RH3CG022600

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000270
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG022600.1

Sequence Viewer

Length: 705 bp
ATGAAAGATTTCAACCAGGACTGGGTTTTTATGTGGAGATCTTCTCTTCTGAGACAGCCTGGCGTTGCTTTCAATGGCAAGTTATATTGGTACAATGATGGTGGCTTTACTTTTGAGTTGGATCCGTTCAATATTAGTAGTGGTGGTGATATTATTAATAACAAGCGTCGTTTCAATGTACAACCGAGACTATGCTTCCATTTATGTGTGTGCCAAGGGCGTTTGCGAATGTATCCATTCTCTATAGCGGGATATATTAGCATTTGGGAATTGAATGAAAAATCCGGCAAATCGGAATGGTGCTTGGTATTTGACAAAGTTTCTCTGTTGCATATGGTTTCCAAAGATCCTAAGATCACTGAAGAAAAATCACGCAAATTGGACGTGTTAGGTTTCCTCCCAAGCAATGAAGATATCATATATTTGAAATTTCCTGAACAGATAGTGATGTGCAATCTTCGTGAAAACACTTTAGAGAAGAGTCCGGTTGATCCACCTATAAACATTCGATTTGGTTTCAGTTGCTATGTTAGTCAGTTTGCAGTTGATCGCTCTACAACCATCTATCCATATGTGCTCCCGTGGTGGCCTACACCAGTTCCTAGAATCAATAAACCAAAGGAGCGCCAGATCAAGGTCTTGAAACAGTTTGATATATTCCTACCTTCAGAGAGCTTCTTGATTGTGTCGTCCAAAACATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

234

Amino Acids

27.39

Weight (kDa)

8.97

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 248
AclWI GGATC 4 cut(s) 116, 129, 341, 485
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 2 cut(s) 381, 651
AfaI GTAC 2 cut(s) 92, 180
AfiI CCNNNNNNNGG 2 cut(s) 22, 634
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 7 cut(s) 13, 73, 130, 175, 274, 427, 643
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 2 cut(s) 15, 58
AluBI AGCT 1 cut(s) 675
AluI AGCT 1 cut(s) 675
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 46, 181
AlwI GGATC 4 cut(s) 116, 129, 341, 485
AoxI GGCC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 627
AsuHPI GGTGA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 579
BccI CCATC 2 cut(s) 92, 569
BciT130I CCWGG 2 cut(s) 17, 60
BciVI GTATCC 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 46, 181
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 628
BfuI GTATCC 1 cut(s) 243
BglII AGATCT 1 cut(s) 38
Bme1390I CCNGG 2 cut(s) 17, 60
BmgBI CACGTC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 17, 60
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BsaJI CCNNGG 2 cut(s) 214, 581
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 634
Bse1I ACTGG 2 cut(s) 26, 596
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 17, 60
BseDI CCNNGG 2 cut(s) 214, 581
BseLI CCNNNNNNNGG 2 cut(s) 22, 634
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 26, 596
BshFI GGCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 2 cut(s) 285, 485
BslI CCNNNNNNNGG 2 cut(s) 22, 634
BsmAI GTCTC 2 cut(s) 46, 181
BsnI GGCC 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 579
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 4 cut(s) 116, 129, 341, 485
BsrDI GCAATG 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 2 cut(s) 26, 596
BssECI CCNNGG 2 cut(s) 214, 581
BssMI GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 17, 60
Bst4CI ACNGT 1 cut(s) 648
Bst6I CTCTTC 2 cut(s) 51, 473
BstAUI TGTACA 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 50, 351
BstDSI CCRYGG 1 cut(s) 581
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 7 cut(s) 41, 124, 349, 357, 493, 550, 633
BstMAI GTCTC 2 cut(s) 46, 181
BstMBI GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
BstNI CCWGG 2 cut(s) 17, 60
BstSCI CCNGG 2 cut(s) 15, 58
BstSFI CTRYAG 1 cut(s) 243
BstX2I RGATCY 3 cut(s) 38, 121, 346
BstYI RGATCY 3 cut(s) 38, 121, 346
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 589
BtgI CCRYGG 1 cut(s) 581
BtrI CACGTC 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 357
CfoI GCGC 1 cut(s) 627
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 91, 179
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviJI RGCY 4 cut(s) 58, 105, 589, 675
CviKI_1 RGCY 4 cut(s) 58, 105, 589, 675
CviQI GTAC 2 cut(s) 91, 179
DdeI CTNAG 2 cut(s) 50, 351
DpnI GATC 7 cut(s) 40, 123, 348, 356, 492, 549, 632
DpnII GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
Eam1104I CTCTTC 2 cut(s) 51, 473
EarI CTCTTC 2 cut(s) 51, 473
Eco130I CCWWGG 1 cut(s) 214
Eco32I GATATC 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 381, 651
EcoRII CCWGG 2 cut(s) 15, 58
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 2 cut(s) 333, 571
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 626
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 1 cut(s) 589
HapII CCGG 2 cut(s) 285, 485
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 627
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HinfI GANTC 2 cut(s) 481, 606
HpaII CCGG 2 cut(s) 285, 485
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 51, 295, 670
Hpy188III TCNNGA 5 cut(s) 434, 461, 640, 679, 702
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 675
HpyCH4III ACNGT 1 cut(s) 648
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 3 cut(s) 331, 453, 542
HpyF3I CTNAG 2 cut(s) 50, 351
HpySE526I ACGT 1 cut(s) 384
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
LmnI GCTCC 2 cut(s) 582, 622
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 384
MalI GATC 7 cut(s) 40, 123, 348, 356, 492, 549, 632
MboI GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
MboII GAAGA 6 cut(s) 33, 38, 374, 422, 449, 490
MflI RGATCY 3 cut(s) 38, 121, 346
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 3 cut(s) 269, 377, 428
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 2 cut(s) 285, 485
MspR9I CCNGG 2 cut(s) 17, 60
MvaI CCWGG 2 cut(s) 17, 60
NdeI CATATG 2 cut(s) 333, 571
NdeII GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
NlaIV GGNNCC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 606
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 15, 58
PspGI CCWGG 2 cut(s) 15, 58
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 3 cut(s) 38, 121, 346
RsaI GTAC 2 cut(s) 92, 180
RsaNI GTAC 2 cut(s) 91, 179
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 7 cut(s) 38, 121, 346, 354, 490, 547, 630
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 17, 60
SduI GDGCHC 1 cut(s) 579
SetI ASST 6 cut(s) 387, 394, 499, 639, 667, 677
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 269, 377, 428
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 15, 58
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 648
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 508
TasI AATT 3 cut(s) 269, 377, 428
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 17, 291, 423
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 364
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.