Prupe.4G052100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000270
Physical Location & Seq
Reverse (-)
2509934 .. 2511944
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G052100.1

Sequence Viewer

Length: 1110 bp
ATGAATATTAGTCTTGATGATCTCCCTGAGTTTGTTTTGCTAGAAATTCTTTCCCGACTCCCTCCTAAGTGTGCGGCTCGATGCATGTGTGTCTCCAAACGTTGGTTCAGTCTCATCTTTGATCCTTATTTTTTTCGACACTATTTCCAAATCCAAAAAGGCGTACAACAAGAAGAAGAAGTACATTTCTTTCCACGTCATCATCGGAGCAGCCCGATGAAGATGAACCATGTGAGAGGAAATTTTTTTTCCATGTCATCGGAGCCTGATCATCAACCACATGAACATGAGTTGTCTCTGAGTTTCCTCCCTTGTTTCCAAGCTGATATTGTTGATCCTTATAAAGGTGAGCCAGTTGTGATAGGAGCATATAATGATTTAATTTTGTGTTGTGCAACCACGTATTATCAACGTGATTACTACATCTGCAATCCATACACCAAGCAATGGGATGCTCTCCCTCTCCCCCCCGACGTGGACCTCGACGTGGATCAGGAGGATGCCACAAGACTTGTAAATAACCCACGGAGGTTTTGTTTTAGCAAATTGGCTCCCTATCCCGGGGTTGCTCACAATGGAAGCTTGTATTGGTGGAGGGATGTTGAGGGCTTTACTATTGGGTTGGATCTCTACTCTCCTCGTGACCAGCTTGGTGATAGTATATATGTCTTTCGTTACATTGATAAGCCTGAAATCGAATCTCGAAGGTTTGACTTCCTAAGTGAGTGTGGAGGAGGAGGAGAAGGGTGTCTGCGGATGTGCGTCTTCTCCTCTACCAATTTAGATCATGATGATCCTGCTCACACTCTAGGTGCTGTGAGTGTTTGGGAGTTGAAAGACGATGGTCATGGTGTTTGGGATTGGGATTGGAAAGGTCATGGTCAAGTCAAGGAGACTGCAAAATGGTGTTTGGTAGACACAGCTCGCATGTTCGACTTAATCTCGGCAAATCCTCTTACCAAAAAGTGGAACGATGAGCACCATGGGAGGACAAAAAGGGTTTTGGTGCTAGCTTTTGATCCAAATAATGAGGATGTCTTGTATCTACAATTGTTTGGTCGCATTGTCATGTACAACATTGGTGCAAGAACGTTAAAGGATACCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

370

Amino Acids

42.85

Weight (kDa)

5.49

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB7I CCANNNNNTGG 3 cut(s) 102, 447, 966
AccI GTMKAC 1 cut(s) 915
AciI CCGC 2 cut(s) 74, 754
AclI AACGTT 2 cut(s) 100, 1091
AclWI GGATC 6 cut(s) 116, 329, 498, 633, 788, 1013
AcsI RAATTY 2 cut(s) 45, 241
AfaI GTAC 3 cut(s) 165, 183, 1073
AfiI CCNNNNNNNGG 8 cut(s) 102, 344, 447, 475, 487, 560, 561, 966
AgsI TTSAA 1 cut(s) 835
AjiI CACGTC 3 cut(s) 197, 475, 487
AjuI GAANNNNNNNTTGG 4 cut(s) 89, 121, 571, 603
AluBI AGCT 5 cut(s) 323, 582, 649, 923, 1013
AluI AGCT 5 cut(s) 323, 582, 649, 923, 1013
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 4 cut(s) 97, 116, 300, 887
AlwI GGATC 6 cut(s) 116, 329, 498, 633, 788, 1013
Ama87I CYCGRG 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 2 cut(s) 45, 241
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 2 cut(s) 561, 562
AsuHPI GGTGA 2 cut(s) 359, 665
AsuNHI GCTAGC 1 cut(s) 1009
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 478
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 757
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 836
BciVI GTATCC 1 cut(s) 1093
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 2 cut(s) 561, 562
BcoDI GTCTC 4 cut(s) 97, 116, 300, 887
BfaI CTAG 3 cut(s) 41, 809, 1010
BfuI GTATCC 1 cut(s) 1093
BisI GCNGC 2 cut(s) 75, 211
BlsI GCNGC 2 cut(s) 76, 212
Bme1390I CCNGG 2 cut(s) 561, 562
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 560
BmgBI CACGTC 3 cut(s) 197, 475, 487
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 264, 552
BmrFI CCNGG 2 cut(s) 561, 562
BmsI GCATC 3 cut(s) 71, 442, 490
BmtI GCTAGC 1 cut(s) 1013
BoxI GACNNNNGTC 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 757
BpuMI CCSGG 2 cut(s) 561, 562
BsaAI YACGTR 1 cut(s) 402
BsaJI CCNNGG 4 cut(s) 524, 560, 561, 982
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 8 cut(s) 102, 344, 447, 475, 487, 560, 561, 966
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 524, 560, 561, 982
BseGI GGATG 5 cut(s) 457, 505, 604, 762, 1039
BseLI CCNNNNNNNGG 8 cut(s) 102, 344, 447, 475, 487, 560, 561, 966
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 18, 290
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 5 cut(s) 627, 747, 750, 753, 760
BseXI GCAGC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 561
BslI CCNNNNNNNGG 8 cut(s) 102, 344, 447, 475, 487, 560, 561, 966
BsmAI GTCTC 4 cut(s) 97, 116, 300, 887
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 2 cut(s) 74, 754
BspCNI CTCAG 2 cut(s) 19, 291
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 264, 552
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 6 cut(s) 116, 329, 498, 633, 788, 1013
BsrDI GCAATG 1 cut(s) 452
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 524, 560, 561, 982
BssMI GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 982
Bst2BI CACGAG 1 cut(s) 639
BstAUI TGTACA 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 925, 1011
BstDEI CTNAG 5 cut(s) 27, 66, 299, 719, 1107
BstDSI CCRYGG 2 cut(s) 524, 982
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 5 cut(s) 457, 505, 604, 762, 1039
BstKTI GATC 9 cut(s) 22, 124, 271, 337, 493, 628, 787, 796, 1021
BstMAI GTCTC 4 cut(s) 97, 116, 300, 887
BstMBI GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
BstNSI RCATGY 2 cut(s) 88, 931
BstPAI GACNNNNGTC 1 cut(s) 843
BstSCI CCNGG 2 cut(s) 559, 560
BstV1I GCAGC 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuI GTATCC 1 cut(s) 1093
BtgI CCRYGG 2 cut(s) 524, 982
BtrI CACGTC 3 cut(s) 197, 475, 487
BtsCI GGATG 5 cut(s) 457, 505, 604, 762, 1039
Cac8I GCNNGC 2 cut(s) 925, 1011
CciI TCATGA 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 478
Cfr9I CCCGGG 1 cut(s) 560
CseI GACGC 1 cut(s) 751
Csp6I GTAC 3 cut(s) 164, 182, 1072
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviQI GTAC 3 cut(s) 164, 182, 1072
DdeI CTNAG 5 cut(s) 27, 66, 299, 719, 1107
DpnI GATC 9 cut(s) 21, 123, 270, 336, 492, 627, 786, 795, 1020
DpnII GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
Eco130I CCWWGG 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 982
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 982
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 75, 211
FokI GGATG 5 cut(s) 464, 512, 611, 769, 1046
Fsp4HI GCNGC 2 cut(s) 75, 211
FspBI CTAG 3 cut(s) 41, 809, 1010
GluI GCNGC 2 cut(s) 75, 211
HapII CCGG 1 cut(s) 561
HgaI GACGC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 2 cut(s) 57, 698
HpaII CCGG 1 cut(s) 561
HphI GGTGA 2 cut(s) 359, 665
Hpy166II GTNNAC 2 cut(s) 478, 916
Hpy188I TCNGA 3 cut(s) 207, 262, 300
Hpy188III TCNNGA 6 cut(s) 14, 54, 494, 641, 702, 788
Hpy8I GTNNAC 2 cut(s) 478, 916
Hpy99I CGWCG 2 cut(s) 476, 488
HpyAV CCTTC 2 cut(s) 699, 737
HpyCH4IV ACGT 7 cut(s) 100, 196, 401, 412, 474, 486, 1091
HpyCH4V TGCA 5 cut(s) 84, 395, 429, 899, 1085
HpyF3I CTNAG 5 cut(s) 27, 66, 299, 719, 1107
HpySE526I ACGT 7 cut(s) 100, 196, 401, 412, 474, 486, 1091
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
LmnI GCTCC 4 cut(s) 207, 262, 365, 556
LpnPI CCDG 8 cut(s) 39, 279, 366, 479, 574, 659, 702, 810
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 3 cut(s) 71, 442, 490
MaeI CTAG 3 cut(s) 41, 809, 1010
MaeII ACGT 7 cut(s) 100, 196, 401, 412, 474, 486, 1091
MaeIII GTNAC 2 cut(s) 641, 674
MalI GATC 9 cut(s) 21, 123, 270, 336, 492, 627, 786, 795, 1020
MboI GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
MboII GAAGA 4 cut(s) 185, 188, 232, 757
MfeI CAATTG 1 cut(s) 1049
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 6 cut(s) 45, 241, 381, 545, 778, 1049
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 603
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 3 cut(s) 380, 938, 1094
MslI CAYNNNNRTG 2 cut(s) 285, 1067
MspI CCGG 1 cut(s) 561
MspR9I CCNGG 2 cut(s) 561, 562
MunI CAATTG 1 cut(s) 1049
NciI CCSGG 2 cut(s) 561, 562
NcoI CCATGG 1 cut(s) 982
NdeII GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
NheI GCTAGC 1 cut(s) 1009
NlaIV GGNNCC 2 cut(s) 264, 552
NmeAIII GCCGAG 1 cut(s) 923
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 2 cut(s) 88, 931
PagI TCATGA 1 cut(s) 787
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PfeI GAWTC 1 cut(s) 698
PflMI CCANNNNNTGG 3 cut(s) 102, 447, 966
PkrI GCNGC 2 cut(s) 76, 212
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 402
PshAI GACNNNNGTC 1 cut(s) 843
PsiI TTATAA 1 cut(s) 342
Psp1406I AACGTT 2 cut(s) 100, 1091
PspN4I GGNNCC 2 cut(s) 264, 552
PspPI GGNCC 1 cut(s) 478
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 3 cut(s) 165, 183, 1073
RsaNI GTAC 3 cut(s) 164, 182, 1072
RseI CAYNNNNRTG 2 cut(s) 285, 1067
SaqAI TTAA 3 cut(s) 380, 938, 1094
SatI GCNGC 2 cut(s) 75, 211
Sau3AI GATC 9 cut(s) 19, 121, 268, 334, 490, 625, 784, 793, 1018
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 561, 562
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 3 cut(s) 71, 442, 490
SinI GGWCC 1 cut(s) 478
SmaI CCCGGG 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 285, 1067
Sse9I AATT 6 cut(s) 45, 241, 381, 545, 778, 1049
SsiI CCGC 2 cut(s) 74, 754
SspI AATATT 1 cut(s) 7
SspMI CTAG 3 cut(s) 41, 809, 1010
StyD4I CCNGG 2 cut(s) 559, 560
StyI CCWWGG 1 cut(s) 982
TaiI ACGT 7 cut(s) 103, 199, 404, 415, 477, 489, 1094
TaqI TCGA 6 cut(s) 79, 136, 483, 696, 703, 933
TasI AATT 6 cut(s) 45, 241, 381, 545, 778, 1049
TatI WGTACW 2 cut(s) 181, 1071
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 3 cut(s) 380, 938, 1094
Tru9I TTAA 3 cut(s) 380, 938, 1094
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 17, 233, 239, 297
TspGWI ACGGA 1 cut(s) 541
TspMI CCCGGG 1 cut(s) 560
Van91I CCANNNNNTGG 3 cut(s) 102, 447, 966
VpaK11BI GGWCC 1 cut(s) 478
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 2 cut(s) 45, 241
XceI RCATGY 2 cut(s) 88, 931
XmaI CCCGGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 3 cut(s) 41, 809, 1010
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.