Rh3CG021800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000270
Physical Location & Seq
Forward (+)
1498311 .. 1499452
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG021800.1

Sequence Viewer

Length: 900 bp
ATGATTATGTATGCAAAGCATAAGACTTTAGTCCTCACCATGTCATCCGAGCCTCCTCCTCCTCCTCTGTTAGAAGCCAGCATATCAAGCATTTTCTCTTTCCTCCCTTGTTTTCAAGGCCATGAATATGCCGAGAAGGGCGATAAGCTATATGTTAATGCCGAGTATAGGTGCAGGATTGTACGATTACTTCCTAACCAAGATTACAAGGGATTTGTTGTGGAGATATATTCTTCCGAGACCGGTGAATGGAGGGAGTATCCATCGTCTAAGATATTATGCCAACAACGACCCTATACTACTTTTGAGTGTCCAAGCGTTGCTTGCAATGGAAAGCTGTATTGGCTGAATGACGGAGGCATTATTTTTGAGTTGGATCCGTTCAATATTTGTACTGGCGATGTTATTGATAAATGTCGTTTCATTGATGCACCGACCCCAGATGCACATATTTTATGTTGGCATATAGGTGTTTGTCAAGGGCGTTTGCGGATGTGCCCGTATTTCTTTTATTGTTCTGCTCGTTATCCTATAACTATTTGGGAGATGAAAGAAAACCAAGTGGATGGCAAACCAGAATGGTGTTTACTTCATCACATATCTTCTCTGTCAGAGATGGTTGCAAAACAACCTTTCATCACTTTAAGATTTGAAATCGTAGGTCTCCACCCTGTTCATGGGGATATAGTGTACTTACAAAATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGTGAAAGAACATTAGAGATAGCTACAAAAATTCCATTTGAGAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCCACAATGTGATCCCATGGTGGCCAACACCAATTCCAACAAAGACTAAACTATCACGAGGAGTGCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

299

Amino Acids

34.52

Weight (kDa)

6.31

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 66 - 258 6.2e-12 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 490
AclWI GGATC 3 cut(s) 371, 384, 832
AcoI YGGCCR 1 cut(s) 848
AcsI RAATTY 1 cut(s) 777
AcvI CACGTG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 3 cut(s) 183, 394, 692
AfiI CCNNNNNNNGG 3 cut(s) 168, 249, 677
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 3 cut(s) 116, 385, 653
AjnI CCWGG 1 cut(s) 796
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 3 cut(s) 148, 337, 770
AluI AGCT 3 cut(s) 148, 337, 770
Alw26I GTCTC 2 cut(s) 233, 668
AlwI GGATC 3 cut(s) 371, 384, 832
AoxI GGCC 3 cut(s) 118, 810, 848
ApaI GGGCCC 1 cut(s) 814
ApoI RAATTY 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 810, 811
AsuHPI GGTGA 2 cut(s) 28, 257
BaeGI GKGCMC 2 cut(s) 500, 814
BalI TGGCCA 1 cut(s) 850
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 814
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BauI CACGAG 1 cut(s) 882
BbrPI CACGTG 1 cut(s) 738
BccI CCATC 3 cut(s) 271, 560, 610
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 2 cut(s) 270, 794
BcoDI GTCTC 2 cut(s) 233, 668
BfuI GTATCC 2 cut(s) 270, 794
Bme1390I CCNGG 1 cut(s) 798
BmgT120I GGNCC 2 cut(s) 810, 811
BmiI GGNNCC 3 cut(s) 378, 812, 813
BmrFI CCNGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 418, 433
BoxI GACNNNNGTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 816
BsaAI YACGTR 1 cut(s) 738
BsaI GGTCTC 2 cut(s) 233, 668
BsaJI CCNNGG 1 cut(s) 842
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 249, 677
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 2 cut(s) 334, 748
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 842
BseGI GGATG 3 cut(s) 44, 498, 571
BseLI CCNNNNNNNGG 3 cut(s) 168, 249, 677
BseMI GCAATG 2 cut(s) 334, 748
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 5 cut(s) 45, 48, 51, 54, 900
BseSI GKGCMC 2 cut(s) 500, 814
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 3 cut(s) 120, 812, 850
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 168, 249, 677
BsmAI GTCTC 2 cut(s) 233, 668
BsnI GGCC 3 cut(s) 120, 812, 850
Bso31I GGTCTC 2 cut(s) 233, 668
Bsp120I GGGCCC 1 cut(s) 810
Bsp1286I GDGCHC 2 cut(s) 500, 814
Bsp143I GATC 2 cut(s) 376, 837
Bsp19I CCATGG 1 cut(s) 842
BspACI CCGC 1 cut(s) 490
BspANI GGCC 3 cut(s) 120, 812, 850
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 378, 812, 813
BspPI GGATC 3 cut(s) 371, 384, 832
BspTNI GGTCTC 2 cut(s) 233, 668
BsrDI GCAATG 2 cut(s) 334, 748
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 842
BssMI GATC 2 cut(s) 376, 837
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 1 cut(s) 842
Bst2BI CACGAG 1 cut(s) 882
Bst2UI CCWGG 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 79, 325
BstDEI CTNAG 2 cut(s) 270, 816
BstDSI CCRYGG 1 cut(s) 842
BstF5I GGATG 3 cut(s) 44, 498, 571
BstKTI GATC 2 cut(s) 379, 840
BstMAI GTCTC 2 cut(s) 233, 668
BstMBI GATC 2 cut(s) 376, 837
BstMWI GCNNNNNNNGC 3 cut(s) 87, 324, 343
BstNI CCWGG 1 cut(s) 798
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 796
BstSLI GKGCMC 2 cut(s) 500, 814
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 1 cut(s) 376
BsuI GTATCC 2 cut(s) 270, 794
BsuRI GGCC 3 cut(s) 120, 812, 850
BtgI CCRYGG 1 cut(s) 842
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 44, 498, 571
Cac8I GCNNGC 2 cut(s) 79, 325
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 810, 811
Csp6I GTAC 3 cut(s) 182, 393, 691
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 4 cut(s) 40, 122, 677, 843
CviQI GTAC 3 cut(s) 182, 393, 691
DdeI CTNAG 2 cut(s) 270, 816
DpnI GATC 2 cut(s) 378, 839
DpnII GATC 2 cut(s) 376, 837
DraIII CACNNNGTG 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 842
Eco24I GRGCYC 1 cut(s) 814
Eco31I GGTCTC 2 cut(s) 233, 668
Eco72I CACGTG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 842
EcoT38I GRGCYC 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 842
FaeI CATG 4 cut(s) 43, 125, 680, 846
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 4 cut(s) 39, 121, 676, 842
FokI GGATG 3 cut(s) 31, 505, 578
FriOI GRGCYC 1 cut(s) 814
HaeIII GGCC 3 cut(s) 120, 812, 850
HapII CCGG 1 cut(s) 243
Hin1II CATG 4 cut(s) 43, 125, 680, 846
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 28, 257
Hpy166II GTNNAC 2 cut(s) 587, 691
Hpy188I TCNGA 3 cut(s) 49, 238, 613
Hpy188III TCNNGA 2 cut(s) 749, 882
Hpy8I GTNNAC 2 cut(s) 587, 691
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 7 cut(s) 14, 174, 327, 431, 446, 623, 741
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 324, 343
HpyF3I CTNAG 2 cut(s) 270, 816
HpySE526I ACGT 1 cut(s) 737
Hsp92II CATG 4 cut(s) 43, 125, 680, 846
Kzo9I GATC 2 cut(s) 376, 837
LweI GCATC 2 cut(s) 418, 433
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 1 cut(s) 733
MalI GATC 2 cut(s) 378, 839
MboI GATC 2 cut(s) 376, 837
MboII GAAGA 2 cut(s) 225, 594
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 500, 814
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 2 cut(s) 777, 858
MluNI TGGCCA 1 cut(s) 850
MmeI TCCRAC 2 cut(s) 354, 887
Mox20I TGGCCA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 850
MseI TTAA 2 cut(s) 156, 644
MslI CAYNNNNRTG 2 cut(s) 126, 468
Msp20I TGGCCA 1 cut(s) 850
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 3 cut(s) 87, 324, 343
NcoI CCATGG 1 cut(s) 842
NdeII GATC 2 cut(s) 376, 837
NlaIII CATG 4 cut(s) 43, 125, 680, 846
NlaIV GGNNCC 3 cut(s) 378, 812, 813
NmeAIII GCCGAG 2 cut(s) 157, 187
NmuCI GTSAC 1 cut(s) 733
PfoI TCCNGGA 1 cut(s) 796
PinAI ACCGGT 1 cut(s) 242
PmaCI CACGTG 1 cut(s) 738
PmlI CACGTG 1 cut(s) 738
Ppu21I YACGTR 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 796
PspCI CACGTG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 3 cut(s) 378, 812, 813
PspOMI GGGCCC 1 cut(s) 810
PspPI GGNCC 2 cut(s) 810, 811
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 3 cut(s) 183, 394, 692
RsaNI GTAC 3 cut(s) 182, 393, 691
RseI CAYNNNNRTG 2 cut(s) 126, 468
SaqAI TTAA 2 cut(s) 156, 644
Sau3AI GATC 2 cut(s) 376, 837
Sau96I GGNCC 2 cut(s) 810, 811
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 2 cut(s) 500, 814
SetI ASST 8 cut(s) 150, 173, 339, 472, 634, 664, 740, 772
SfaNI GCATC 2 cut(s) 418, 433
SmiMI CAYNNNNRTG 2 cut(s) 126, 468
Sse9I AATT 2 cut(s) 777, 858
SsiI CCGC 1 cut(s) 490
SspI AATATT 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 796
StyI CCWWGG 1 cut(s) 842
TaiI ACGT 1 cut(s) 740
TasI AATT 2 cut(s) 777, 858
TatI WGTACW 2 cut(s) 392, 690
Tru1I TTAA 2 cut(s) 156, 644
Tru9I TTAA 2 cut(s) 156, 644
TseFI GTSAC 1 cut(s) 733
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 6 cut(s) 138, 412, 563, 581, 625, 665
TspGWI ACGGA 2 cut(s) 369, 369
XapI RAATTY 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.