FvH4_5g20780

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000028
Physical Location & Seq
Reverse (-)
12344634 .. 12347571
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20780.t1

Sequence Viewer

Length: 2457 bp
ATGTTAATCAGTATCATGAGTGGAGGATCTATGCAATATTCTGTTTTGGTTGGCCTTGTGTGCCTGGCCATTGCCTCCTTTTCTAGTAGTGTTGGAAGCTCCAACAATACTTTCTTGTGCTTGGAGAGTGAAAGGCTTGCTCTTTTACAGTTTAAACAAGGCCTTCTATCCGATTACAAATATAATGCTCTTGCCACTTGGGAAAGCACGAAAGATTGCTGCGACTGGAGAGGAATTGCGTGTAACAATCATACAGGTCATGTCATCACTCTTGATCTCTCTTTTAATTTTCTAAGAGGTGAAATTCATCCTTCACTACTTGAATTGCGATATCTAGAGTACTTGGACCTTAGTTTTAATGATTTTGGAGGTATGATGATTCCCGTCTTCATTGGCTCTTTGAGTCAATTGAAAGAGCTCAAACTTGGAAGAGCTAATTTCAGTGGGCATGTTCCTCCCCAGCTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCAATAACGAAAATGTTAGTTCTGAAAATGTTGAGTGGTTGTCTCATCTCTCTTCCTTGAGATACCTGAACATGTCATGGGTGAATTTGTCTGAGGCTGTGAATTGGCCACAATCTTTGAGCAAGCTCACTTCATTAAGAGAGCTTAAGTTATCTCTGTGTAACCTTCCTGATGTCAATCTAAGCTCACTTTCTAAGAACGCACTGGAGACCTTGGACTTGCAGAATAACCAGTTCTGGGGTTCACTTCCAGAACTGACAGGTTTTTCCAAGTTGAGAGAGTTACTCCTCTCCTCTAATAATATATCCGGGTCTCTACCCGAGAGTGTCGGGACACTCTCTAGCCTTGAAGAACTAGATGTCAGCATGAATTCTATGACGGGTGTCATCACAGAATCCCACCTTCGGGACCTCTCTCGTTTACAGTCTTTGAAACTTTCTGGTAATGGTTTCTACATCAACCTCAGCTCTCATTGGGATCCACCATTTCAACTTACTAGTTCGTTAGCCCTCTCCTCTTGCAAGCTGGGCCCAGCTTTTCCGAAATGGATTCTGAAGCAGACAAATATTACTGAGCTTCATCTCTCTAATGCTGGAATATCAGGATCATTACCTGATAAGTTTTGGGATCTATTTGTCCACTTATATTCGTTAGATCTCTCCATCAATCAAATCTGTGGGAAGCTGCCGAATCTGTCAACAACAATATTTTGGGTTGTTGACTTGTCTTCTAATCTACTTTCCGGTGCAGTGCCATCATTTCCTCCGACGCTTAGGTTCTTGAATCTCTCGACCAACATGTTTTCTGACCTCTCGTCTTCCTTTTGTGCAACGCGGGCTCCATATTTGGGTTTCATTGAAATTTCTGATAACCTATTATCAGGGGAGCTTCCCAATTGTTGGATGCAATTCTCAGGATTGGGATTATTGTTTTTAGGAAAAAATAAATTATCAGGGAAAATACCAAGCTCGTTGGGCAATCTAAAGATTATGACTTTATTGAGTTTAAAAGATAACAACTTCTCAGGAGAATTGCCTTCGTTAGAAAATTGTACTGAACTAGCGATGGTTGACCTTGACAACAATAACTTGTCGGGGAGGATACCAACATGGATTGGCCAACGCCTAACAACTTTGATGTATCTACGCTTACGCTCCAATCAGTTCAGTGGAATCATACCTTCTTCCCTGTGCAATCTAGCCACCATTCATGTTTTGGACCTCTCTCACAACAATATTTCAGGAGGCTTGCCACGTTGCTTGAATAACATAACCGCTATGGCGGTTGATATTGTATTGGGAATGGGTGTAGAACTCGTATGGAAAGGAATAGAGAGAGAGTTTGGGAAAAATCTTCTGCAGGTGAGAAGCATTGACATTTCAAGCAATTCTTTGGTAGACGAAATTCCAGAAAGTATCACAAGTATGGAAAAGTTAACATCACTGAACCTTTCAGGAAACAATTTGATCGGAAAGGTTCCTGAAAACTTTGGAAACATGAAGATGTTGGAATCTCTTGATTTGTCCAGAAACCAGATATCTGGTGGAATACCTGCAAGTTTTTCAAAACTAAACTTTCTTAGTGTCTTGGACTTATCACACAACAACTTGTCAGGAAGAATTCCACTTGGCACCCAACTTCAGAGTTTTAATGCTACTGTATATATGGGAAATTTTGGACTTTGCGGACCACCGTTGACACCAAATTGCTCGGAAAATGGAACAACACAAGCTGATGATGATATGAAAGAAGATGATGATGATGGTCTCATAAGCCTGGGATTTTTTATCAGTACAGTGCTAGGATTTGTCAGTGGATTTTGGATAGTCTGTGGGAGTTTGCTGCTGAAGAGCTCTTGGAGATACGCCTATTTCAAATTCTTAGATGATTCAAGAGATTGGATTCATGTCAAAACGGCTGTGTACAAGGAAAAAATGCAGAGGAGACTTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

819

Amino Acids

90.27

Weight (kDa)

5.48

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 82 3.2e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 107 - 250 2.8e-11 Leucine-rich repeat region
LRR_8 PF13855 257 - 316 7.3e-08 Leucine rich repeat
LRR_8 PF13855 519 - 579 2.4e-07 Leucine rich repeat
LRR_8 PF13855 609 - 655 7.5e-06 Leucine rich repeat
LRR_8 PF13855 660 - 703 1.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1849
Acc36I ACCTGC 2 cut(s) 1849, 2059
AccB1I GGYRCC 1 cut(s) 2129
AccB7I CCANNNNNTGG 1 cut(s) 1398
AccI GTMKAC 1 cut(s) 1896
AccII CGCG 1 cut(s) 1333
AciI CCGC 4 cut(s) 1333, 1773, 1781, 2184
AclWI GGATC 5 cut(s) 34, 971, 984, 1111, 1134
AcoI YGGCCR 3 cut(s) 66, 605, 1615
AcsI RAATTY 8 cut(s) 303, 583, 868, 1359, 1902, 2118, 2170, 2375
AcuI CTGAAG 3 cut(s) 1073, 2123, 2366
AfaI GTAC 4 cut(s) 341, 1552, 2293, 2423
AfiI CCNNNNNNNGG 6 cut(s) 464, 736, 903, 904, 1346, 1398
AflII CTTAAG 1 cut(s) 644
AflIII ACRYGT 2 cut(s) 570, 1296
AhdI GACNNNNNGTC 1 cut(s) 1312
AhlI ACTAGT 1 cut(s) 995
AjnI CCWGG 2 cut(s) 63, 2274
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
Alw21I GWGCWC 2 cut(s) 420, 2354
Alw26I GTCTC 5 cut(s) 546, 701, 816, 2270, 2437
AlwI GGATC 5 cut(s) 34, 971, 984, 1111, 1134
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 6 cut(s) 52, 66, 160, 605, 1027, 1615
ApaI GGGCCC 1 cut(s) 1031
ApeKI GCWGC 3 cut(s) 219, 1183, 2341
ApoI RAATTY 8 cut(s) 303, 583, 868, 1359, 1902, 2118, 2170, 2375
AspS9I GGNCC 6 cut(s) 346, 907, 1027, 1028, 1717, 2186
AsuC2I CCSGG 1 cut(s) 808
AsuHPI GGTGA 3 cut(s) 311, 592, 1873
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 4 cut(s) 346, 907, 1717, 2186
BaeGI GKGCMC 1 cut(s) 1031
BalI TGGCCA 3 cut(s) 68, 607, 1617
BamHI GGATCC 1 cut(s) 976
BanI GGYRCC 1 cut(s) 2129
BanII GRGCYC 4 cut(s) 420, 1031, 1339, 2354
BbsI GAAGAC 3 cut(s) 379, 1218, 1308
Bbv12I GWGCWC 2 cut(s) 420, 2354
BbvCI CCTCAGC 1 cut(s) 962
BbvI GCAGC 3 cut(s) 206, 1170, 2328
BccI CCATC 4 cut(s) 1169, 1261, 1558, 2255
BceAI ACGGC 1 cut(s) 2430
BciT130I CCWGG 2 cut(s) 65, 2276
BciVI GTATCC 1 cut(s) 1593
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 5 cut(s) 546, 701, 816, 2270, 2437
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 8 cut(s) 84, 335, 840, 854, 996, 1559, 1697, 2300
BfmI CTRYAG 1 cut(s) 1856
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 2 cut(s) 1849, 2059
BfuI GTATCC 1 cut(s) 1593
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 3 cut(s) 220, 1184, 2342
BlsI GCNGC 3 cut(s) 221, 1185, 2343
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 65, 808, 2276
Bme18I GGWCC 4 cut(s) 346, 907, 1717, 2186
BmeRI GACNNNNNGTC 1 cut(s) 1312
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 6 cut(s) 346, 907, 1027, 1028, 1717, 2186
BmiI GGNNCC 6 cut(s) 908, 978, 1029, 1338, 1977, 2131
BmrFI CCNGG 3 cut(s) 65, 808, 2276
BmsI GCATC 1 cut(s) 1392
BoxI GACNNNNGTC 1 cut(s) 881
BpiI GAAGAC 3 cut(s) 379, 1218, 1308
BplI GAGNNNNNCTC 2 cut(s) 768, 800
BpmI CTGGAG 2 cut(s) 247, 725
Bpu10I CCTNAGC 2 cut(s) 962, 1271
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 1 cut(s) 808
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 3 cut(s) 701, 816, 2270
BsaJI CCNNGG 2 cut(s) 711, 2275
BsaWI WCCGGW 1 cut(s) 1241
BsaXI ACNNNNNCTCC 2 cut(s) 1321, 1351
Bsc4I CCNNNNNNNGG 6 cut(s) 464, 736, 903, 904, 1346, 1398
Bse1I ACTGG 3 cut(s) 230, 708, 730
Bse3DI GCAATG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 2 cut(s) 65, 2276
BseDI CCNNGG 2 cut(s) 711, 2275
BseGI GGATG 2 cut(s) 307, 1407
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 6 cut(s) 464, 736, 903, 904, 1346, 1398
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 5 cut(s) 582, 976, 1062, 1425, 1536
BseNI ACTGG 3 cut(s) 230, 708, 730
BseRI GAGGAG 4 cut(s) 776, 781, 1003, 2455
BseSI GKGCMC 1 cut(s) 1031
BseXI GCAGC 3 cut(s) 206, 1170, 2328
BseYI CCCAGC 3 cut(s) 459, 1024, 1030
BsgI GTGCAG 1 cut(s) 1266
Bsh1236I CGCG 1 cut(s) 1333
BshFI GGCC 6 cut(s) 54, 68, 162, 607, 1029, 1617
BshNI GGYRCC 1 cut(s) 2129
BsiHKAI GWGCWC 2 cut(s) 420, 2354
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 2 cut(s) 807, 1242
BslFI GGGAC 2 cut(s) 844, 920
BslI CCNNNNNNNGG 6 cut(s) 464, 736, 903, 904, 1346, 1398
BsmAI GTCTC 5 cut(s) 546, 701, 816, 2270, 2437
BsmFI GGGAC 2 cut(s) 844, 920
BsnI GGCC 6 cut(s) 54, 68, 162, 607, 1029, 1617
Bso31I GGTCTC 3 cut(s) 701, 816, 2270
BsoBI CYCGRG 1 cut(s) 818
Bsp120I GGGCCC 1 cut(s) 1027
Bsp1286I GDGCHC 4 cut(s) 420, 1031, 1339, 2354
Bsp1407I TGTACA 1 cut(s) 2421
Bsp143I GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
BspACI CCGC 4 cut(s) 1333, 1773, 1781, 2184
BspANI GGCC 6 cut(s) 54, 68, 162, 607, 1029, 1617
BspCNI CTCAG 5 cut(s) 583, 975, 1063, 1424, 1535
BspFNI CGCG 1 cut(s) 1333
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 6 cut(s) 908, 978, 1029, 1338, 1977, 2131
BspMAI CTGCAG 1 cut(s) 1860
BspMI ACCTGC 2 cut(s) 1849, 2059
BspPI GGATC 5 cut(s) 34, 971, 984, 1111, 1134
BspQI GCTCTTC 2 cut(s) 424, 2342
BspT107I GGYRCC 1 cut(s) 2129
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 3 cut(s) 701, 816, 2270
BsrDI GCAATG 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 2421
BsrI ACTGG 3 cut(s) 230, 708, 730
BssECI CCNNGG 2 cut(s) 711, 2275
BssMI GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 65, 2276
Bst4CI ACNGT 5 cut(s) 150, 924, 2158, 2193, 2296
Bst6I CTCTTC 3 cut(s) 424, 556, 2342
BstAFI CTTAAG 1 cut(s) 644
BstAUI TGTACA 1 cut(s) 2421
BstC8I GCNNGC 5 cut(s) 138, 623, 1022, 1335, 1748
BstF5I GGATG 2 cut(s) 307, 1407
BstFNI CGCG 1 cut(s) 1333
BstKTI GATC 8 cut(s) 29, 277, 496, 979, 1106, 1129, 1156, 1968
BstMAI GTCTC 5 cut(s) 546, 701, 816, 2270, 2437
BstMBI GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
BstMWI GCNNNNNNNGC 4 cut(s) 60, 1026, 1334, 1473
BstNI CCWGG 2 cut(s) 65, 2276
BstNSI RCATGY 3 cut(s) 452, 574, 1300
BstPAI GACNNNNGTC 1 cut(s) 881
BstSCI CCNGG 3 cut(s) 63, 806, 2274
BstSFI CTRYAG 1 cut(s) 1856
BstSLI GKGCMC 1 cut(s) 1031
BstUI CGCG 1 cut(s) 1333
BstV1I GCAGC 3 cut(s) 206, 1170, 2328
BstV2I GAAGAC 3 cut(s) 379, 1218, 1308
BstX2I RGATCY 4 cut(s) 26, 976, 1126, 1153
BstXI CCANNNNNNTGG 1 cut(s) 2039
BstYI RGATCY 4 cut(s) 26, 976, 1126, 1153
BsuI GTATCC 1 cut(s) 1593
BsuRI GGCC 6 cut(s) 54, 68, 162, 607, 1029, 1617
BtgZI GCGATG 1 cut(s) 1577
BtsCI GGATG 2 cut(s) 307, 1407
BtsI GCAGTG 1 cut(s) 1254
BtsIMutI CAGTG 7 cut(s) 448, 701, 1254, 1672, 1940, 2301, 2317
BveI ACCTGC 2 cut(s) 1849, 2059
Cac8I GCNNGC 5 cut(s) 138, 623, 1022, 1335, 1748
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 6 cut(s) 346, 907, 1027, 1028, 1717, 2186
CseI GACGC 1 cut(s) 1276
Csp6I GTAC 4 cut(s) 340, 1551, 2292, 2422
CspCI CAANNNNNGTGG 4 cut(s) 597, 632, 1740, 1775
CviQI GTAC 4 cut(s) 340, 1551, 2292, 2422
DpnI GATC 8 cut(s) 28, 276, 495, 978, 1105, 1128, 1155, 1967
DpnII GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
DraI TTTAAA 2 cut(s) 154, 1506
DriI GACNNNNNGTC 1 cut(s) 1312
EaeI YGGCCR 3 cut(s) 66, 605, 1615
Eam1104I CTCTTC 3 cut(s) 424, 556, 2342
Eam1105I GACNNNNNGTC 1 cut(s) 1312
EarI CTCTTC 3 cut(s) 424, 556, 2342
Ecl136II GAGCTC 2 cut(s) 418, 2352
Eco130I CCWWGG 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 4 cut(s) 420, 1031, 1339, 2354
Eco31I GGTCTC 3 cut(s) 701, 816, 2270
Eco32I GATATC 2 cut(s) 332, 2037
Eco47I GGWCC 4 cut(s) 346, 907, 1717, 2186
Eco53kI GAGCTC 2 cut(s) 418, 2352
Eco57I CTGAAG 3 cut(s) 1073, 2123, 2366
Eco88I CYCGRG 1 cut(s) 818
EcoICRI GAGCTC 2 cut(s) 418, 2352
EcoO109I RGGNCCY 1 cut(s) 907
EcoRI GAATTC 2 cut(s) 868, 2118
EcoRII CCWGG 2 cut(s) 63, 2274
EcoRV GATATC 2 cut(s) 332, 2037
EcoT14I CCWWGG 1 cut(s) 711
EcoT38I GRGCYC 4 cut(s) 420, 1031, 1339, 2354
ErhI CCWWGG 1 cut(s) 711
FalI AAGNNNNNCTT 2 cut(s) 1873, 1905
FaqI GGGAC 2 cut(s) 844, 920
FauI CCCGC 1 cut(s) 1326
FblI GTMKAC 1 cut(s) 1896
Fnu4HI GCNGC 3 cut(s) 220, 1184, 2342
FokI GGATG 2 cut(s) 294, 1414
FriOI GRGCYC 4 cut(s) 420, 1031, 1339, 2354
Fsp4HI GCNGC 3 cut(s) 220, 1184, 2342
FspBI CTAG 8 cut(s) 84, 335, 840, 854, 996, 1559, 1697, 2300
GluI GCNGC 3 cut(s) 220, 1184, 2342
GsaI CCCAGC 3 cut(s) 463, 1028, 1034
GsuI CTGGAG 2 cut(s) 247, 725
HaeIII GGCC 6 cut(s) 54, 68, 162, 607, 1029, 1617
HapII CCGG 2 cut(s) 807, 1242
HgaI GACGC 1 cut(s) 1276
HincII GTYRAC 5 cut(s) 1197, 1219, 1570, 1935, 2196
HindII GTYRAC 5 cut(s) 1197, 1219, 1570, 1935, 2196
HpaI GTTAAC 1 cut(s) 1935
HpaII CCGG 2 cut(s) 807, 1242
HphI GGTGA 3 cut(s) 311, 592, 1873
Hpy99I CGWCG 1 cut(s) 1270
HpyAV CCTTC 6 cut(s) 173, 321, 674, 911, 1545, 1689
HpyCH4III ACNGT 5 cut(s) 150, 924, 2158, 2193, 2296
HpyCH4IV ACGT 1 cut(s) 1753
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 1026, 1334, 1473
HpySE526I ACGT 1 cut(s) 1753
KspAI GTTAAC 1 cut(s) 1935
Kzo9I GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
LguI GCTCTTC 2 cut(s) 424, 2342
LmnI GCTCC 4 cut(s) 104, 1342, 1384, 1658
Lsp1109I GCAGC 3 cut(s) 206, 1170, 2328
LweI GCATC 1 cut(s) 1392
MaeI CTAG 8 cut(s) 84, 335, 840, 854, 996, 1559, 1697, 2300
MaeII ACGT 1 cut(s) 1753
MaeIII GTNAC 3 cut(s) 242, 659, 780
MalI GATC 8 cut(s) 28, 276, 495, 978, 1105, 1128, 1155, 1967
MboI GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
MfeI CAATTG 2 cut(s) 407, 1393
MflI RGATCY 4 cut(s) 26, 976, 1126, 1153
MhlI GDGCHC 4 cut(s) 420, 1031, 1339, 2354
MlsI TGGCCA 3 cut(s) 68, 607, 1617
MluNI TGGCCA 3 cut(s) 68, 607, 1617
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 5 cut(s) 73, 126, 1289, 1379, 1986
Mox20I TGGCCA 3 cut(s) 68, 607, 1617
MscI TGGCCA 3 cut(s) 68, 607, 1617
MseI TTAA 9 cut(s) 5, 153, 285, 357, 635, 645, 1505, 1934, 2148
MslI CAYNNNNRTG 2 cut(s) 1922, 2000
Msp20I TGGCCA 3 cut(s) 68, 607, 1617
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 2 cut(s) 807, 1242
MspR9I CCNGG 3 cut(s) 65, 808, 2276
MssI GTTTAAAC 1 cut(s) 154
MunI CAATTG 2 cut(s) 407, 1393
MvaI CCWGG 2 cut(s) 65, 2276
MvnI CGCG 1 cut(s) 1333
MwoI GCNNNNNNNGC 4 cut(s) 60, 1026, 1334, 1473
NciI CCSGG 1 cut(s) 808
NdeII GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
NlaIV GGNNCC 6 cut(s) 908, 978, 1029, 1338, 1977, 2131
NspI RCATGY 3 cut(s) 452, 574, 1300
PagI TCATGA 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 1849
PceI AGGCCT 1 cut(s) 162
PciI ACATGT 2 cut(s) 570, 1296
PciSI GCTCTTC 2 cut(s) 424, 2342
PfeI GAWTC 9 cut(s) 379, 893, 1048, 1189, 1282, 1671, 2009, 2387, 2401
PflMI CCANNNNNTGG 1 cut(s) 1398
PkrI GCNGC 3 cut(s) 221, 1185, 2343
PleI GAGTC 1 cut(s) 411
PmeI GTTTAAAC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 411
PpuMI RGGWCCY 1 cut(s) 907
PscI ACATGT 2 cut(s) 570, 1296
PshAI GACNNNNGTC 1 cut(s) 881
Psp124BI GAGCTC 2 cut(s) 420, 2354
Psp5II RGGWCCY 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 63, 2274
PspFI CCCAGC 3 cut(s) 459, 1024, 1030
PspGI CCWGG 2 cut(s) 63, 2274
PspN4I GGNNCC 6 cut(s) 908, 978, 1029, 1338, 1977, 2131
PspOMI GGGCCC 1 cut(s) 1027
PspPI GGNCC 6 cut(s) 346, 907, 1027, 1028, 1717, 2186
PspPPI RGGWCCY 1 cut(s) 907
PstI CTGCAG 1 cut(s) 1860
PsuI RGATCY 4 cut(s) 26, 976, 1126, 1153
RsaI GTAC 4 cut(s) 341, 1552, 2293, 2423
RsaNI GTAC 4 cut(s) 340, 1551, 2292, 2422
RseI CAYNNNNRTG 2 cut(s) 1922, 2000
SacI GAGCTC 2 cut(s) 420, 2354
SapI GCTCTTC 2 cut(s) 424, 2342
SaqAI TTAA 9 cut(s) 5, 153, 285, 357, 635, 645, 1505, 1934, 2148
SatI GCNGC 3 cut(s) 220, 1184, 2342
Sau3AI GATC 8 cut(s) 26, 274, 493, 976, 1103, 1126, 1153, 1965
Sau96I GGNCC 6 cut(s) 346, 907, 1027, 1028, 1717, 2186
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 3 cut(s) 65, 808, 2276
SduI GDGCHC 4 cut(s) 420, 1031, 1339, 2354
SfaNI GCATC 1 cut(s) 1392
SfcI CTRYAG 1 cut(s) 1856
SinI GGWCC 4 cut(s) 346, 907, 1717, 2186
SmiMI CAYNNNNRTG 2 cut(s) 1922, 2000
SmlI CTYRAG 2 cut(s) 556, 644
SmoI CTYRAG 2 cut(s) 556, 644
SpeI ACTAGT 1 cut(s) 995
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 4 cut(s) 1333, 1773, 1781, 2184
SspI AATATT 4 cut(s) 38, 1066, 1206, 1735
SspMI CTAG 8 cut(s) 84, 335, 840, 854, 996, 1559, 1697, 2300
SstI GAGCTC 2 cut(s) 420, 2354
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 63, 806, 2274
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 5 cut(s) 150, 924, 2158, 2193, 2296
TaiI ACGT 1 cut(s) 1756
TaqI TCGA 1 cut(s) 1289
TatI WGTACW 4 cut(s) 339, 1550, 2291, 2421
TfiI GAWTC 9 cut(s) 379, 893, 1048, 1189, 1282, 1671, 2009, 2387, 2401
Tru1I TTAA 9 cut(s) 5, 153, 285, 357, 635, 645, 1505, 1934, 2148
Tru9I TTAA 9 cut(s) 5, 153, 285, 357, 635, 645, 1505, 1934, 2148
TscAI CASTG 7 cut(s) 448, 708, 1254, 1672, 1947, 2301, 2317
TseI GCWGC 3 cut(s) 219, 1183, 2341
TspRI CASTG 7 cut(s) 448, 708, 1254, 1672, 1947, 2301, 2317
Van91I CCANNNNNTGG 1 cut(s) 1398
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 4 cut(s) 346, 907, 1717, 2186
XapI RAATTY 8 cut(s) 303, 583, 868, 1359, 1902, 2118, 2170, 2375
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 3 cut(s) 452, 574, 1300
XcmI CCANNNNNNNNNTGG 2 cut(s) 1711, 2039
XmiI GTMKAC 1 cut(s) 1896
XspI CTAG 8 cut(s) 84, 335, 840, 854, 996, 1559, 1697, 2300
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.