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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 665 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 255, 1097 |
| AccBSI | CCGCTC | 1 cut(s) | 93 |
| AciI | CCGC | 5 cut(s) | 93, 760, 790, 854, 982 |
| AclWI | GGATC | 4 cut(s) | 599, 612, 779, 792 |
| AcsI | RAATTY | 2 cut(s) | 408, 443 |
| AcuI | CTGAAG | 1 cut(s) | 926 |
| AcvI | CACGTG | 2 cut(s) | 221, 315 |
| AcyI | GRCGYC | 1 cut(s) | 754 |
| AfaI | GTAC | 4 cut(s) | 300, 367, 395, 538 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 255, 981, 1097 |
| AflIII | ACRYGT | 1 cut(s) | 724 |
| AgsI | TTSAA | 6 cut(s) | 428, 613, 695, 722, 823, 1048 |
| AjnI | CCWGG | 3 cut(s) | 541, 974, 1090 |
| AluBI | AGCT | 2 cut(s) | 382, 504 |
| AluI | AGCT | 2 cut(s) | 382, 504 |
| Alw21I | GWGCWC | 1 cut(s) | 506 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AlwI | GGATC | 4 cut(s) | 599, 612, 779, 792 |
| Ama87I | CYCGRG | 1 cut(s) | 507 |
| AoxI | GGCC | 3 cut(s) | 586, 1128, 1154 |
| ApeKI | GCWGC | 2 cut(s) | 80, 198 |
| ApoI | RAATTY | 2 cut(s) | 408, 443 |
| AseI | ATTAAT | 1 cut(s) | 936 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1130 |
| AspA2I | CCTAGG | 1 cut(s) | 736 |
| AspLEI | GCGC | 1 cut(s) | 85 |
| AsuC2I | CCSGG | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 1 cut(s) | 668 |
| AvaI | CYCGRG | 1 cut(s) | 507 |
| AvrII | CCTAGG | 1 cut(s) | 736 |
| BamHI | GGATCC | 2 cut(s) | 604, 784 |
| BanII | GRGCYC | 1 cut(s) | 506 |
| BauI | CACGAG | 1 cut(s) | 279 |
| BbrPI | CACGTG | 2 cut(s) | 221, 315 |
| Bbv12I | GWGCWC | 1 cut(s) | 506 |
| BbvI | GCAGC | 2 cut(s) | 67, 185 |
| BccI | CCATC | 4 cut(s) | 203, 239, 343, 851 |
| BciT130I | CCWGG | 3 cut(s) | 543, 976, 1092 |
| BclI | TGATCA | 2 cut(s) | 139, 844 |
| BcnI | CCSGG | 1 cut(s) | 338 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BfaI | CTAG | 2 cut(s) | 737, 1019 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BisI | GCNGC | 2 cut(s) | 81, 199 |
| BlnI | CCTAGG | 1 cut(s) | 736 |
| BlsI | GCNGC | 2 cut(s) | 82, 200 |
| BmcAI | AGTACT | 2 cut(s) | 300, 367 |
| Bme1390I | CCNGG | 4 cut(s) | 338, 543, 976, 1092 |
| BmeT110I | CYCGRG | 1 cut(s) | 507 |
| BmiI | GGNNCC | 3 cut(s) | 606, 786, 1102 |
| BmrFI | CCNGG | 4 cut(s) | 338, 543, 976, 1092 |
| BpmI | CTGGAG | 3 cut(s) | 495, 525, 800 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| BpuMI | CCSGG | 1 cut(s) | 338 |
| BsaAI | YACGTR | 2 cut(s) | 221, 315 |
| BsaHI | GRCGYC | 1 cut(s) | 754 |
| BsaJI | CCNNGG | 3 cut(s) | 508, 736, 975 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1023, 1053, 1072, 1102 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 255, 981, 1097 |
| Bse1I | ACTGG | 2 cut(s) | 478, 658 |
| Bse3DI | GCAATG | 1 cut(s) | 260 |
| BseBI | CCWGG | 3 cut(s) | 543, 976, 1092 |
| BseDI | CCNNGG | 3 cut(s) | 508, 736, 975 |
| BseGI | GGATG | 6 cut(s) | 10, 214, 358, 768, 862, 968 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 255, 981, 1097 |
| BseMI | GCAATG | 1 cut(s) | 260 |
| BseMII | CTCAG | 2 cut(s) | 133, 459 |
| BseNI | ACTGG | 2 cut(s) | 478, 658 |
| BseXI | GCAGC | 2 cut(s) | 67, 185 |
| BsgI | GTGCAG | 1 cut(s) | 399 |
| BshFI | GGCC | 3 cut(s) | 588, 1130, 1156 |
| BsiHKAI | GWGCWC | 1 cut(s) | 506 |
| BsiHKCI | CYCGRG | 1 cut(s) | 507 |
| BsiSI | CCGG | 1 cut(s) | 337 |
| BslFI | GGGAC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 255, 981, 1097 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 1 cut(s) | 187 |
| BsnI | GGCC | 3 cut(s) | 588, 1130, 1156 |
| BsoBI | CYCGRG | 1 cut(s) | 507 |
| Bsp1286I | GDGCHC | 1 cut(s) | 506 |
| Bsp143I | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| BspACI | CCGC | 5 cut(s) | 93, 760, 790, 854, 982 |
| BspANI | GGCC | 3 cut(s) | 588, 1130, 1156 |
| BspCNI | CTCAG | 2 cut(s) | 132, 460 |
| BspLI | GGNNCC | 3 cut(s) | 606, 786, 1102 |
| BspPI | GGATC | 4 cut(s) | 599, 612, 779, 792 |
| BspQI | GCTCTTC | 1 cut(s) | 270 |
| BsrBI | CCGCTC | 1 cut(s) | 93 |
| BsrDI | GCAATG | 1 cut(s) | 260 |
| BsrI | ACTGG | 2 cut(s) | 478, 658 |
| BssECI | CCNNGG | 3 cut(s) | 508, 736, 975 |
| BssMI | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| BssNI | GRCGYC | 1 cut(s) | 754 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 1 cut(s) | 736 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 3 cut(s) | 543, 976, 1092 |
| Bst4CI | ACNGT | 1 cut(s) | 629 |
| Bst6I | CTCTTC | 2 cut(s) | 270, 469 |
| BstACI | GRCGYC | 1 cut(s) | 754 |
| BstBAI | YACGTR | 2 cut(s) | 221, 315 |
| BstC8I | GCNNGC | 3 cut(s) | 852, 865, 984 |
| BstDEI | CTNAG | 2 cut(s) | 119, 468 |
| BstF5I | GGATG | 6 cut(s) | 10, 214, 358, 768, 862, 968 |
| BstHHI | GCGC | 1 cut(s) | 85 |
| BstKTI | GATC | 7 cut(s) | 142, 322, 358, 607, 778, 787, 847 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMBI | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 105, 798, 860 |
| BstNI | CCWGG | 3 cut(s) | 543, 976, 1092 |
| BstSCI | CCNGG | 4 cut(s) | 336, 541, 974, 1090 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstV1I | GCAGC | 2 cut(s) | 67, 185 |
| BstX2I | RGATCY | 2 cut(s) | 604, 784 |
| BstYI | RGATCY | 2 cut(s) | 604, 784 |
| BsuRI | GGCC | 3 cut(s) | 588, 1130, 1156 |
| BtsCI | GGATG | 6 cut(s) | 10, 214, 358, 768, 862, 968 |
| Cac8I | GCNNGC | 3 cut(s) | 852, 865, 984 |
| CfoI | GCGC | 1 cut(s) | 85 |
| CseI | GACGC | 1 cut(s) | 743 |
| Csp6I | GTAC | 4 cut(s) | 299, 366, 394, 537 |
| CviAII | CATG | 2 cut(s) | 76, 1105 |
| CviJI | RGCY | 8 cut(s) | 80, 382, 504, 588, 706, 986, 1130, 1156 |
| CviKI_1 | RGCY | 8 cut(s) | 80, 382, 504, 588, 706, 986, 1130, 1156 |
| CviQI | GTAC | 4 cut(s) | 299, 366, 394, 537 |
| DdeI | CTNAG | 2 cut(s) | 119, 468 |
| DpnI | GATC | 7 cut(s) | 141, 321, 357, 606, 777, 786, 846 |
| DpnII | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 665 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 665 |
| Eam1104I | CTCTTC | 2 cut(s) | 270, 469 |
| EarI | CTCTTC | 2 cut(s) | 270, 469 |
| EciI | GGCGGA | 1 cut(s) | 869 |
| Ecl136II | GAGCTC | 1 cut(s) | 504 |
| Eco130I | CCWWGG | 1 cut(s) | 736 |
| Eco147I | AGGCCT | 1 cut(s) | 1130 |
| Eco24I | GRGCYC | 1 cut(s) | 506 |
| Eco53kI | GAGCTC | 1 cut(s) | 504 |
| Eco57I | CTGAAG | 1 cut(s) | 926 |
| Eco72I | CACGTG | 2 cut(s) | 221, 315 |
| Eco88I | CYCGRG | 1 cut(s) | 507 |
| EcoICRI | GAGCTC | 1 cut(s) | 504 |
| EcoRI | GAATTC | 2 cut(s) | 408, 443 |
| EcoRII | CCWGG | 3 cut(s) | 541, 974, 1090 |
| EcoT14I | CCWWGG | 1 cut(s) | 736 |
| EcoT38I | GRGCYC | 1 cut(s) | 506 |
| ErhI | CCWWGG | 1 cut(s) | 736 |
| FaeI | CATG | 2 cut(s) | 79, 1108 |
| FaqI | GGGAC | 1 cut(s) | 187 |
| FatI | CATG | 2 cut(s) | 75, 1104 |
| FauI | CCCGC | 3 cut(s) | 86, 797, 975 |
| FauNDI | CATATG | 1 cut(s) | 163 |
| FbaI | TGATCA | 2 cut(s) | 139, 844 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 199 |
| FokI | GGATG | 6 cut(s) | 17, 221, 365, 775, 869, 975 |
| FriOI | GRGCYC | 1 cut(s) | 506 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 199 |
| FspBI | CTAG | 2 cut(s) | 737, 1019 |
| GlaI | GCGC | 1 cut(s) | 84 |
| GluI | GCNGC | 2 cut(s) | 81, 199 |
| GsuI | CTGGAG | 3 cut(s) | 495, 525, 800 |
| HaeIII | GGCC | 3 cut(s) | 588, 1130, 1156 |
| HapII | CCGG | 1 cut(s) | 337 |
| HgaI | GACGC | 1 cut(s) | 743 |
| HhaI | GCGC | 1 cut(s) | 85 |
| Hin1I | GRCGYC | 1 cut(s) | 754 |
| Hin1II | CATG | 2 cut(s) | 79, 1108 |
| Hin6I | GCGC | 1 cut(s) | 83 |
| HinP1I | GCGC | 1 cut(s) | 83 |
| HincII | GTYRAC | 3 cut(s) | 670, 901, 1122 |
| HindII | GTYRAC | 3 cut(s) | 670, 901, 1122 |
| HindIII | AAGCTT | 1 cut(s) | 380 |
| HinfI | GANTC | 8 cut(s) | 34, 48, 65, 158, 293, 309, 488, 1083 |
| HpaII | CCGG | 1 cut(s) | 337 |
| HphI | GGTGA | 1 cut(s) | 668 |
| Hpy166II | GTNNAC | 3 cut(s) | 670, 901, 1122 |
| Hpy188I | TCNGA | 4 cut(s) | 57, 90, 360, 469 |
| Hpy188III | TCNNGA | 4 cut(s) | 290, 507, 779, 1019 |
| Hpy8I | GTNNAC | 3 cut(s) | 670, 901, 1122 |
| Hpy99I | CGWCG | 1 cut(s) | 958 |
| HpyAV | CCTTC | 6 cut(s) | 137, 599, 901, 1054, 1120, 1141 |
| HpyCH4III | ACNGT | 1 cut(s) | 629 |
| HpyCH4IV | ACGT | 4 cut(s) | 220, 314, 724, 1150 |
| HpyCH4V | TGCA | 5 cut(s) | 99, 218, 237, 416, 863 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 105, 798, 860 |
| HpyF3I | CTNAG | 2 cut(s) | 119, 468 |
| HpySE526I | ACGT | 4 cut(s) | 220, 314, 724, 1150 |
| Hsp92I | GRCGYC | 1 cut(s) | 754 |
| Hsp92II | CATG | 2 cut(s) | 79, 1108 |
| HspAI | GCGC | 1 cut(s) | 83 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 844 |
| Kzo9I | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| LguI | GCTCTTC | 1 cut(s) | 270 |
| LmnI | GCTCC | 2 cut(s) | 509, 1149 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 185 |
| MaeI | CTAG | 2 cut(s) | 737, 1019 |
| MaeII | ACGT | 4 cut(s) | 220, 314, 724, 1150 |
| MaeIII | GTNAC | 3 cut(s) | 527, 656, 1039 |
| MalI | GATC | 7 cut(s) | 141, 321, 357, 606, 777, 786, 846 |
| MbiI | CCGCTC | 1 cut(s) | 93 |
| MboI | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| MboII | GAAGA | 6 cut(s) | 257, 451, 456, 845, 848, 851 |
| MflI | RGATCY | 2 cut(s) | 604, 784 |
| MhlI | GDGCHC | 1 cut(s) | 506 |
| MluCI | AATT | 9 cut(s) | 408, 433, 443, 517, 677, 695, 911, 933, 1171 |
| MlyI | GAGTC | 2 cut(s) | 167, 497 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1130 |
| MseI | TTAA | 5 cut(s) | 188, 516, 936, 1113, 1174 |
| MspI | CCGG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 4 cut(s) | 338, 543, 976, 1092 |
| MvaI | CCWGG | 3 cut(s) | 543, 976, 1092 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 105, 798, 860 |
| NciI | CCSGG | 1 cut(s) | 338 |
| NdeI | CATATG | 1 cut(s) | 163 |
| NdeII | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| NlaIII | CATG | 2 cut(s) | 79, 1108 |
| NlaIV | GGNNCC | 3 cut(s) | 606, 786, 1102 |
| NmuCI | GTSAC | 3 cut(s) | 527, 656, 1039 |
| PceI | AGGCCT | 1 cut(s) | 1130 |
| PciSI | GCTCTTC | 1 cut(s) | 270 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 311, 672 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1130 |
| PfeI | GAWTC | 6 cut(s) | 34, 48, 65, 293, 309, 1083 |
| PflFI | GACNNNGTC | 1 cut(s) | 662 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 255, 1097 |
| PfoI | TCCNGGA | 1 cut(s) | 1090 |
| PkrI | GCNGC | 2 cut(s) | 82, 200 |
| PleI | GAGTC | 2 cut(s) | 166, 496 |
| PmaCI | CACGTG | 2 cut(s) | 221, 315 |
| PmlI | CACGTG | 2 cut(s) | 221, 315 |
| PpsI | GAGTC | 2 cut(s) | 166, 496 |
| Ppu21I | YACGTR | 2 cut(s) | 221, 315 |
| PshBI | ATTAAT | 1 cut(s) | 936 |
| Psp124BI | GAGCTC | 1 cut(s) | 506 |
| Psp6I | CCWGG | 3 cut(s) | 541, 974, 1090 |
| PspCI | CACGTG | 2 cut(s) | 221, 315 |
| PspGI | CCWGG | 3 cut(s) | 541, 974, 1090 |
| PspN4I | GGNNCC | 3 cut(s) | 606, 786, 1102 |
| PsuI | RGATCY | 2 cut(s) | 604, 784 |
| PsyI | GACNNNGTC | 1 cut(s) | 662 |
| RsaI | GTAC | 4 cut(s) | 300, 367, 395, 538 |
| RsaNI | GTAC | 4 cut(s) | 299, 366, 394, 537 |
| SacI | GAGCTC | 1 cut(s) | 506 |
| SapI | GCTCTTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 5 cut(s) | 188, 516, 936, 1113, 1174 |
| SatI | GCNGC | 2 cut(s) | 81, 199 |
| Sau3AI | GATC | 7 cut(s) | 139, 319, 355, 604, 775, 784, 844 |
| ScaI | AGTACT | 2 cut(s) | 300, 367 |
| SchI | GAGTC | 2 cut(s) | 167, 497 |
| ScrFI | CCNGG | 4 cut(s) | 338, 543, 976, 1092 |
| SduI | GDGCHC | 1 cut(s) | 506 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| Sse9I | AATT | 9 cut(s) | 408, 433, 443, 517, 677, 695, 911, 933, 1171 |
| SseBI | AGGCCT | 1 cut(s) | 1130 |
| SsiI | CCGC | 5 cut(s) | 93, 760, 790, 854, 982 |
| SspI | AATATT | 1 cut(s) | 649 |
| SspMI | CTAG | 2 cut(s) | 737, 1019 |
| SstI | GAGCTC | 1 cut(s) | 506 |
| StuI | AGGCCT | 1 cut(s) | 1130 |
| StyD4I | CCNGG | 4 cut(s) | 336, 541, 974, 1090 |
| StyI | CCWWGG | 1 cut(s) | 736 |
| TaaI | ACNGT | 1 cut(s) | 629 |
| TaiI | ACGT | 4 cut(s) | 223, 317, 727, 1153 |
| TaqI | TCGA | 6 cut(s) | 156, 500, 635, 748, 831, 1075 |
| TasI | AATT | 9 cut(s) | 408, 433, 443, 517, 677, 695, 911, 933, 1171 |
| TatI | WGTACW | 3 cut(s) | 298, 365, 536 |
| TfiI | GAWTC | 6 cut(s) | 34, 48, 65, 293, 309, 1083 |
| Tru1I | TTAA | 5 cut(s) | 188, 516, 936, 1113, 1174 |
| Tru9I | TTAA | 5 cut(s) | 188, 516, 936, 1113, 1174 |
| TseFI | GTSAC | 3 cut(s) | 527, 656, 1039 |
| TseI | GCWGC | 2 cut(s) | 80, 198 |
| Tsp45I | GTSAC | 3 cut(s) | 527, 656, 1039 |
| TspDTI | ATGAA | 3 cut(s) | 61, 275, 890 |
| TspGWI | ACGGA | 1 cut(s) | 597 |
| Tth111I | GACNNNGTC | 1 cut(s) | 662 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 255, 1097 |
| VspI | ATTAAT | 1 cut(s) | 936 |
| XapI | RAATTY | 2 cut(s) | 408, 443 |
| XbaI | TCTAGA | 1 cut(s) | 1018 |
| XmaJI | CCTAGG | 1 cut(s) | 736 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1130 |
| XspI | CTAG | 2 cut(s) | 737, 1019 |
| ZrmI | AGTACT | 2 cut(s) | 300, 367 |