FvH4_4g17783

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000270
Physical Location & Seq
Forward (+)
21776664 .. 21777798
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17783.t1

Sequence Viewer

Length: 774 bp
ATGGAGAGAGATACATGTAGCAGCTCTCGGCTATTTTCTTCATTTGTGATTCCAGTTACTAGGTACATGTCGACAACTACATCTTCCGTAGCTTACAAGGGATTGTTATACTGGTGGAGCGATAATGGCCTATTACTTGAGTTGGATCTCTTCAAATCTGAAACAACCATGTACCGTTTCATTGAAGCGCCTAAGGATTATCGTAAAATTTATGGCGCATGTGATTTAGGGTTGCTAGGAGTAAGCGAAGGGCGTCTGCGGTTTTGCATTCATCGTGATTATCTCAGTCCAGGGGATCACGACGAGGGTCTGCAGTCATTTAGAGTTGGGGAGTTGAAACAAGTTGTCAAGGACAGCCAAGGCAGGCTCAAATGGCTAACCGACCGTGTTACTATAGATTGCAAAGATGTTGACGTCCCCATTCCAAACACGACTAAGGTCCTAGCTTTCCACCTAAACAATGATGATGTCGTATATATGAGTGATGGTAACAAAATTGTGACATGCAACCTTCGTGGAGGAAGGTTAGAGAAAACTGCAGCGACTCGAGTGAAGGGAACCTCTACTACGTACCCGTTTTCTCTTCCATGCCGGGATGATCCCCCAGCCGTTCAGGCCGCTCTGTCCGGGGAGATCGATGTTCATCTCCTCATCACCAAATTAAGGATTCGGGGACAACGGAAACTTGAGATTGCGAAAGTGAAGCAGTCGGTGGCGTGGTACTTGAAGAAGGCAGTGGGGATAGAGTTCGACAGCGGGAGGGCGGGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

258

Amino Acids

28.91

Weight (kDa)

8.94

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 71
AciI CCGC 4 cut(s) 259, 618, 756, 764
AclWI GGATC 3 cut(s) 153, 303, 593
AcsI RAATTY 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 253, 414
AfaI GTAC 4 cut(s) 65, 173, 572, 722
AfiI CCNNNNNNNGG 1 cut(s) 663
AflIII ACRYGT 2 cut(s) 14, 66
AgsI TTSAA 4 cut(s) 154, 185, 337, 727
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 24, 92, 446
AluI AGCT 3 cut(s) 24, 92, 446
AlwI GGATC 3 cut(s) 153, 303, 593
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 2 cut(s) 127, 615
ApeKI GCWGC 2 cut(s) 21, 539
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 2 cut(s) 190, 218
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 2 cut(s) 593, 628
AsuHPI GGTGA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 439
AxyI CCTNAGG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 770
BbvI GCAGC 2 cut(s) 33, 551
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 2 cut(s) 593, 628
BfaI CTAG 3 cut(s) 60, 236, 443
BfmI CTRYAG 3 cut(s) 311, 393, 537
BfoI RGCGCY 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 614
BisI GCNGC 3 cut(s) 22, 540, 618
BlsI GCNGC 3 cut(s) 23, 541, 619
Bme1390I CCNGG 3 cut(s) 291, 593, 628
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 3 cut(s) 291, 593, 628
BoxI GACNNNNGTC 2 cut(s) 306, 437
BpuEI CTTGAG 2 cut(s) 158, 707
BpuMI CCSGG 2 cut(s) 593, 628
Bsa29I ATCGAT 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 570
BsaBI GATNNNNATC 1 cut(s) 642
BsaHI GRCGYC 2 cut(s) 253, 414
BsaJI CCNNGG 3 cut(s) 290, 358, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 663
Bse1I ACTGG 2 cut(s) 53, 116
Bse21I CCTNAGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 3 cut(s) 290, 358, 627
BseGI GGATG 1 cut(s) 601
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 53, 116
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 2 cut(s) 33, 551
BseYI CCCAGC 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 129, 617
BshVI ATCGAT 1 cut(s) 636
BsiEI CGRYCG 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 2 cut(s) 592, 627
BslFI GGGAC 2 cut(s) 401, 687
BslI CCNNNNNNNGG 1 cut(s) 663
BsmFI GGGAC 2 cut(s) 401, 687
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 2 cut(s) 129, 617
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 770
Bsp143I GATC 4 cut(s) 145, 295, 598, 633
BspACI CCGC 4 cut(s) 259, 618, 756, 764
BspANI GGCC 2 cut(s) 129, 617
BspCNI CTCAG 1 cut(s) 297
BspDI ATCGAT 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 559
BspMAI CTGCAG 2 cut(s) 315, 541
BspPI GGATC 3 cut(s) 153, 303, 593
BsrBI CCGCTC 1 cut(s) 620
BsrI ACTGG 2 cut(s) 53, 116
BssECI CCNNGG 3 cut(s) 290, 358, 627
BssMI GATC 4 cut(s) 145, 295, 598, 633
BssNI GRCGYC 2 cut(s) 253, 414
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 176, 386
Bst6I CTCTTC 2 cut(s) 155, 588
BstACI GRCGYC 2 cut(s) 253, 414
BstBAI YACGTR 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 365, 766
BstDEI CTNAG 3 cut(s) 192, 284, 435
BstF5I GGATG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 190, 218
BstKTI GATC 4 cut(s) 148, 298, 601, 636
BstMBI GATC 4 cut(s) 145, 295, 598, 633
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 3 cut(s) 126, 373, 614
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 4 cut(s) 18, 70, 222, 507
BstPAI GACNNNNGTC 2 cut(s) 306, 437
BstSCI CCNGG 3 cut(s) 289, 591, 626
BstSFI CTRYAG 3 cut(s) 311, 393, 537
BstSLI GKGCMC 1 cut(s) 770
BstSNI TACGTA 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 33, 551
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 636
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 129, 617
BsuTUI ATCGAT 1 cut(s) 636
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 365, 766
CfoI GCGC 2 cut(s) 190, 218
Cfr13I GGNCC 1 cut(s) 439
ClaI ATCGAT 1 cut(s) 636
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 64, 172, 571, 721
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 6 cut(s) 15, 67, 169, 219, 504, 588
CviQI GTAC 4 cut(s) 64, 172, 571, 721
DdeI CTNAG 3 cut(s) 192, 284, 435
DpnI GATC 4 cut(s) 147, 297, 600, 635
DpnII GATC 4 cut(s) 145, 295, 598, 633
Eam1104I CTCTTC 2 cut(s) 155, 588
EarI CTCTTC 2 cut(s) 155, 588
Eco105I TACGTA 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 439
Eco81I CCTNAGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 6 cut(s) 18, 70, 172, 222, 507, 591
FaqI GGGAC 2 cut(s) 401, 687
FatI CATG 6 cut(s) 14, 66, 168, 218, 503, 587
FauI CCCGC 2 cut(s) 749, 757
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 22, 540, 618
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 3 cut(s) 22, 540, 618
FspBI CTAG 3 cut(s) 60, 236, 443
GlaI GCGC 2 cut(s) 189, 217
GluI GCNGC 3 cut(s) 22, 540, 618
GsaI CCCAGC 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 2 cut(s) 129, 617
HapII CCGG 2 cut(s) 592, 627
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 190, 218
Hin1I GRCGYC 2 cut(s) 253, 414
Hin1II CATG 6 cut(s) 18, 70, 172, 222, 507, 591
Hin6I GCGC 2 cut(s) 188, 216
HinP1I GCGC 2 cut(s) 188, 216
HincII GTYRAC 2 cut(s) 72, 412
HindII GTYRAC 2 cut(s) 72, 412
HinfI GANTC 3 cut(s) 49, 544, 667
HpaII CCGG 2 cut(s) 592, 627
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 2 cut(s) 72, 412
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 275, 299
Hpy8I GTNNAC 2 cut(s) 72, 412
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 5 cut(s) 242, 516, 521, 547, 724
HpyCH4III ACNGT 2 cut(s) 176, 386
HpyCH4IV ACGT 2 cut(s) 414, 569
HpyCH4V TGCA 5 cut(s) 267, 313, 402, 507, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 373, 614
HpyF3I CTNAG 3 cut(s) 192, 284, 435
HpySE526I ACGT 2 cut(s) 414, 569
Hsp92I GRCGYC 2 cut(s) 253, 414
Hsp92II CATG 6 cut(s) 18, 70, 172, 222, 507, 591
HspAI GCGC 2 cut(s) 188, 216
Kzo9I GATC 4 cut(s) 145, 295, 598, 633
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 9 cut(s) 66, 97, 276, 303, 349, 599, 605, 618, 640
Lsp1109I GCAGC 2 cut(s) 33, 551
MaeI CTAG 3 cut(s) 60, 236, 443
MaeII ACGT 2 cut(s) 414, 569
MaeIII GTNAC 4 cut(s) 55, 388, 488, 499
MalI GATC 4 cut(s) 147, 297, 600, 635
MbiI CCGCTC 1 cut(s) 620
MboI GATC 4 cut(s) 145, 295, 598, 633
MboII GAAGA 5 cut(s) 30, 75, 142, 575, 739
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 770
MluCI AATT 3 cut(s) 207, 495, 659
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 298, 512, 571, 659, 753
MseI TTAA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 756
MspI CCGG 2 cut(s) 592, 627
MspR9I CCNGG 3 cut(s) 291, 593, 628
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 126, 373, 614
NciI CCSGG 2 cut(s) 593, 628
NdeII GATC 4 cut(s) 145, 295, 598, 633
NlaIII CATG 6 cut(s) 18, 70, 172, 222, 507, 591
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 4 cut(s) 18, 70, 222, 507
PaeR7I CTCGAG 1 cut(s) 546
PciI ACATGT 2 cut(s) 14, 66
PctI GAATGC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 49, 667
PkrI GCNGC 3 cut(s) 23, 541, 619
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 570
PpuMI RGGWCCY 1 cut(s) 439
PscI ACATGT 2 cut(s) 14, 66
PshAI GACNNNNGTC 2 cut(s) 306, 437
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 439
PspPPI RGGWCCY 1 cut(s) 439
PspXI VCTCGAGB 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 550, 582
PstI CTGCAG 2 cut(s) 315, 541
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 4 cut(s) 65, 173, 572, 722
RsaNI GTAC 4 cut(s) 64, 172, 571, 721
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 3 cut(s) 22, 540, 618
Sau3AI GATC 4 cut(s) 145, 295, 598, 633
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 3 cut(s) 291, 593, 628
SduI GDGCHC 1 cut(s) 770
SfcI CTRYAG 3 cut(s) 311, 393, 537
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 546
SmlI CTYRAG 3 cut(s) 137, 546, 686
SmoI CTYRAG 3 cut(s) 137, 546, 686
SnaBI TACGTA 1 cut(s) 570
Sse9I AATT 3 cut(s) 207, 495, 659
SsiI CCGC 4 cut(s) 259, 618, 756, 764
SspMI CTAG 3 cut(s) 60, 236, 443
StyD4I CCNGG 3 cut(s) 289, 591, 626
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 176, 386
TaiI ACGT 2 cut(s) 417, 572
TaqI TCGA 4 cut(s) 71, 547, 636, 750
TasI AATT 3 cut(s) 207, 495, 659
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 2 cut(s) 49, 667
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 2 cut(s) 21, 539
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 4 cut(s) 30, 169, 260, 632
TspGWI ACGGA 2 cut(s) 76, 694
TspRI CASTG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 207
XceI RCATGY 4 cut(s) 18, 70, 222, 507
XhoI CTCGAG 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 71
XspI CTAG 3 cut(s) 60, 236, 443
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.