762, 931
BstYI RGATCY 3 cut(s) 742, 762, 931
BsuRI GGCC 3 cut(s) 201, 593, 817
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 301, 426, 687
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 149, 325, 584
CfoI GCGC 1 cut(s) 491
CseI GACGC 1 cut(s) 497
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 4 cut(s) 443, 619, 663, 895
CviAII CATG 1 cut(s) 351
CviJI RGCY 9 cut(s) 118, 151, 163, 201, 320, 417, 593, 817, 878
CviKI_1 RGCY 9 cut(s) 118, 151, 163, 201, 320, 417, 593, 817, 878
CviQI GTAC 4 cut(s) 443, 619, 663, 895
DdeI CTNAG 3 cut(s) 69, 699, 774
DpnI GATC 7 cut(s) 81, 300, 606, 633, 744, 764, 933
DpnII GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
EaeI YGGCCR 2 cut(s) 199, 815
Eam1104I CTCTTC 2 cut(s) 558, 775
EarI CTCTTC 2 cut(s) 558, 775
Eco130I CCWWGG 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 770
EcoRI GAATTC 2 cut(s) 679, 733
EcoRII CCWGG 4 cut(s) 43, 398, 430, 565
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 354
FaqI GGGAC 2 cut(s) 475, 670
FatI CATG 1 cut(s) 350
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 202, 321, 487
FokI GGATG 3 cut(s) 288, 433, 674
Fsp4HI GCNGC 3 cut(s) 202, 321, 487
FspBI CTAG 4 cut(s) 383, 660, 672, 725
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 202, 321, 487
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 3 cut(s) 201, 593, 817
HapII CCGG 2 cut(s) 86, 305
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 491
Hin1II CATG 1 cut(s) 354
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 2 cut(s) 86, 305
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 4 cut(s) 298, 732, 742, 775
Hpy188III TCNNGA 1 cut(s) 760
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 198, 857
HpyCH4III ACNGT 2 cut(s) 602, 952
HpyCH4IV ACGT 2 cut(s) 220, 293
HpyCH4V TGCA 4 cut(s) 147, 229, 323, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 505
HpyF3I CTNAG 3 cut(s) 69, 699, 774
HpySE526I ACGT 2 cut(s) 220, 293
Hsp92II CATG 1 cut(s) 354
HspAI GCGC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
LmnI GCTCC 2 cut(s) 190, 402
Lsp1109I GCAGC 2 cut(s) 307, 473
LweI GCATC 1 cut(s) 411
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 4 cut(s) 383, 660, 672, 725
MaeII ACGT 2 cut(s) 220, 293
MaeIII GTNAC 1 cut(s) 832
MalI GATC 7 cut(s) 81, 300, 606, 633, 744, 764, 933
MbiI CCGCTC 1 cut(s) 582
MboI GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
MboII GAAGA 8 cut(s) 301, 389, 545, 659, 757, 762, 816, 861
MflI RGATCY 3 cut(s) 742, 762, 931
MluCI AATT 6 cut(s) 105, 252, 328, 340, 679, 733
MmeI TCCRAC 3 cut(s) 241, 276, 909
MnlI CCTC 8 cut(s) 82, 133, 224, 356, 530, 561, 567, 705
MroXI GAANNNNTTC 2 cut(s) 679, 683
MseI TTAA 3 cut(s) 20, 339, 693
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 86, 305
MspR9I CCNGG 5 cut(s) 45, 86, 400, 432, 567
MvaI CCWGG 4 cut(s) 45, 400, 432, 567
MwoI GCNNNNNNNGC 2 cut(s) 210, 505
NciI CCSGG 1 cut(s) 86
NdeII GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 3 cut(s) 436, 549, 905
NmeAIII GCCGAG 1 cut(s) 793
NsbI TGCGCA 1 cut(s) 490
PasI CCCWGGG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 2 cut(s) 679, 683
PflMI CCANNNNNTGG 2 cut(s) 165, 543
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 3 cut(s) 203, 322, 488
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 4 cut(s) 43, 398, 430, 565
PspGI CCWGG 4 cut(s) 43, 398, 430, 565
PspN4I GGNNCC 3 cut(s) 436, 549, 905
PsuI RGATCY 3 cut(s) 742, 762, 931
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 444, 620, 664, 896
RsaNI GTAC 4 cut(s) 443, 619, 663, 895
SaqAI TTAA 3 cut(s) 20, 339, 693
SatI GCNGC 3 cut(s) 202, 321, 487
Sau3AI GATC 7 cut(s) 79, 298, 604, 631, 742, 762, 931
ScaI AGTACT 2 cut(s) 620, 664
ScrFI CCNGG 5 cut(s) 45, 86, 400, 432, 567
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SpeI ACTAGT 2 cut(s) 659, 724
Sse9I AATT 6 cut(s) 105, 252, 328, 340, 679, 733
SsiI CCGC 2 cut(s) 202, 580
SspMI CTAG 4 cut(s) 383, 660, 672, 725
StyD4I CCNGG 5 cut(s) 43, 84, 398, 430, 565
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 602, 952
TaiI ACGT 2 cut(s) 223, 296
TaqI TCGA 3 cut(s) 261, 426, 759
TaqII GACCGA 1 cut(s) 284
TasI AATT 6 cut(s) 105, 252, 328, 340, 679, 733
TatI WGTACW 3 cut(s) 618, 662, 894
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 3 cut(s) 20, 339, 693
Tru9I TTAA 3 cut(s) 20, 339, 693
TscAI CASTG 1 cut(s) 149
TseI GCWGC 2 cut(s) 320, 486
TspDTI ATGAA 4 cut(s) 660, 676, 726, 743
TspGWI ACGGA 2 cut(s) 427, 862
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 165, 543
XapI RAATTY 3 cut(s) 105, 679, 733
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 2 cut(s) 679, 683
XspI CTAG 4 cut(s) 383, 660, 672, 725
ZrmI AGTACT 2 cut(s) 620, 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.