Rmu_sc0020391.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020391.1
OG0000270
Physical Location & Seq
Forward (+)
1104 .. 2051
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020391.1_g000001.1.cds

Sequence Viewer

Length: 948 bp
atgacttggttttatgctgcgcaaccaagcattatcagcgtcattactacctctgcaatccatacaccagacaatgggttcctcttcctcccacccctggggtctaccaccgctcgcttgtggcctttgactgtgatccattgtgatccatactataagtactcaaatgatgatcataatggagatgaagaacaagggactagtactactagtagaacgaattctttcatccttaatgctgagtataagtggaaggttgtgcgactagtaccgaattcatcagatccaaactttcatttcgagatcttctcttctgagacccgtcaatggagagagatagttgtagtatgctctcggccattttcttcattttttagtgatgtattctttctcattgggaaaactacatcttccgtagcttacaatggaatgttgtacttgtggtgccataatgaccttatacttgagttggatctgtccaaatccaatactgttaagtaccgttgcattgagcagcctgaggatttttcaaatggaggagggggaagagggtggctaggagtgagcggagggcgtctgctgttatgcatggatacagaatttctccctagagatcacgatgaggttctgctgccatttagagttagggagttgaaacaagtagtcaagggcagccaaggcaaactcaaatggttagccgaccgtgttactatagcttgcaaagatattgaggtccccaatccaaacacgattagcgtgctcgccttccacccaaacaatgaggatgtcgtatgtttgagtctataccgtaaaattatcgcgtgcaaccttcgtgtaggaacgttagagacaactacagagagtaaaataaagggagtcgagaagaacttgtactatccgttttctcttctatggtggcctaccccagttcctaagactctagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

315

Amino Acids

35.83

Weight (kDa)

6.19

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 74
AccBSI CCGCTC 2 cut(s) 113, 567
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 821
AciI CCGC 2 cut(s) 111, 567
AclI AACGTT 1 cut(s) 842
AclWI GGATC 4 cut(s) 130, 140, 278, 480
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 3 cut(s) 220, 274, 599
AcyI GRCGYC 1 cut(s) 574
AfaI GTAC 6 cut(s) 161, 205, 270, 437, 500, 893
AfiI CCNNNNNNNGG 4 cut(s) 74, 97, 98, 327
AgsI TTSAA 2 cut(s) 531, 655
AhlI ACTAGT 3 cut(s) 200, 209, 265
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 419, 716
AluI AGCT 2 cut(s) 419, 716
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 311, 842
AlwI GGATC 4 cut(s) 130, 140, 278, 480
AoxI GGCC 3 cut(s) 122, 356, 917
ApeKI GCWGC 4 cut(s) 17, 514, 631, 672
ApoI RAATTY 3 cut(s) 220, 274, 599
Asp700I GAANNNNTTC 2 cut(s) 220, 224
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 733
AvaII GGWCC 1 cut(s) 733
AxyI CCTNAGG 1 cut(s) 519
BanI GGYRCC 1 cut(s) 444
BarI GAAGNNNNNNTAC 2 cut(s) 875, 907
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 4, 526, 618, 684
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BciT130I CCWGG 1 cut(s) 98
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 311, 842
BcuI ACTAGT 3 cut(s) 200, 209, 265
BfaI CTAG 6 cut(s) 201, 210, 266, 557, 609, 941
BfmI CTRYAG 2 cut(s) 711, 855
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 303
BisI GCNGC 4 cut(s) 18, 515, 632, 673
BlsI GCNGC 4 cut(s) 19, 516, 633, 674
BmcAI AGTACT 2 cut(s) 161, 205
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 3 cut(s) 80, 446, 735
BmrFI CCNGG 1 cut(s) 98
BmrI ACTGGG 1 cut(s) 920
BmuI ACTGGG 1 cut(s) 920
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 96, 97, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 97, 98, 327
Bse1I ACTGG 1 cut(s) 926
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 96, 97, 676
BseGI GGATG 2 cut(s) 228, 790
BseLI CCNNNNNNNGG 4 cut(s) 74, 97, 98, 327
BseMII CTCAG 3 cut(s) 231, 306, 510
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 4 cut(s) 4, 526, 618, 684
Bsh1236I CGCG 1 cut(s) 821
Bsh1285I CGRYCG 1 cut(s) 703
BshFI GGCC 3 cut(s) 124, 358, 919
BshNI GGYRCC 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 762
BslFI GGGAC 2 cut(s) 211, 719
BslI CCNNNNNNNGG 4 cut(s) 74, 97, 98, 327
BsmAI GTCTC 2 cut(s) 311, 842
BsmFI GGGAC 2 cut(s) 211, 719
BsnI GGCC 3 cut(s) 124, 358, 919
Bso31I GGTCTC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
BspACI CCGC 2 cut(s) 111, 567
BspANI GGCC 3 cut(s) 124, 358, 919
BspCNI CTCAG 3 cut(s) 232, 307, 511
BspFNI CGCG 1 cut(s) 821
BspLI GGNNCC 3 cut(s) 80, 446, 735
BspPI GGATC 4 cut(s) 130, 140, 278, 480
BspT107I GGYRCC 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 2 cut(s) 113, 567
BsrI ACTGG 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 96, 97, 676
BssMI GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
BssNI GRCGYC 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 5 cut(s) 133, 493, 503, 704, 809
Bst6I CTCTTC 4 cut(s) 89, 316, 541, 912
BstACI GRCGYC 1 cut(s) 574
BstC8I GCNNGC 5 cut(s) 115, 718, 758, 762, 823
BstDEI CTNAG 4 cut(s) 240, 315, 519, 933
BstF5I GGATG 2 cut(s) 228, 790
BstFNI CGCG 1 cut(s) 821
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 7 cut(s) 138, 148, 175, 286, 306, 475, 616
BstMAI GTCTC 2 cut(s) 311, 842
BstMBI GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 2 cut(s) 36, 678
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 2 cut(s) 711, 855
BstUI CGCG 1 cut(s) 821
BstV1I GCAGC 4 cut(s) 4, 526, 618, 684
BstX2I RGATCY 3 cut(s) 283, 303, 472
BstYI RGATCY 3 cut(s) 283, 303, 472
Bsu36I CCTNAGG 1 cut(s) 519
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 3 cut(s) 124, 358, 919
BtsCI GGATG 2 cut(s) 228, 790
Cac8I GCNNGC 5 cut(s) 115, 718, 758, 762, 823
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 2 cut(s) 28, 563
Csp6I GTAC 6 cut(s) 160, 204, 269, 436, 499, 892
CviAII CATG 1 cut(s) 589
CviJI RGCY 9 cut(s) 124, 358, 419, 517, 556, 675, 698, 716, 919
CviKI_1 RGCY 9 cut(s) 124, 358, 419, 517, 556, 675, 698, 716, 919
CviQI GTAC 6 cut(s) 160, 204, 269, 436, 499, 892
DdeI CTNAG 4 cut(s) 240, 315, 519, 933
DpnI GATC 7 cut(s) 137, 147, 174, 285, 305, 474, 615
DpnII GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 4 cut(s) 89, 316, 541, 912
EarI CTCTTC 4 cut(s) 89, 316, 541, 912
Eco130I CCWWGG 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 733
Eco81I CCTNAGG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 733
EcoRI GAATTC 2 cut(s) 220, 274
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 1 cut(s) 592
FaqI GGGAC 2 cut(s) 211, 719
FatI CATG 1 cut(s) 588
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 4 cut(s) 18, 515, 632, 673
FokI GGATG 2 cut(s) 215, 797
Fsp4HI GCNGC 4 cut(s) 18, 515, 632, 673
FspBI CTAG 6 cut(s) 201, 210, 266, 557, 609, 941
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 1 cut(s) 21
GluI GCNGC 4 cut(s) 18, 515, 632, 673
HaeIII GGCC 3 cut(s) 124, 358, 919
HgaI GACGC 2 cut(s) 28, 563
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 574
Hin1II CATG 1 cut(s) 592
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 3 cut(s) 799, 876, 937
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 283, 316
Hpy188III TCNNGA 4 cut(s) 301, 617, 880, 941
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 247, 775, 839
HpyCH4III ACNGT 5 cut(s) 133, 493, 503, 704, 809
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 5 cut(s) 56, 507, 588, 720, 825
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 678
HpyF3I CTNAG 4 cut(s) 240, 315, 519, 933
HpySE526I ACGT 1 cut(s) 842
Hsp92I GRCGYC 1 cut(s) 574
Hsp92II CATG 1 cut(s) 592
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
LpnPI CCDG 5 cut(s) 81, 83, 110, 531, 939
Lsp1109I GCAGC 4 cut(s) 4, 526, 618, 684
MaeI CTAG 6 cut(s) 201, 210, 266, 557, 609, 941
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 1 cut(s) 706
MalI GATC 7 cut(s) 137, 147, 174, 285, 305, 474, 615
MbiI CCGCTC 2 cut(s) 113, 567
MboI GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
MboII GAAGA 9 cut(s) 76, 200, 298, 303, 357, 402, 558, 895, 899
MflI RGATCY 3 cut(s) 283, 303, 472
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 4 cut(s) 220, 274, 599, 813
MlyI GAGTC 3 cut(s) 808, 885, 931
MmeI TCCRAC 1 cut(s) 450
Mph1103I ATGCAT 1 cut(s) 590
MroXI GAANNNNTTC 2 cut(s) 220, 224
MseI TTAA 2 cut(s) 234, 495
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 821
MwoI GCNNNNNNNGC 2 cut(s) 36, 678
NdeII GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
NlaIII CATG 1 cut(s) 592
NlaIV GGNNCC 3 cut(s) 80, 446, 735
NmeAIII GCCGAG 1 cut(s) 334
NsbI TGCGCA 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 590
PasI CCCWGGG 1 cut(s) 97
PdmI GAANNNNTTC 2 cut(s) 220, 224
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 4 cut(s) 19, 516, 633, 674
PleI GAGTC 3 cut(s) 807, 884, 931
PpsI GAGTC 3 cut(s) 807, 884, 931
PpuMI RGGWCCY 1 cut(s) 733
Psp1406I AACGTT 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 80, 446, 735
PspPI GGNCC 1 cut(s) 733
PspPPI RGGWCCY 1 cut(s) 733
PsuI RGATCY 3 cut(s) 283, 303, 472
RsaI GTAC 6 cut(s) 161, 205, 270, 437, 500, 893
RsaNI GTAC 6 cut(s) 160, 204, 269, 436, 499, 892
SaqAI TTAA 2 cut(s) 234, 495
SatI GCNGC 4 cut(s) 18, 515, 632, 673
Sau3AI GATC 7 cut(s) 135, 145, 172, 283, 303, 472, 613
Sau96I GGNCC 1 cut(s) 733
ScaI AGTACT 2 cut(s) 161, 205
SchI GAGTC 3 cut(s) 808, 885, 931
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 762
SetI ASST 9 cut(s) 53, 258, 421, 459, 627, 718, 735, 831, 845
SfcI CTRYAG 2 cut(s) 711, 855
SinI GGWCC 1 cut(s) 733
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SpeI ACTAGT 3 cut(s) 200, 209, 265
Sse9I AATT 4 cut(s) 220, 274, 599, 813
SsiI CCGC 2 cut(s) 111, 567
SspMI CTAG 6 cut(s) 201, 210, 266, 557, 609, 941
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 5 cut(s) 133, 493, 503, 704, 809
TaiI ACGT 1 cut(s) 845
TaqI TCGA 2 cut(s) 300, 879
TasI AATT 4 cut(s) 220, 274, 599, 813
TatI WGTACW 4 cut(s) 159, 203, 435, 891
Tru1I TTAA 2 cut(s) 234, 495
Tru9I TTAA 2 cut(s) 234, 495
TseI GCWGC 4 cut(s) 17, 514, 631, 672
TspDTI ATGAA 5 cut(s) 201, 217, 267, 284, 357
TspGWI ACGGA 2 cut(s) 403, 888
Van91I CCANNNNNTGG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 3 cut(s) 220, 274, 599
XbaI TCTAGA 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 2 cut(s) 220, 224
XspI CTAG 6 cut(s) 201, 210, 266, 557, 609, 941
ZrmI AGTACT 2 cut(s) 161, 205
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.