RchiOBHm_Chr7g0207201

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000028
Physical Location & Seq
Reverse (-)
24623284 .. 24626346
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18543

Sequence Viewer

Length: 3063 bp
ATGCTTCCACTCTGCAGTTTGCATATCATCTTCGTAATCATGTTTTACAGTATAATGAGTGGTAGATCTGTGCATTCTGTTTTGGTTGGGCTTGTGTGCCTGGCCCTTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTCCAACAACATTATGTGCTTGGAGAGTGAAAGACATGCTCTTCTCCAGTTCAAACAAGGGCTTGTGGATGAGTCCAATGCTCTTGCTTCTTGGGAAAACAAGAAAGATTGCTGCAAGTGGAGAGGAATAGCGTGCAACAACCAAACAGGTCATGTCACAAGACTTGATTTGCCCTTTATATCTTTCAATTATACTGAAGTTCCTTTAAGAGGTGAAATTAGTCATTCACTACTTGAATTGCCATATCTAAATTACTTGGACCTCAGTTATAATGATTTTGGAGGAATGATCATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGCTGCTGATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCATACTCTTGATCTTTCCTTCAATGATTTTGAAGGAATGATGGTTCCCAAATTCATTGGCTTTTTGAGTCAATTGAAGGAACTCAAACTTGCAACTGCTGATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTCGATCTTTCCGGGAACCATGATGCTAGTTCTGAAAACCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACCTGAACATGGCATGGCTGAATTTGTCTGAGGCTGTGAATTGGCCACAATCTTTAAGCAAGCTCACTTTACTGACAGAGCTTCAGTTATCCCAGTGTAACCTTCCTGATGTCAATCTAAGATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCAACTCCTTGACCTCTCTTGGAACTCTCTTAATTCTTCAATATTTTATTGGATAGCCAATGTCAGTAGCAACTTTGTCCATATTGATCTCTCTTTCAACAATCTCGAAAGTCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTATATCTGTCTTCGAATCAACTTGAAGGTCTCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTAGATCTGTCACGGAATCAACTTGAAGGTGGGATACCAAAAAGCTTTCAAAACTTATGCAGCTTAGAGTCGTTGACCTTATGGTCAAACCAATTGTCTGAAAACATTGAGGACTCTGTTAAAACCTTGTCTTGTGCTGAGAACACACTTGAGACCTTGCACTTGGGTTTGAACCAACTTTGGGGGTCCTGGCCAGATTTGAAACGTTTTTCAAAGTTAAGAGAGTTAGATCTTTCCATTAATCAACTAAATGGCTCTGTACCCGAGAGTGTCGGGCAACTCTCTAGCCTTGAATTTTTATCTCTCAGGGGTAATTCTTTCACTGGTGTCATAACAGAATCCCACTTTCTGAACCTCTCTCGTTTACAGATTTTGGAGCTTTCTGGTAATCGTTTCTCTATCAACCTGAGCTCTGATTGGAATCCACCATTTCAACTTGGTTTGTTAGGCATGTCCTCTTGCAAGGTGGGCCCAGCTTTTCCCAAGTGGATTCTAACGCAGACAAATCTTACTCTGCTTTATCTCTCTAATGCTGGACTATCAGGATCATTACCTAATAAGTTTTGGGATCTATTTTCCGGCTTATCTGATTTAGATCTCTCTATGAACCAAATCCATGGAAAACTGCCGAATCTGTCATTGACAAGCTTGAGTTATGTTAACTTGTCTTCTAATCTATTTTCTGGCGCAGTGCCATCATTTTCTCCTATGCTAGGAGAGATGTATCTCTCGAATAATAGGTTTTCAGGACCTTTGTCTTCCTTATGTGCAACGCAGTCTCCAAATTTAAGGTCTGCTGACATTTCTGAGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAGAATTGCAAGTGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTCGTTAGGCAATCTACAGGGAATTGTGATATTGCGTTTACATGATAACAACTTTTCAGGTGAATTGCCTTCTTTAGAGAACTGTACCAGATTATCGATAGTTGACCTTGGCAACAATAACTTGTCGGGAAAGATACCAACATGGATTGGCCAAAGCCTACCAAAGTTGGTGATTCTACGCTTACAGTCTAATGAGTTCAATGGAATCATACCCTTGTCCTTGTGCACTCTAGCTGCCATTCATGTATTGGACCTCTCTCACAACAACATTTCCGGAGGCTTGCCGCATTGCTTCAATAACATCAGCCAAAGCGCTAATAATCATCATATCCATTATCCTTCTTTCACTAATGTGTTAGTTAATTCAGAACTCATGTGGAAGGGAATAGAAAGAGAGTTTGGGAAAAATCTTGCTGGTATGAGAAGCATTGACATGTCAAGCAACTGTTTGATGGGGGAAATTCCTCAAAGTATAGCAAATATGACAGAGTTGAAATCACTGAATCTGTCAAGAAACTATTTGACAGGAAAGCTTCCCGAAAACTTTGGTAACATGAAGATGTTGGAATCTCTTGATTTGTCAAGAAACCAGATATCTGGTAAAATTCCTACAAGTCTTGCAAGCTTAAACTTTCTTAGTGTCTTGGACTTATCACACAACAACTTGTCAGGAAGAATTCCGTCAGGCACCCAACTTCAGGGTTTTAATGCTTCTGCATATATGGGAAATCTTGGACTTTGTGGACCACCGCTGACACCAAATTGCCCACCAGATGGAGCAACTCAAGCTGATGATAACAAAGAACATGATAATGATGGTCTCATAAGCCTGGGATTTTTTATCAGTGCTGTGCTAGGATTCGTCATTGGATTTTGGATGGTCTGCGGCAGTCTACTGCTTAAGACTTCTTGGAGATATGCTTATTTCATATTCCTGGACAATGCAAAAGATTGGATTTATGTCAAAACCGCTGTGTACAAGGCAAAAGTGCAAAGGAGACTTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1020

Amino Acids

112.45

Weight (kDa)

5.72

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 55 - 93 1.5e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 122 - 366 8.1e-19 Leucine-rich repeat region
LRR_8 PF13855 333 - 389 2e-09 Leucine rich repeat
LRR_8 PF13855 354 - 413 2.1e-10 Leucine rich repeat
LRR_8 PF13855 714 - 774 8.2e-06 Leucine rich repeat
LRR_14 PF23598 840 - 904 4.3e-06 Leucine-rich repeat region
LRR_8 PF13855 847 - 906 7.1e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AasI GACNNNNNNGTC 1 cut(s) 1225
AccB1I GGYRCC 1 cut(s) 2738
AccB7I CCANNNNNTGG 1 cut(s) 2825
AccI GTMKAC 1 cut(s) 2944
AccIII TCCGGA 1 cut(s) 2324
AciI CCGC 4 cut(s) 2336, 2801, 2937, 3021
AclI AACGTT 1 cut(s) 1348
AclWI GGATC 2 cut(s) 1696, 1719
AcoI YGGCCR 3 cut(s) 806, 1334, 2200
AcsI RAATTY 8 cut(s) 587, 784, 1436, 1927, 2014, 2511, 2655, 2727
AcuI CTGAAG 3 cut(s) 357, 830, 2732
AfaI GTAC 3 cut(s) 1404, 2137, 3029
AfeI AGCGCT 1 cut(s) 2365
AfiI CCNNNNNNNGG 8 cut(s) 350, 518, 665, 772, 1324, 1856, 2749, 2825
AflII CTTAAG 1 cut(s) 2951
AflIII ACRYGT 1 cut(s) 2484
AjnI CCWGG 4 cut(s) 99, 1331, 2880, 2985
AjuI GAANNNNNNNTTGG 2 cut(s) 2433, 2465
AleI CACNNNNGTG 1 cut(s) 2402
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
Alw21I GWGCWC 2 cut(s) 1556, 2279
Alw26I GTCTC 5 cut(s) 1106, 1289, 1926, 2876, 3043
Alw44I GTGCAC 1 cut(s) 2275
AlwI GGATC 2 cut(s) 1696, 1719
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 1406
Aor13HI TCCGGA 1 cut(s) 2324
Aor51HI AGCGCT 1 cut(s) 2365
AoxI GGCC 5 cut(s) 102, 806, 1334, 1612, 2200
ApaI GGGCCC 1 cut(s) 1616
ApaLI GTGCAC 1 cut(s) 2275
ApeKI GCWGC 5 cut(s) 252, 482, 485, 1203, 2285
ApoI RAATTY 8 cut(s) 587, 784, 1436, 1927, 2014, 2511, 2655, 2727
ArsI GACNNNNNNTTYG 4 cut(s) 1223, 1255, 1919, 1951
AseI ATTAAT 2 cut(s) 900, 1383
AspLEI GCGC 2 cut(s) 1832, 2366
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 365, 2123, 2233
AsuII TTCGAA 1 cut(s) 1085
AvaI CYCGRG 1 cut(s) 1406
AvaII GGWCC 7 cut(s) 400, 500, 647, 1329, 1892, 2302, 2795
BaeGI GKGCMC 2 cut(s) 1616, 2279
BalI TGGCCA 3 cut(s) 808, 1336, 2202
BanI GGYRCC 1 cut(s) 2738
BanII GRGCYC 2 cut(s) 1556, 1616
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BbsI GAAGAC 5 cut(s) 1036, 1074, 1108, 1803, 1893
Bbv12I GWGCWC 2 cut(s) 1556, 2279
BbvI GCAGC 5 cut(s) 239, 472, 494, 1215, 2272
BccI CCATC 7 cut(s) 571, 1040, 1846, 2497, 2819, 2861, 2923
BciT130I CCWGG 4 cut(s) 101, 1333, 2882, 2987
BciVI GTATCC 1 cut(s) 1170
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 5 cut(s) 1106, 1289, 1926, 2876, 3043
BfaI CTAG 8 cut(s) 717, 1064, 1136, 1145, 1428, 1856, 2282, 2906
BfmI CTRYAG 2 cut(s) 13, 2066
BfoI RGCGCY 1 cut(s) 2367
BfrI CTTAAG 1 cut(s) 2951
BfuI GTATCC 1 cut(s) 1170
BglII AGATCT 4 cut(s) 65, 1147, 1372, 1738
BisI GCNGC 7 cut(s) 253, 483, 486, 1204, 2286, 2336, 2938
BlsI GCNGC 7 cut(s) 254, 484, 487, 1205, 2287, 2337, 2939
Bme1390I CCNGG 5 cut(s) 101, 703, 1333, 2882, 2987
Bme18I GGWCC 7 cut(s) 400, 500, 647, 1329, 1892, 2302, 2795
BmeT110I CYCGRG 1 cut(s) 1406
BmiI GGNNCC 5 cut(s) 582, 707, 1330, 1614, 2740
BmrFI CCNGG 5 cut(s) 101, 703, 1333, 2882, 2987
BmrI ACTGGG 1 cut(s) 850
BmsI GCATC 2 cut(s) 703, 1977
BmuI ACTGGG 1 cut(s) 850
BoxI GACNNNNGTC 1 cut(s) 1897
BpiI GAAGAC 5 cut(s) 1036, 1074, 1108, 1803, 1893
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 1550
Bpu14I TTCGAA 1 cut(s) 1085
BpuEI CTTGAG 5 cut(s) 752, 778, 1313, 1813, 2820
BpuMI CCSGG 1 cut(s) 703
Bsa29I ATCGAT 1 cut(s) 2147
BsaBI GATNNNNATC 3 cut(s) 876, 1563, 1737
BsaI GGTCTC 3 cut(s) 1106, 1289, 2876
BsaJI CCNNGG 3 cut(s) 1759, 2158, 2881
BsaWI WCCGGW 1 cut(s) 2324
BsaXI ACNNNNNCTCC 2 cut(s) 1906, 1936
Bsc4I CCNNNNNNNGG 8 cut(s) 350, 518, 665, 772, 1324, 1856, 2749, 2825
Bse1I ACTGG 3 cut(s) 187, 856, 1471
Bse3DI GCAATG 1 cut(s) 2338
Bse8I GATNNNNATC 3 cut(s) 876, 1563, 1737
BseAI TCCGGA 1 cut(s) 2324
BseBI CCWGG 4 cut(s) 101, 1333, 2882, 2987
BseCI ATCGAT 1 cut(s) 2147
BseDI CCNNGG 3 cut(s) 1759, 2158, 2881
BseGI GGATG 5 cut(s) 214, 1032, 1104, 1992, 2934
BseJI GATNNNNATC 3 cut(s) 876, 1563, 1737
BseLI CCNNNNNNNGG 8 cut(s) 350, 518, 665, 772, 1324, 1856, 2749, 2825
BseMI GCAATG 1 cut(s) 2338
BseMII CTCAG 6 cut(s) 418, 783, 1272, 1462, 1541, 1941
BseNI ACTGG 3 cut(s) 187, 856, 1471
BseSI GKGCMC 2 cut(s) 1616, 2279
BseXI GCAGC 5 cut(s) 239, 472, 494, 1215, 2272
BseYI CCCAGC 1 cut(s) 1615
BshFI GGCC 5 cut(s) 104, 808, 1336, 1614, 2202
BshNI GGYRCC 1 cut(s) 2738
BshVI ATCGAT 1 cut(s) 2147
BsiHKAI GWGCWC 2 cut(s) 1556, 2279
BsiHKCI CYCGRG 1 cut(s) 1406
BsiSI CCGG 3 cut(s) 702, 1722, 2325
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 8 cut(s) 350, 518, 665, 772, 1324, 1856, 2749, 2825
BsmAI GTCTC 5 cut(s) 1106, 1289, 1926, 2876, 3043
BsmFI GGGAC 1 cut(s) 1014
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 5 cut(s) 104, 808, 1336, 1614, 2202
Bso31I GGTCTC 3 cut(s) 1106, 1289, 2876
BsoBI CYCGRG 1 cut(s) 1406
Bsp119I TTCGAA 1 cut(s) 1085
Bsp120I GGGCCC 1 cut(s) 1612
Bsp1286I GDGCHC 3 cut(s) 1556, 1616, 2279
Bsp13I TCCGGA 1 cut(s) 2324
Bsp1407I TGTACA 1 cut(s) 3027
Bsp19I CCATGG 1 cut(s) 1759
BspACI CCGC 4 cut(s) 2336, 2801, 2937, 3021
BspANI GGCC 5 cut(s) 104, 808, 1336, 1614, 2202
BspCNI CTCAG 6 cut(s) 417, 784, 1273, 1461, 1542, 1942
BspDI ATCGAT 1 cut(s) 2147
BspEI TCCGGA 1 cut(s) 2324
BspLI GGNNCC 5 cut(s) 582, 707, 1330, 1614, 2740
BspMAI CTGCAG 1 cut(s) 17
BspPI GGATC 2 cut(s) 1696, 1719
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 1085
BspT107I GGYRCC 1 cut(s) 2738
BspTI CTTAAG 1 cut(s) 2951
BspTNI GGTCTC 3 cut(s) 1106, 1289, 2876
BsrDI GCAATG 1 cut(s) 2338
BsrGI TGTACA 1 cut(s) 3027
BsrI ACTGG 3 cut(s) 187, 856, 1471
BssECI CCNNGG 3 cut(s) 1759, 2158, 2881
BssT1I CCWWGG 2 cut(s) 1759, 2158
Bst2UI CCWGG 4 cut(s) 101, 1333, 2882, 2987
Bst4CI ACNGT 4 cut(s) 50, 2135, 2238, 2498
Bst6I CTCTTC 2 cut(s) 186, 921
BstAFI CTTAAG 1 cut(s) 2951
BstAUI TGTACA 1 cut(s) 3027
BstBI TTCGAA 1 cut(s) 1085
BstC8I GCNNGC 6 cut(s) 274, 824, 1055, 1127, 2333, 2674
BstDEI CTNAG 9 cut(s) 404, 792, 881, 1207, 1281, 1448, 1550, 1950, 2687
BstDSI CCRYGG 1 cut(s) 1759
BstENI CCTNNNNNAGG 2 cut(s) 348, 1854
BstF5I GGATG 5 cut(s) 214, 1032, 1104, 1992, 2934
BstH2I RGCGCY 1 cut(s) 2367
BstHHI GCGC 2 cut(s) 1832, 2366
BstMAI GTCTC 5 cut(s) 1106, 1289, 1926, 2876, 3043
BstMWI GCNNNNNNNGC 3 cut(s) 1611, 2058, 2837
BstNI CCWGG 4 cut(s) 101, 1333, 2882, 2987
BstNSI RCATGY 5 cut(s) 179, 1057, 1129, 1597, 2488
BstPAI GACNNNNGTC 1 cut(s) 1897
BstSCI CCNGG 5 cut(s) 99, 701, 1331, 2880, 2985
BstSFI CTRYAG 2 cut(s) 13, 2066
BstSLI GKGCMC 2 cut(s) 1616, 2279
BstV1I GCAGC 5 cut(s) 239, 472, 494, 1215, 2272
BstV2I GAAGAC 5 cut(s) 1036, 1074, 1108, 1803, 1893
BstX2I RGATCY 5 cut(s) 65, 1147, 1372, 1711, 1738
BstXI CCANNNNNNTGG 2 cut(s) 1760, 2648
BstYI RGATCY 5 cut(s) 65, 1147, 1372, 1711, 1738
Bsu15I ATCGAT 1 cut(s) 2147
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 5 cut(s) 104, 808, 1336, 1614, 2202
BsuTUI ATCGAT 1 cut(s) 2147
BtgI CCRYGG 1 cut(s) 1759
BtsCI GGATG 5 cut(s) 214, 1032, 1104, 1992, 2934
BtsI GCAGTG 1 cut(s) 1839
BtsIMutI CAGTG 7 cut(s) 502, 649, 863, 1464, 1839, 2549, 2902
Cac8I GCNNGC 6 cut(s) 274, 824, 1055, 1127, 2333, 2674
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 1832, 2366
ClaI ATCGAT 1 cut(s) 2147
Csp6I GTAC 3 cut(s) 1403, 2136, 3028
CviQI GTAC 3 cut(s) 1403, 2136, 3028
DdeI CTNAG 9 cut(s) 404, 792, 881, 1207, 1281, 1448, 1550, 1950, 2687
DrdI GACNNNNNNGTC 1 cut(s) 1225
DseDI GACNNNNNNGTC 1 cut(s) 1225
EaeI YGGCCR 3 cut(s) 806, 1334, 2200
Eam1104I CTCTTC 2 cut(s) 186, 921
EarI CTCTTC 2 cut(s) 186, 921
Ecl136II GAGCTC 1 cut(s) 1554
Eco130I CCWWGG 2 cut(s) 1759, 2158
Eco24I GRGCYC 2 cut(s) 1556, 1616
Eco31I GGTCTC 3 cut(s) 1106, 1289, 2876
Eco32I GATATC 1 cut(s) 2646
Eco47I GGWCC 7 cut(s) 400, 500, 647, 1329, 1892, 2302, 2795
Eco47III AGCGCT 1 cut(s) 2365
Eco53kI GAGCTC 1 cut(s) 1554
Eco57I CTGAAG 3 cut(s) 357, 830, 2732
Eco88I CYCGRG 1 cut(s) 1406
EcoICRI GAGCTC 1 cut(s) 1554
EcoNI CCTNNNNNAGG 2 cut(s) 348, 1854
EcoO109I RGGNCCY 2 cut(s) 1329, 1892
EcoRI GAATTC 1 cut(s) 2727
EcoRII CCWGG 4 cut(s) 99, 1331, 2880, 2985
EcoRV GATATC 1 cut(s) 2646
EcoT14I CCWWGG 2 cut(s) 1759, 2158
EcoT38I GRGCYC 2 cut(s) 1556, 1616
ErhI CCWWGG 2 cut(s) 1759, 2158
FaqI GGGAC 1 cut(s) 1014
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 1 cut(s) 2944
Fnu4HI GCNGC 7 cut(s) 253, 483, 486, 1204, 2286, 2336, 2938
FokI GGATG 5 cut(s) 221, 1019, 1091, 1999, 2941
FriOI GRGCYC 2 cut(s) 1556, 1616
Fsp4HI GCNGC 7 cut(s) 253, 483, 486, 1204, 2286, 2336, 2938
FspBI CTAG 8 cut(s) 717, 1064, 1136, 1145, 1428, 1856, 2282, 2906
GlaI GCGC 2 cut(s) 1831, 2365
GluI GCNGC 7 cut(s) 253, 483, 486, 1204, 2286, 2336, 2938
GsaI CCCAGC 1 cut(s) 1619
GsuI CTGGAG 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 2367
HaeIII GGCC 5 cut(s) 104, 808, 1336, 1614, 2202
HapII CCGG 3 cut(s) 702, 1722, 2325
HhaI GCGC 2 cut(s) 1832, 2366
Hin6I GCGC 2 cut(s) 1830, 2364
HinP1I GCGC 2 cut(s) 1830, 2364
HincII GTYRAC 3 cut(s) 1218, 1804, 2155
HindII GTYRAC 3 cut(s) 1218, 1804, 2155
HindIII AAGCTT 4 cut(s) 1186, 1789, 2582, 2674
HpaI GTTAAC 1 cut(s) 1804
HpaII CCGG 3 cut(s) 702, 1722, 2325
HphI GGTGA 3 cut(s) 365, 2123, 2233
Hpy188I TCNGA 8 cut(s) 724, 793, 1243, 1494, 1558, 1732, 1951, 2419
HpyAV CCTTC 9 cut(s) 563, 565, 607, 875, 1091, 1163, 2130, 2400, 2425
HpyCH4III ACNGT 4 cut(s) 50, 2135, 2238, 2498
HpyCH4IV ACGT 1 cut(s) 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 1611, 2058, 2837
HpyF3I CTNAG 9 cut(s) 404, 792, 881, 1207, 1281, 1448, 1550, 1950, 2687
HpySE526I ACGT 1 cut(s) 1348
HspAI GCGC 2 cut(s) 1830, 2364
Kpn2I TCCGGA 1 cut(s) 2324
Ksp22I TGATCA 1 cut(s) 429
KspAI GTTAAC 1 cut(s) 1804
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 4 cut(s) 146, 1519, 1969, 2828
Lsp1109I GCAGC 5 cut(s) 239, 472, 494, 1215, 2272
LweI GCATC 2 cut(s) 703, 1977
MaeI CTAG 8 cut(s) 717, 1064, 1136, 1145, 1428, 1856, 2282, 2906
MaeII ACGT 1 cut(s) 1348
MaeIII GTNAC 6 cut(s) 295, 860, 1066, 1138, 1152, 2600
MfeI CAATTG 3 cut(s) 461, 608, 1235
MflI RGATCY 5 cut(s) 65, 1147, 1372, 1711, 1738
MhlI GDGCHC 3 cut(s) 1556, 1616, 2279
MlsI TGGCCA 3 cut(s) 808, 1336, 2202
MluNI TGGCCA 3 cut(s) 808, 1336, 2202
MlyI GAGTC 5 cut(s) 221, 466, 613, 1220, 1250
MmeI TCCRAC 4 cut(s) 115, 168, 1964, 2595
Mox20I TGGCCA 3 cut(s) 808, 1336, 2202
MroI TCCGGA 1 cut(s) 2324
MscI TGGCCA 3 cut(s) 808, 1336, 2202
MslI CAYNNNNRTG 6 cut(s) 1052, 1124, 2402, 2483, 2609, 2862
Msp20I TGGCCA 3 cut(s) 808, 1336, 2202
MspA1I CMGCKG 3 cut(s) 485, 2803, 3023
MspCI CTTAAG 1 cut(s) 2951
MspI CCGG 3 cut(s) 702, 1722, 2325
MspR9I CCNGG 5 cut(s) 101, 703, 1333, 2882, 2987
MunI CAATTG 3 cut(s) 461, 608, 1235
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 4 cut(s) 101, 1333, 2882, 2987
MwoI GCNNNNNNNGC 3 cut(s) 1611, 2058, 2837
NciI CCSGG 1 cut(s) 703
NcoI CCATGG 1 cut(s) 1759
NlaIV GGNNCC 5 cut(s) 582, 707, 1330, 1614, 2740
NmuCI GTSAC 2 cut(s) 295, 1152
NspI RCATGY 5 cut(s) 179, 1057, 1129, 1597, 2488
NspV TTCGAA 1 cut(s) 1085
OliI CACNNNNGTG 1 cut(s) 2402
PaeI GCATGC 2 cut(s) 1057, 1129
PciI ACATGT 1 cut(s) 2484
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 2825
PfoI TCCNGGA 2 cut(s) 701, 2985
PkrI GCNGC 7 cut(s) 254, 484, 487, 1205, 2287, 2337, 2939
PleI GAGTC 5 cut(s) 220, 465, 612, 1219, 1250
PpsI GAGTC 5 cut(s) 220, 465, 612, 1219, 1250
PpuMI RGGWCCY 2 cut(s) 1329, 1892
PscI ACATGT 1 cut(s) 2484
PshAI GACNNNNGTC 1 cut(s) 1897
PshBI ATTAAT 2 cut(s) 900, 1383
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 1556
Psp1406I AACGTT 1 cut(s) 1348
Psp5II RGGWCCY 2 cut(s) 1329, 1892
Psp6I CCWGG 4 cut(s) 99, 1331, 2880, 2985
PspFI CCCAGC 1 cut(s) 1615
PspGI CCWGG 4 cut(s) 99, 1331, 2880, 2985
PspN4I GGNNCC 5 cut(s) 582, 707, 1330, 1614, 2740
PspOMI GGGCCC 1 cut(s) 1612
PspPPI RGGWCCY 2 cut(s) 1329, 1892
PstI CTGCAG 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 5 cut(s) 65, 1147, 1372, 1711, 1738
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 1404, 2137, 3029
RsaNI GTAC 3 cut(s) 1403, 2136, 3028
RseI CAYNNNNRTG 6 cut(s) 1052, 1124, 2402, 2483, 2609, 2862
SacI GAGCTC 1 cut(s) 1556
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 7 cut(s) 253, 483, 486, 1204, 2286, 2336, 2938
SchI GAGTC 5 cut(s) 221, 466, 613, 1220, 1250
ScrFI CCNGG 5 cut(s) 101, 703, 1333, 2882, 2987
SduI GDGCHC 3 cut(s) 1556, 1616, 2279
SfaNI GCATC 2 cut(s) 703, 1977
SfcI CTRYAG 2 cut(s) 13, 2066
SfuI TTCGAA 1 cut(s) 1085
SinI GGWCC 7 cut(s) 400, 500, 647, 1329, 1892, 2302, 2795
SmiMI CAYNNNNRTG 6 cut(s) 1052, 1124, 2402, 2483, 2609, 2862
SmlI CTYRAG 6 cut(s) 731, 757, 1292, 1792, 2835, 2951
SmoI CTYRAG 6 cut(s) 731, 757, 1292, 1792, 2835, 2951
SphI GCATGC 2 cut(s) 1057, 1129
SsiI CCGC 4 cut(s) 2336, 2801, 2937, 3021
SspI AATATT 1 cut(s) 960
SspMI CTAG 8 cut(s) 717, 1064, 1136, 1145, 1428, 1856, 2282, 2906
SstI GAGCTC 1 cut(s) 1556
StyD4I CCNGG 5 cut(s) 99, 701, 1331, 2880, 2985
StyI CCWWGG 2 cut(s) 1759, 2158
TaaI ACNGT 4 cut(s) 50, 2135, 2238, 2498
TaiI ACGT 1 cut(s) 1351
TaqI TCGA 5 cut(s) 693, 1023, 1085, 1874, 2147
TatI WGTACW 1 cut(s) 3027
TauI GCSGC 2 cut(s) 2338, 2940
TscAI CASTG 7 cut(s) 502, 649, 863, 1471, 1839, 2556, 2902
TseFI GTSAC 2 cut(s) 295, 1152
TseI GCWGC 5 cut(s) 252, 482, 485, 1203, 2285
Tsp45I GTSAC 2 cut(s) 295, 1152
TspDTI ATGAA 6 cut(s) 433, 580, 1763, 2282, 2621, 2968
TspGWI ACGGA 2 cut(s) 1171, 2721
TspRI CASTG 7 cut(s) 502, 649, 863, 1471, 1839, 2556, 2902
Van91I CCANNNNNTGG 1 cut(s) 2825
Vha464I CTTAAG 1 cut(s) 2951
VneI GTGCAC 1 cut(s) 2275
VpaK11BI GGWCC 7 cut(s) 400, 500, 647, 1329, 1892, 2302, 2795
VspI ATTAAT 2 cut(s) 900, 1383
XagI CCTNNNNNAGG 2 cut(s) 348, 1854
XapI RAATTY 8 cut(s) 587, 784, 1436, 1927, 2014, 2511, 2655, 2727
XceI RCATGY 5 cut(s) 179, 1057, 1129, 1597, 2488
XcmI CCANNNNNNNNNTGG 1 cut(s) 2296
XmiI GTMKAC 1 cut(s) 2944
XspI CTAG 8 cut(s) 717, 1064, 1136, 1145, 1428, 1856, 2282, 2906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.