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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 129, 600 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 204, 675 |
| AccI | GTMKAC | 1 cut(s) | 1566 |
| AciI | CCGC | 1 cut(s) | 1141 |
| AclWI | GGATC | 5 cut(s) | 272, 743, 1022, 1035, 1483 |
| AcoI | YGGCCR | 1 cut(s) | 1499 |
| AcsI | RAATTY | 1 cut(s) | 1428 |
| AcvI | CACGTG | 1 cut(s) | 1389 |
| AfaI | GTAC | 2 cut(s) | 363, 1343 |
| AfeI | AGCGCT | 2 cut(s) | 322, 793 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 204, 348, 429, 675, 819, 1328 |
| AflII | CTTAAG | 1 cut(s) | 1594 |
| AgeI | ACCGGT | 1 cut(s) | 422 |
| AgsI | TTSAA | 7 cut(s) | 77, 548, 1036, 1304, 1439, 1615, 1628 |
| AhlI | ACTAGT | 2 cut(s) | 308, 779 |
| AjnI | CCWGG | 2 cut(s) | 1447, 1642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 976, 1008 |
| AluBI | AGCT | 4 cut(s) | 109, 580, 988, 1421 |
| AluI | AGCT | 4 cut(s) | 109, 580, 988, 1421 |
| Alw21I | GWGCWC | 2 cut(s) | 149, 620 |
| Alw26I | GTCTC | 2 cut(s) | 413, 884 |
| AlwI | GGATC | 5 cut(s) | 272, 743, 1022, 1035, 1483 |
| Aor51HI | AGCGCT | 2 cut(s) | 322, 793 |
| AoxI | GGCC | 5 cut(s) | 79, 550, 1461, 1499, 1640 |
| ApaI | GGGCCC | 1 cut(s) | 1465 |
| ApoI | RAATTY | 1 cut(s) | 1428 |
| AsiGI | ACCGGT | 1 cut(s) | 422 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 207, 678 |
| AspLEI | GCGC | 2 cut(s) | 323, 794 |
| AspS9I | GGNCC | 3 cut(s) | 1461, 1462, 1640 |
| AsuC2I | CCSGG | 1 cut(s) | 1322 |
| AsuHPI | GGTGA | 3 cut(s) | 437, 457, 908 |
| AsuII | TTCGAA | 1 cut(s) | 1754 |
| BaeGI | GKGCMC | 2 cut(s) | 1151, 1465 |
| BalI | TGGCCA | 1 cut(s) | 1501 |
| BamHI | GGATCC | 1 cut(s) | 1027 |
| BanII | GRGCYC | 1 cut(s) | 1465 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 354, 386 |
| BauI | CACGAG | 1 cut(s) | 1532 |
| BbrPI | CACGTG | 1 cut(s) | 1389 |
| BbsI | GAAGAC | 4 cut(s) | 206, 306, 677, 777 |
| Bbv12I | GWGCWC | 2 cut(s) | 149, 620 |
| BccI | CCATC | 4 cut(s) | 922, 1211, 1261, 1661 |
| BciT130I | CCWGG | 2 cut(s) | 1449, 1644 |
| BciVI | GTATCC | 2 cut(s) | 921, 1445 |
| BcnI | CCSGG | 1 cut(s) | 1322 |
| BcoDI | GTCTC | 2 cut(s) | 413, 884 |
| BcuI | ACTAGT | 2 cut(s) | 308, 779 |
| BfaI | CTAG | 3 cut(s) | 309, 780, 1783 |
| BfoI | RGCGCY | 2 cut(s) | 324, 795 |
| BfrI | CTTAAG | 1 cut(s) | 1594 |
| BfuI | GTATCC | 2 cut(s) | 921, 1445 |
| Bme1390I | CCNGG | 3 cut(s) | 1322, 1449, 1644 |
| BmgT120I | GGNCC | 3 cut(s) | 1461, 1462, 1640 |
| BmiI | GGNNCC | 3 cut(s) | 1029, 1463, 1464 |
| BmrFI | CCNGG | 3 cut(s) | 1322, 1449, 1644 |
| BmsI | GCATC | 2 cut(s) | 1069, 1084 |
| BoxI | GACNNNNGTC | 1 cut(s) | 458 |
| BpiI | GAAGAC | 4 cut(s) | 206, 306, 677, 777 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1467 |
| Bpu14I | TTCGAA | 1 cut(s) | 1754 |
| BpuMI | CCSGG | 1 cut(s) | 1322 |
| BsaAI | YACGTR | 1 cut(s) | 1389 |
| BsaI | GGTCTC | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 4 cut(s) | 198, 669, 1493, 1643 |
| BsaWI | WCCGGW | 1 cut(s) | 422 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 204, 348, 429, 675, 819, 1328 |
| Bse118I | RCCGGY | 1 cut(s) | 422 |
| Bse1I | ACTGG | 1 cut(s) | 898 |
| Bse3DI | GCAATG | 2 cut(s) | 985, 1399 |
| BseBI | CCWGG | 2 cut(s) | 1449, 1644 |
| BseDI | CCNNGG | 4 cut(s) | 198, 669, 1493, 1643 |
| BseGI | GGATG | 4 cut(s) | 5, 473, 1149, 1222 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 204, 348, 429, 675, 819, 1328 |
| BseMI | GCAATG | 2 cut(s) | 985, 1399 |
| BseMII | CTCAG | 2 cut(s) | 555, 1458 |
| BseNI | ACTGG | 1 cut(s) | 898 |
| BseSI | GKGCMC | 2 cut(s) | 1151, 1465 |
| BsgI | GTGCAG | 1 cut(s) | 373 |
| BshFI | GGCC | 5 cut(s) | 81, 552, 1463, 1501, 1642 |
| BshTI | ACCGGT | 1 cut(s) | 422 |
| BsiHKAI | GWGCWC | 2 cut(s) | 149, 620 |
| BsiSI | CCGG | 2 cut(s) | 423, 1322 |
| BslFI | GGGAC | 2 cut(s) | 136, 607 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 204, 348, 429, 675, 819, 1328 |
| BsmAI | GTCTC | 2 cut(s) | 413, 884 |
| BsmFI | GGGAC | 2 cut(s) | 136, 607 |
| BsnI | GGCC | 5 cut(s) | 81, 552, 1463, 1501, 1642 |
| Bso31I | GGTCTC | 1 cut(s) | 413 |
| Bsp119I | TTCGAA | 1 cut(s) | 1754 |
| Bsp120I | GGGCCC | 1 cut(s) | 1461 |
| Bsp1286I | GDGCHC | 4 cut(s) | 149, 620, 1151, 1465 |
| Bsp143I | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| Bsp19I | CCATGG | 1 cut(s) | 1493 |
| BspACI | CCGC | 1 cut(s) | 1141 |
| BspANI | GGCC | 5 cut(s) | 81, 552, 1463, 1501, 1642 |
| BspCNI | CTCAG | 2 cut(s) | 556, 1459 |
| BspLI | GGNNCC | 3 cut(s) | 1029, 1463, 1464 |
| BspPI | GGATC | 5 cut(s) | 272, 743, 1022, 1035, 1483 |
| BspT104I | TTCGAA | 1 cut(s) | 1754 |
| BspTI | CTTAAG | 1 cut(s) | 1594 |
| BspTNI | GGTCTC | 1 cut(s) | 413 |
| BsrDI | GCAATG | 2 cut(s) | 985, 1399 |
| BsrFI | RCCGGY | 1 cut(s) | 422 |
| BsrI | ACTGG | 1 cut(s) | 898 |
| BssAI | RCCGGY | 1 cut(s) | 422 |
| BssECI | CCNNGG | 4 cut(s) | 198, 669, 1493, 1643 |
| BssMI | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| BssSI | CACGAG | 1 cut(s) | 1532 |
| BssT1I | CCWWGG | 3 cut(s) | 198, 669, 1493 |
| Bst2BI | CACGAG | 1 cut(s) | 1532 |
| Bst2UI | CCWGG | 2 cut(s) | 1449, 1644 |
| Bst4CI | ACNGT | 1 cut(s) | 1555 |
| Bst6I | CTCTTC | 1 cut(s) | 1623 |
| BstAFI | CTTAAG | 1 cut(s) | 1594 |
| BstBAI | YACGTR | 1 cut(s) | 1389 |
| BstBI | TTCGAA | 1 cut(s) | 1754 |
| BstC8I | GCNNGC | 8 cut(s) | 40, 149, 511, 620, 976, 1048, 1174, 1701 |
| BstDEI | CTNAG | 3 cut(s) | 564, 921, 1467 |
| BstDSI | CCRYGG | 1 cut(s) | 1493 |
| BstF5I | GGATG | 4 cut(s) | 5, 473, 1149, 1222 |
| BstH2I | RGCGCY | 2 cut(s) | 324, 795 |
| BstHHI | GCGC | 2 cut(s) | 323, 794 |
| BstKTI | GATC | 4 cut(s) | 280, 751, 1030, 1491 |
| BstMAI | GTCTC | 2 cut(s) | 413, 884 |
| BstMBI | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 48, 260, 519, 731, 975, 994 |
| BstNI | CCWGG | 2 cut(s) | 1449, 1644 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 458 |
| BstSCI | CCNGG | 3 cut(s) | 1320, 1447, 1642 |
| BstSLI | GKGCMC | 2 cut(s) | 1151, 1465 |
| BstV2I | GAAGAC | 4 cut(s) | 206, 306, 677, 777 |
| BstX2I | RGATCY | 1 cut(s) | 1027 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1217 |
| BstYI | RGATCY | 1 cut(s) | 1027 |
| BsuI | GTATCC | 2 cut(s) | 921, 1445 |
| BsuRI | GGCC | 5 cut(s) | 81, 552, 1463, 1501, 1642 |
| BtgI | CCRYGG | 1 cut(s) | 1493 |
| BtgZI | GCGATG | 1 cut(s) | 1065 |
| BtsCI | GGATG | 4 cut(s) | 5, 473, 1149, 1222 |
| BtsIMutI | CAGTG | 2 cut(s) | 965, 1551 |
| Cac8I | GCNNGC | 8 cut(s) | 40, 149, 511, 620, 976, 1048, 1174, 1701 |
| CfoI | GCGC | 2 cut(s) | 323, 794 |
| Cfr10I | RCCGGY | 1 cut(s) | 422 |
| Cfr13I | GGNCC | 3 cut(s) | 1461, 1462, 1640 |
| Csp6I | GTAC | 2 cut(s) | 362, 1342 |
| CspAI | ACCGGT | 1 cut(s) | 422 |
| CviAII | CATG | 5 cut(s) | 83, 469, 554, 1328, 1494 |
| CviQI | GTAC | 2 cut(s) | 362, 1342 |
| DdeI | CTNAG | 3 cut(s) | 564, 921, 1467 |
| DpnI | GATC | 4 cut(s) | 279, 750, 1029, 1490 |
| DpnII | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| EaeI | YGGCCR | 1 cut(s) | 1499 |
| Eam1104I | CTCTTC | 1 cut(s) | 1623 |
| EarI | CTCTTC | 1 cut(s) | 1623 |
| Eco130I | CCWWGG | 3 cut(s) | 198, 669, 1493 |
| Eco24I | GRGCYC | 1 cut(s) | 1465 |
| Eco31I | GGTCTC | 1 cut(s) | 413 |
| Eco47III | AGCGCT | 2 cut(s) | 322, 793 |
| Eco72I | CACGTG | 1 cut(s) | 1389 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1462, 1640 |
| EcoRII | CCWGG | 2 cut(s) | 1447, 1642 |
| EcoT14I | CCWWGG | 3 cut(s) | 198, 669, 1493 |
| EcoT38I | GRGCYC | 1 cut(s) | 1465 |
| ErhI | CCWWGG | 3 cut(s) | 198, 669, 1493 |
| FaeI | CATG | 5 cut(s) | 86, 472, 557, 1331, 1497 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 958, 990, 1749, 1781 |
| FaqI | GGGAC | 2 cut(s) | 136, 607 |
| FatI | CATG | 5 cut(s) | 82, 468, 553, 1327, 1493 |
| FauNDI | CATATG | 2 cut(s) | 182, 653 |
| FblI | GTMKAC | 1 cut(s) | 1566 |
| FokI | GGATG | 3 cut(s) | 460, 1156, 1229 |
| FriOI | GRGCYC | 1 cut(s) | 1465 |
| FspBI | CTAG | 3 cut(s) | 309, 780, 1783 |
| GlaI | GCGC | 2 cut(s) | 322, 793 |
| HaeII | RGCGCY | 2 cut(s) | 324, 795 |
| HaeIII | GGCC | 5 cut(s) | 81, 552, 1463, 1501, 1642 |
| HapII | CCGG | 2 cut(s) | 423, 1322 |
| HhaI | GCGC | 2 cut(s) | 323, 794 |
| Hin1II | CATG | 5 cut(s) | 86, 472, 557, 1331, 1497 |
| Hin6I | GCGC | 2 cut(s) | 321, 792 |
| HinP1I | GCGC | 2 cut(s) | 321, 792 |
| HinfI | GANTC | 5 cut(s) | 208, 267, 679, 738, 1713 |
| HpaII | CCGG | 2 cut(s) | 423, 1322 |
| HphI | GGTGA | 3 cut(s) | 437, 457, 908 |
| Hpy166II | GTNNAC | 3 cut(s) | 1238, 1342, 1567 |
| Hpy188I | TCNGA | 6 cut(s) | 10, 418, 478, 715, 889, 1264 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 1400, 1532 |
| Hpy8I | GTNNAC | 3 cut(s) | 1238, 1342, 1567 |
| HpyAV | CCTTC | 2 cut(s) | 91, 562 |
| HpyCH4III | ACNGT | 1 cut(s) | 1555 |
| HpyCH4IV | ACGT | 3 cut(s) | 169, 640, 1388 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 48, 260, 519, 731, 975, 994 |
| HpyF3I | CTNAG | 3 cut(s) | 564, 921, 1467 |
| HpySE526I | ACGT | 3 cut(s) | 169, 640, 1388 |
| Hsp92II | CATG | 5 cut(s) | 86, 472, 557, 1331, 1497 |
| HspAI | GCGC | 2 cut(s) | 321, 792 |
| Kzo9I | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| LweI | GCATC | 2 cut(s) | 1069, 1084 |
| MaeI | CTAG | 3 cut(s) | 309, 780, 1783 |
| MaeII | ACGT | 3 cut(s) | 169, 640, 1388 |
| MaeIII | GTNAC | 3 cut(s) | 115, 586, 1384 |
| MalI | GATC | 4 cut(s) | 279, 750, 1029, 1490 |
| MboI | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| MfeI | CAATTG | 1 cut(s) | 1610 |
| MflI | RGATCY | 1 cut(s) | 1027 |
| MhlI | GDGCHC | 4 cut(s) | 149, 620, 1151, 1465 |
| MlsI | TGGCCA | 1 cut(s) | 1501 |
| MluCI | AATT | 6 cut(s) | 187, 658, 1014, 1428, 1509, 1610 |
| MluNI | TGGCCA | 1 cut(s) | 1501 |
| MmeI | TCCRAC | 2 cut(s) | 1005, 1538 |
| Mox20I | TGGCCA | 1 cut(s) | 1501 |
| MroXI | GAANNNNTTC | 2 cut(s) | 207, 678 |
| MscI | TGGCCA | 1 cut(s) | 1501 |
| MseI | TTAA | 8 cut(s) | 294, 336, 765, 807, 1295, 1581, 1595, 1605 |
| MslI | CAYNNNNRTG | 4 cut(s) | 87, 558, 1119, 1665 |
| Msp20I | TGGCCA | 1 cut(s) | 1501 |
| MspCI | CTTAAG | 1 cut(s) | 1594 |
| MspI | CCGG | 2 cut(s) | 423, 1322 |
| MspR9I | CCNGG | 3 cut(s) | 1322, 1449, 1644 |
| MunI | CAATTG | 1 cut(s) | 1610 |
| MvaI | CCWGG | 2 cut(s) | 1449, 1644 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 48, 260, 519, 731, 975, 994 |
| NciI | CCSGG | 1 cut(s) | 1322 |
| NcoI | CCATGG | 1 cut(s) | 1493 |
| NdeI | CATATG | 2 cut(s) | 182, 653 |
| NdeII | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| NlaIII | CATG | 5 cut(s) | 86, 472, 557, 1331, 1497 |
| NlaIV | GGNNCC | 3 cut(s) | 1029, 1463, 1464 |
| NmeAIII | GCCGAG | 3 cut(s) | 118, 367, 838 |
| NmuCI | GTSAC | 3 cut(s) | 115, 586, 1384 |
| NspV | TTCGAA | 1 cut(s) | 1754 |
| PdmI | GAANNNNTTC | 2 cut(s) | 207, 678 |
| PfeI | GAWTC | 5 cut(s) | 208, 267, 679, 738, 1713 |
| PflFI | GACNNNGTC | 2 cut(s) | 137, 608 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 204, 675 |
| PfoI | TCCNGGA | 1 cut(s) | 1447 |
| PinAI | ACCGGT | 1 cut(s) | 422 |
| PmaCI | CACGTG | 1 cut(s) | 1389 |
| PmlI | CACGTG | 1 cut(s) | 1389 |
| Ppu21I | YACGTR | 1 cut(s) | 1389 |
| PshAI | GACNNNNGTC | 1 cut(s) | 458 |
| PsiI | TTATAA | 2 cut(s) | 129, 600 |
| Psp6I | CCWGG | 2 cut(s) | 1447, 1642 |
| PspCI | CACGTG | 1 cut(s) | 1389 |
| PspGI | CCWGG | 2 cut(s) | 1447, 1642 |
| PspN4I | GGNNCC | 3 cut(s) | 1029, 1463, 1464 |
| PspOMI | GGGCCC | 1 cut(s) | 1461 |
| PspPI | GGNCC | 3 cut(s) | 1461, 1462, 1640 |
| PsuI | RGATCY | 1 cut(s) | 1027 |
| PsyI | GACNNNGTC | 2 cut(s) | 137, 608 |
| RsaI | GTAC | 2 cut(s) | 363, 1343 |
| RsaNI | GTAC | 2 cut(s) | 362, 1342 |
| RseI | CAYNNNNRTG | 4 cut(s) | 87, 558, 1119, 1665 |
| SaqAI | TTAA | 8 cut(s) | 294, 336, 765, 807, 1295, 1581, 1595, 1605 |
| Sau3AI | GATC | 4 cut(s) | 277, 748, 1027, 1488 |
| Sau96I | GGNCC | 3 cut(s) | 1461, 1462, 1640 |
| ScrFI | CCNGG | 3 cut(s) | 1322, 1449, 1644 |
| SduI | GDGCHC | 4 cut(s) | 149, 620, 1151, 1465 |
| SfaNI | GCATC | 2 cut(s) | 1069, 1084 |
| SfuI | TTCGAA | 1 cut(s) | 1754 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 87, 558, 1119, 1665 |
| SmlI | CTYRAG | 1 cut(s) | 1594 |
| SmoI | CTYRAG | 1 cut(s) | 1594 |
| SpeI | ACTAGT | 2 cut(s) | 308, 779 |
| Sse9I | AATT | 6 cut(s) | 187, 658, 1014, 1428, 1509, 1610 |
| SsiI | CCGC | 1 cut(s) | 1141 |
| SspI | AATATT | 3 cut(s) | 292, 763, 1039 |
| SspMI | CTAG | 3 cut(s) | 309, 780, 1783 |
| StyD4I | CCNGG | 3 cut(s) | 1320, 1447, 1642 |
| StyI | CCWWGG | 3 cut(s) | 198, 669, 1493 |
| TaaI | ACNGT | 1 cut(s) | 1555 |
| TaiI | ACGT | 3 cut(s) | 172, 643, 1391 |
| TaqI | TCGA | 1 cut(s) | 1754 |
| TasI | AATT | 6 cut(s) | 187, 658, 1014, 1428, 1509, 1610 |
| TatI | WGTACW | 1 cut(s) | 1341 |
| TfiI | GAWTC | 5 cut(s) | 208, 267, 679, 738, 1713 |
| Tru1I | TTAA | 8 cut(s) | 294, 336, 765, 807, 1295, 1581, 1595, 1605 |
| Tru9I | TTAA | 8 cut(s) | 294, 336, 765, 807, 1295, 1581, 1595, 1605 |
| TscAI | CASTG | 2 cut(s) | 965, 1558 |
| TseFI | GTSAC | 3 cut(s) | 115, 586, 1384 |
| Tsp45I | GTSAC | 3 cut(s) | 115, 586, 1384 |
| TspGWI | ACGGA | 2 cut(s) | 1020, 1020 |
| TspRI | CASTG | 2 cut(s) | 965, 1558 |
| Tth111I | GACNNNGTC | 2 cut(s) | 137, 608 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 204, 675 |
| Vha464I | CTTAAG | 1 cut(s) | 1594 |
| XapI | RAATTY | 1 cut(s) | 1428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1325 |
| XmiI | GTMKAC | 1 cut(s) | 1566 |
| XmnI | GAANNNNTTC | 2 cut(s) | 207, 678 |
| XspI | CTAG | 3 cut(s) | 309, 780, 1783 |