Rh2DG508200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000270
Physical Location & Seq
Reverse (-)
73226101 .. 73226385
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG508200.1

Sequence Viewer

Length: 285 bp
ATGGTTTCCCTCAGCACAATGGTTTTCGAAAGTCCCGGATGTCACATACTGACTCCAATTACAATGCTAGCTTTCGATCCAAATAATGATGATATTTTGTATCTAGAATTATTTGGTCGCATTATTGTCACGTGTAACATTCGTGATAAAAGGTTAAAGGAGGCTACATTAATCAGTCCATATGAAAACCTCGTTGATTTTGGGCGAGGCGCCTTCTCATTTGTACTCCCAAGGTGGCCAACACCCCTTCCTAAATCTAGAAGTTATCCACGGACTATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

7.8

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 236
AcvI CACGTG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 131
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 71
AoxI GGCC 1 cut(s) 236
AseI ATTAAT 1 cut(s) 170
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 36
AsuII TTCGAA 1 cut(s) 27
AsuNHI GCTAGC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 238
BanI GGYRCC 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 36
BfaI CTAG 3 cut(s) 68, 104, 258
BfoI RGCGCY 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 36
BmtI GCTAGC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 230, 269
BseDI CCNNGG 2 cut(s) 230, 269
BseGI GGATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 230, 269
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 224
CviJI RGCY 3 cut(s) 71, 164, 238
CviKI_1 RGCY 3 cut(s) 71, 164, 238
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 11
DinI GGCGCC 1 cut(s) 211
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 230
Eco72I CACGTG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 230
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 230
FaiI YATR 3 cut(s) 47, 181, 183
FaqI GGGAC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 181
FokI GGATG 1 cut(s) 51
FspBI CTAG 3 cut(s) 68, 104, 258
GlaI GCGC 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 104, 143, 258
HpyAV CCTTC 2 cut(s) 223, 257
HpyCH4IV ACGT 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 1 cut(s) 210
KasI GGCGCC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 49
MaeI CTAG 3 cut(s) 68, 104, 258
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 3 cut(s) 41, 127, 134
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 2 cut(s) 57, 107
MluNI TGGCCA 1 cut(s) 238
Mly113I GGCGCC 1 cut(s) 210
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 4 cut(s) 20, 154, 200, 200
Mox20I TGGCCA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 238
MseI TTAA 2 cut(s) 155, 170
Msp20I TGGCCA 1 cut(s) 238
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 36
NarI GGCGCC 1 cut(s) 210
NciI CCSGG 1 cut(s) 36
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 76
NheI GCTAGC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 41, 127
NspV TTCGAA 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 34
PleI GAGTC 1 cut(s) 46
PluTI GGCGCC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 170
PspCI CACGTG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 211
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 155, 170
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 36
SetI ASST 5 cut(s) 73, 134, 155, 192, 236
SfoI GGCGCC 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 27
Sse9I AATT 2 cut(s) 57, 107
SspDI GGCGCC 1 cut(s) 209
SspMI CTAG 3 cut(s) 68, 104, 258
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 230
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 27, 75
TasI AATT 2 cut(s) 57, 107
TatI WGTACW 1 cut(s) 223
Tru1I TTAA 2 cut(s) 155, 170
Tru9I TTAA 2 cut(s) 155, 170
TseFI GTSAC 2 cut(s) 41, 127
Tsp45I GTSAC 2 cut(s) 41, 127
TspDTI ATGAA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 170
XbaI TCTAGA 2 cut(s) 103, 257
XspI CTAG 3 cut(s) 68, 104, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.