Rh6AG511800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000270
Physical Location & Seq
Reverse (-)
68220304 .. 68220663
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG511800.1

Sequence Viewer

Length: 360 bp
ATGGATACTGAATTTCTCCCTAGAGATTACGATGAGGTTCTGCTGCCATTTAGAGTTAGGGAGTTGAAACAAGTAGTCAAGGGCAGCCAAGGCAAACTCAAATGGTTAGCCGACCGTGTTACTATAGCTTGCAAAGATATTGAGGTCCCCAATCCAAACACGATTAGCGTGCTCGCCTTCCACCCAAACAATGAGGATGTCGTGTGTTTGAGTCTATACCGTAAAATTATCGCGTGCAACCTTCGTGGAGGAACGTCAGAGACAACTACAGAGAGTACAATAAAGGGAGTCGAGAAGAACTTGTACTATCCGTTTTCTCTTCCATGGTGGCCTACCCCGGTTCCTAAGACTCTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

119

Amino Acids

13.59

Weight (kDa)

6.59

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 2 cut(s) 277, 305
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 43, 84
ApoI RAATTY 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 30, 96
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 2 cut(s) 21, 353
BfmI CTRYAG 2 cut(s) 123, 267
BisI GCNGC 2 cut(s) 44, 85
BlsI GCNGC 2 cut(s) 45, 86
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 147, 342
BmrFI CCNGG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 88, 323, 336
BseDI CCNNGG 3 cut(s) 88, 323, 336
BseGI GGATG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 30, 96
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 323
BspANI GGCC 1 cut(s) 331
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 147, 342
BssECI CCNNGG 3 cut(s) 88, 323, 336
BssT1I CCWWGG 2 cut(s) 88, 323
Bst4CI ACNGT 2 cut(s) 116, 221
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 4 cut(s) 130, 170, 174, 235
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 254
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 2 cut(s) 123, 267
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 30, 96
BsuRI GGCC 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 4 cut(s) 130, 170, 174, 235
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 276, 304
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 1 cut(s) 324
CviJI RGCY 4 cut(s) 87, 110, 128, 331
CviKI_1 RGCY 4 cut(s) 87, 110, 128, 331
CviQI GTAC 2 cut(s) 276, 304
DdeI CTNAG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 88, 323
Eco47I GGWCC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 88, 323
ErhI CCWWGG 2 cut(s) 88, 323
FaeI CATG 1 cut(s) 327
FaiI YATR 3 cut(s) 125, 217, 325
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 2 cut(s) 44, 85
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 44, 85
FspBI CTAG 2 cut(s) 21, 353
GluI GCNGC 2 cut(s) 44, 85
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 338
Hin1II CATG 1 cut(s) 327
HinfI GANTC 3 cut(s) 211, 288, 349
HpaII CCGG 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 292, 353
HpyAV CCTTC 2 cut(s) 187, 251
HpyCH4III ACNGT 2 cut(s) 116, 221
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 132, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 1 cut(s) 327
LpnPI CCDG 1 cut(s) 351
Lsp1109I GCAGC 2 cut(s) 30, 96
MaeI CTAG 2 cut(s) 21, 353
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 118
MboII GAAGA 2 cut(s) 307, 311
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 11, 225
MlyI GAGTC 3 cut(s) 220, 297, 343
MnlI CCTC 4 cut(s) 28, 136, 187, 242
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 323
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 2 cut(s) 147, 342
PkrI GCNGC 2 cut(s) 45, 86
PleI GAGTC 3 cut(s) 219, 296, 343
PpsI GAGTC 3 cut(s) 219, 296, 343
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 147, 342
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 277, 305
RsaNI GTAC 2 cut(s) 276, 304
SatI GCNGC 2 cut(s) 44, 85
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 3 cut(s) 220, 297, 343
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 174
SetI ASST 5 cut(s) 39, 130, 147, 243, 257
SfcI CTRYAG 2 cut(s) 123, 267
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 11, 225
SspMI CTAG 2 cut(s) 21, 353
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 88, 323
TaaI ACNGT 2 cut(s) 116, 221
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 291
TasI AATT 2 cut(s) 11, 225
TatI WGTACW 2 cut(s) 275, 303
TseI GCWGC 2 cut(s) 43, 84
TspGWI ACGGA 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 11
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 2 cut(s) 21, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.