RLG00000028188

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
19871751 .. 19876384
4634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028188

Sequence Viewer

Length: 4191 bp
ATGGAGTTGGGAAGGTGGCTCAAACATGCTTATGCAATATCAATTGTGCTTTTTCTGCATATCAACGTTTCCTTATCCCTCGGCCGCCACCATGCTAACGTGACGACAAGGTGCCTAGAGAGGGAGAGGGGTGCACTGCTTGCTATCAAAGGAGGCCTGGTGGATGAATACAACCTGCTCTCTTCGTGGGGAAGCGAAGCCCAAAAGCGAGACTGTTGCGGATGGGAAAGAGTCCACTGCGATCACCAGACCGGCCATGTTCTTCAACTTCATCTGAATGCGGAAATGAAGGAGATCTCTTTGCAAGGTGAGTACCGTGAGCATATACAGAAAACTTTGCAAGGTGAAATTAGTCCTAAAATCATTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTCACAATTCCTTCACTGCCAGCCAAATTCCAGCACTCATTTGTTCTCTATCCAATTTAAGACACCTAGATCTGAGTTTGAATAGCCTCATCGGGAGCAAAATTCCAAAGCTCATTGGTAATCTGACCAATTTAAGATATCTAGATCTGTCTGAGACTCACTTGAGTGGTGAAATTCAATATCATCACCTTGGAAACCTTACTCACTTGCAGTATCTCAATCTCGGGTGGAATGACTTCACTCAGGCTGTAGAAAACCTCAATTGGCTCCCACATCTTTCTTCTCTAAAATACCTCGACCTGAGTTTAGCCAATCTAAGTAAGGCTTCTGATTGGCTGGAAACAATAAACAAGCTCCCTGACCTAAGAAACTTGACCTTAATAGGATGTGATCTTCCTCCTCCAATTCTTTCCACTCTTTCTCACATAAATTCTTCCAATTCTCTTGTAAGTGTTGAATTGTCTGAAAATCGTGCTGTCAGTTCTTCAATATTCAAATGGTTGTGCAACTACAATACCACCCTCGTTCATATTGACCTCTCTTCCACCCAATTAAGTGGTTTGATTCCCGATGCTTTCAAAAATATGAATTCACTTGCATATCTTGGCCTCCGTGATATCCAATTAAGTGATTTGACTGCTAATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTTCCGATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTCTTTCAACCAATTAAGTGGTTTGATTCCCGATGCTGTTGCAAACATTAGCTCACTTGTAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCGTATGCTTTTGCAAACATGAGCTCACTTAAATATCTGCACCTCTCTTACAACCAATTAAGTGGTTTGATTCCTGATGCTTTTGCAAACATGAGCTCACTTAAATATCTGCACCTCTCTTCCAACCAATTAAGAGGTTTGATTCCGTATGCTTTTGCAAACATGAGCTCACTTAAATATCTGTACCTCTCTTCCAACCAATTAAGCGGTTTGATTCCTGATGCTTTTGCAAACATGAGATCACTTGAAAATTTGTACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATTTGTACCTCTATTCCAACCAATTAAGTGATTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTAAATATCTGCACCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTATTCGAACCAATTAAGTGATTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTAAATATCTTGACCTCTCTTCCAACCAATTAGGTGATTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCAAATCTTGAACTTTCTAATAACCCACTTGAAGGAGGAATCCCTGCAGCATCCATTGGCCAGTTATGTAATTTGCGGACCTTGGCCATTTCAGACAGTAGGTTACATGGACAGTTCTTTGAATTTGTTCAAACATTGTCTATATGTACTCAAAACTCATTGGAGAGATTGCATCTCTCTCATAATGATCTTGCTGGGTCATTGCCTAATCTTGCAAACTTCCAATCATTGAAGGAATTATATCTCTCAAAAAACCAGTTGAGTGGAATCATTCCTGATAGTATTGGAAAGTTGTCTTCTTTGATGACATTAGATCTCAAAGAAAATAGGATAAGCGGAATGATTCCGGAGAGTATTGGGCAAATGTCATTGTTGAGAGAGTTGTATCTACAGGGAAACCAACTTAGGGGAATGATACCGGAGAGTATTGGGAAAATGTCATTGTTGAGAGAGTTGTATCTACAGGGAAACCAACTTAGCGGAATGATACCGGAGAGTATTGGGAATTTGTCAGCCTTGCAAACATTAGACCTCTCCGGTAATCGATTAAACGGGACAGTACCTGAAAGTATTGGACAATTGTCAAAACTCTACAAGATGAATCTTAGTAAGAATTCTTTGGAAGGGGTAATTTCGGAAGTTCATTTTTCAAAATTGTCTGCACTAGAAGCATTGGATTTATCCGATAACCCATTAGTTTTCAAAGTCAGTTCTGACTGGGTTCCTCCTTTTCAATTGGGCTCTCTAAGTATGAGGTCTTGCCAGATGGGGACATATTTCCCAAACTGGCTTCGAACTCAACAAAGTCTTTCCAAACTTGATATTTCTTCTGCTGGAATTTCAGATGTCCTTCCAAGTTGGTTCTGGAGTCTCTTTGGTAACACTCAGACAATAGATCTCTCTCATAATCAAATTAGAGGAACATTTGAGAGTTCAACATTGAATGTTACATCATTGCCTGGAGTTGAATTTCATTTCGGTTCCAATCAATTCGAAGGTTCAATACCGTCAATTTTATTTGCTGCTTCATATTTGGATCTCTCCGATAATAAGTTTTCAGATCTGACAGCCTTGTGTGTTACTTCAGAGCTTCAAAGTTTAAAGTTTCTTGATCTCTCAGGTAATCATGTTTCAGGAGAAATTCCAGATTGTTGGAGGCATTTGGTCTCCCTAGAACTACTCGATTTGAGTAGCAATGCTTTTTCCGGGAAAATCCCGACCACTATAGGCACTTTATTTCGAATGGAAACACTGAAATTAAGAAGCAACAAACTTGTGGGAGAATTGCCTTCATCCTTGAAGAATTGTAAGAGCTTAAAAGTGATTGAGCTCGGAGACAATAAGCTTTCAGGATCAGTCCCTGAATGGTTGGGAGTTAGTTTTCCAAATTTGGTTATACTAATGCTTCAATCTAATCAGTTTAGAGGGAGCTTGCCTTCACAGTTATCACCAGGACCAACTATGTATATGGCGGAAGCACCTATGATGCCATCTGATTATTACGAGGATGATGCAACCTTCATGTGGAAAGGAAGAATGTCAGCATACAAAAGTATTTTGGGACTTGTCAAGAGAATTGATCTCTCAAGCAACAAAATAACAGGGGAAATTCCAAGTGAGATCACTCATCTTGTTGGTTTGGTTTCTTTGAACCTTTCAAGAAACCATCTAACAGGACATATTCCTTCACAGATTGGAAAGTTGCAGTCATTAGATTCTCTTGATTTGTCAAGAAACCGGATAAATGGGGAGATTCCGACAAGCCTTGCTGGGATCGATCGACTTGCTTACTTGGACTTGTCATACAACGACTTATCTGGTAAAATTCCAACTGGTACTCAACTCCAAGACCCTTCCTCTTTTGCTGGAAATCTTAAATTGTGTGGATTTCCACTCCAAAAGATTTGTGATCCGGAAGGAAACGGTCCGAGCAATGAAGAAGATCCAGATGAGCTCATCACGCAGGCGTCAGCATCTTCTGAGACAAGTACGATGGACAATTGTACAAGTTTCCCAGCAGTGAAGGAGTGTTTATGGAAGTACTAG

Protein Analysis

1397

Amino Acids

154.01

Weight (kDa)

5.46

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 81 4.4e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 111 - 268 2.4e-12 Leucine-rich repeat region
LRR_8 PF13855 339 - 389 2.4e-10 Leucine rich repeat
LRR_8 PF13855 402 - 461 1.5e-14 Leucine rich repeat
LRR_5 PF13306 402 - 524 5.8e-11 BspA type Leucine rich repeat region (6 copies)
LRR_5 PF13306 443 - 553 1.3e-10 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 449 - 509 1.1e-16 Leucine rich repeat
LRR_14 PF23598 470 - 572 1.6e-06 Leucine-rich repeat region
LRR_8 PF13855 499 - 557 4.7e-16 Leucine rich repeat
LRR_5 PF13306 539 - 651 1.7e-10 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 547 - 605 1.2e-13 Leucine rich repeat
LRR_8 PF13855 593 - 653 1.9e-14 Leucine rich repeat
LRR_5 PF13306 610 - 723 2e-11 BspA type Leucine rich repeat region (6 copies)
LRR_5 PF13306 635 - 723 4.8e-09 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 641 - 701 2.1e-14 Leucine rich repeat
LRR_14 PF23598 648 - 799 1e-06 Leucine-rich repeat region
LRR_8 PF13855 666 - 725 4.6e-14 Leucine rich repeat
LRR_8 PF13855 690 - 749 2.5e-07 Leucine rich repeat
LRR_14 PF23598 781 - 869 9.1e-09 Leucine-rich repeat region
LRR_8 PF13855 791 - 850 3.1e-13 Leucine rich repeat
LRR_8 PF13855 856 - 898 1.1e-06 Leucine rich repeat
LRR_14 PF23598 857 - 942 1.6e-09 Leucine-rich repeat region
LRR_8 PF13855 896 - 947 1.7e-06 Leucine rich repeat
LRR_8 PF13855 1059 - 1115 3.9e-07 Leucine rich repeat
LRR_14 PF23598 1060 - 1161 4.1e-07 Leucine-rich repeat region
LRR_14 PF23598 1254 - 1317 7.8e-06 Leucine-rich repeat region
LRR_8 PF13855 1264 - 1320 1.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 111
AccIII TCCGGA 2 cut(s) 2491, 4057
AciI CCGC 8 cut(s) 85, 219, 281, 1602, 2221, 2481, 2625, 3617
AclI AACGTT 1 cut(s) 66
AclWI GGATC 5 cut(s) 3189, 3505, 3926, 4049, 4082
AcoI YGGCCR 4 cut(s) 82, 253, 2203, 2229
AcuI CTGAAG 1 cut(s) 3213
AcyI GRCGYC 1 cut(s) 4112
AfiI CCNNNNNNNGG 4 cut(s) 121, 2177, 2551, 3669
AjnI CCWGG 3 cut(s) 156, 3103, 3595
AleI CACNNNNGTG 1 cut(s) 561
Alw26I GTCTC 6 cut(s) 204, 545, 3020, 3316, 3474, 4121
Alw44I GTGCAC 1 cut(s) 132
AlwI GGATC 5 cut(s) 3189, 3505, 3926, 4049, 4082
AlwNI CAGNNNCTG 2 cut(s) 2708, 3506
Ama87I CYCGRG 1 cut(s) 620
Aor13HI TCCGGA 2 cut(s) 2491, 4057
AoxI GGCC 6 cut(s) 82, 154, 253, 1003, 2203, 2229
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 373, 2192, 3167
Asp700I GAANNNNTTC 2 cut(s) 632, 2271
AspS9I GGNCC 4 cut(s) 391, 2223, 3599, 4070
AsuC2I CCSGG 1 cut(s) 3352
AsuHPI GGTGA 7 cut(s) 236, 320, 356, 575, 578, 2045, 3585
AsuII TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 4 cut(s) 391, 2223, 3599, 4070
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 2 cut(s) 2205, 2231
BanI GGYRCC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 3132, 3164
BbsI GAAGAC 1 cut(s) 2433
BbvI GCAGC 3 cut(s) 385, 2204, 3154
BccI CCATC 5 cut(s) 216, 2905, 3643, 3819, 4132
BciT130I CCWGG 3 cut(s) 158, 3105, 3597
BcnI CCSGG 1 cut(s) 3352
BcoDI GTCTC 6 cut(s) 204, 545, 3020, 3316, 3474, 4121
BfaI CTAG 6 cut(s) 116, 464, 539, 2810, 3317, 4189
BfmI CTRYAG 5 cut(s) 645, 2190, 2534, 2606, 3369
BfuAI ACCTGC 1 cut(s) 183
BglII AGATCT 6 cut(s) 294, 466, 541, 2458, 3040, 3205
BisI GCNGC 4 cut(s) 85, 374, 2193, 3168
BlsI GCNGC 4 cut(s) 86, 375, 2194, 3169
BmcAI AGTACT 1 cut(s) 4187
Bme1390I CCNGG 4 cut(s) 158, 3105, 3352, 3597
Bme18I GGWCC 4 cut(s) 391, 2223, 3599, 4070
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 4 cut(s) 391, 2223, 3599, 4070
BmiI GGNNCC 4 cut(s) 113, 665, 2868, 3127
BmrFI CCNGG 4 cut(s) 158, 3105, 3352, 3597
BmrI ACTGGG 1 cut(s) 2872
BmuI ACTGGG 1 cut(s) 2872
BoxI GACNNNNGTC 2 cut(s) 396, 2725
BpiI GAAGAC 1 cut(s) 2433
BpmI CTGGAG 2 cut(s) 3031, 3126
Bpu14I TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
BpuEI CTTGAG 2 cut(s) 580, 3715
BpuMI CCSGG 1 cut(s) 3352
Bsa29I ATCGAT 2 cut(s) 2689, 3921
BsaHI GRCGYC 1 cut(s) 4112
BsaI GGTCTC 1 cut(s) 3316
BsaJI CCNNGG 3 cut(s) 79, 586, 2226
BsaWI WCCGGW 6 cut(s) 2491, 2563, 2635, 2681, 3882, 4057
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 2177, 2551, 3669
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 5 cut(s) 2206, 2401, 2867, 2936, 3982
Bse3DI GCAATG 4 cut(s) 2345, 3098, 3346, 4084
BseAI TCCGGA 2 cut(s) 2491, 4057
BseBI CCWGG 3 cut(s) 158, 3105, 3597
BseCI ATCGAT 2 cut(s) 2689, 3921
BseDI CCNNGG 3 cut(s) 79, 586, 2226
BseGI GGATG 6 cut(s) 169, 227, 788, 2195, 3437, 3658
BseLI CCNNNNNNNGG 4 cut(s) 121, 2177, 2551, 3669
BseMI GCAATG 4 cut(s) 2345, 3098, 3346, 4084
BseMII CTCAG 8 cut(s) 409, 461, 540, 653, 689, 3044, 3276, 4116
BseNI ACTGG 5 cut(s) 2206, 2401, 2867, 2936, 3982
BseRI GAGGAG 1 cut(s) 786
BseSI GKGCMC 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 385, 2204, 3154
BseYI CCCAGC 3 cut(s) 2339, 3914, 4159
BsgI GTGCAG 4 cut(s) 1418, 1490, 1850, 2790
Bsh1285I CGRYCG 2 cut(s) 85, 3925
BshFI GGCC 6 cut(s) 84, 156, 255, 1005, 2205, 2231
BshNI GGYRCC 1 cut(s) 111
BshVI ATCGAT 2 cut(s) 2689, 3921
BsiEI CGRYCG 2 cut(s) 85, 3925
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 8 cut(s) 252, 2492, 2564, 2636, 2682, 3351, 3883, 4058
BslFI GGGAC 4 cut(s) 2713, 2929, 3488, 3720
BslI CCNNNNNNNGG 4 cut(s) 121, 2177, 2551, 3669
BsmAI GTCTC 6 cut(s) 204, 545, 3020, 3316, 3474, 4121
BsmFI GGGAC 4 cut(s) 2713, 2929, 3488, 3720
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 6 cut(s) 84, 156, 255, 1005, 2205, 2231
Bso31I GGTCTC 1 cut(s) 3316
BsoBI CYCGRG 1 cut(s) 620
Bsp119I TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
Bsp13I TCCGGA 2 cut(s) 2491, 4057
Bsp1407I TGTACA 1 cut(s) 4148
BspACI CCGC 8 cut(s) 85, 219, 281, 1602, 2221, 2481, 2625, 3617
BspANI GGCC 6 cut(s) 84, 156, 255, 1005, 2205, 2231
BspCNI CTCAG 8 cut(s) 408, 462, 541, 652, 690, 3043, 3275, 4117
BspDI ATCGAT 2 cut(s) 2689, 3921
BspEI TCCGGA 2 cut(s) 2491, 4057
BspLI GGNNCC 4 cut(s) 113, 665, 2868, 3127
BspMAI CTGCAG 1 cut(s) 2194
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 5 cut(s) 3189, 3505, 3926, 4049, 4082
BspT104I TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 3316
BsrDI GCAATG 4 cut(s) 2345, 3098, 3346, 4084
BsrFI RCCGGY 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 4148
BsrI ACTGG 5 cut(s) 2206, 2401, 2867, 2936, 3982
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 79, 586, 2226
BssNI GRCGYC 1 cut(s) 4112
BssT1I CCWWGG 2 cut(s) 586, 2226
Bst2UI CCWGG 3 cut(s) 158, 3105, 3597
Bst4CI ACNGT 8 cut(s) 215, 317, 2243, 2259, 2704, 3153, 3588, 4070
BstACI GRCGYC 1 cut(s) 4112
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 4148
BstBI TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
BstC8I GCNNGC 4 cut(s) 141, 418, 3578, 4110
BstF5I GGATG 6 cut(s) 169, 227, 788, 2195, 3437, 3658
BstMAI GTCTC 6 cut(s) 204, 545, 3020, 3316, 3474, 4121
BstMCI CGRYCG 2 cut(s) 85, 3925
BstMWI GCNNNNNNNGC 4 cut(s) 55, 140, 2813, 4105
BstNI CCWGG 3 cut(s) 158, 3105, 3597
BstNSI RCATGY 1 cut(s) 29
BstPAI GACNNNNGTC 2 cut(s) 396, 2725
BstSCI CCNGG 4 cut(s) 156, 3103, 3350, 3595
BstSFI CTRYAG 5 cut(s) 645, 2190, 2534, 2606, 3369
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 385, 2204, 3154
BstV2I GAAGAC 1 cut(s) 2433
BstX2I RGATCY 8 cut(s) 294, 466, 541, 2458, 3040, 3181, 3205, 4087
BstYI RGATCY 8 cut(s) 294, 466, 541, 2458, 3040, 3181, 3205, 4087
BstZI CGGCCG 1 cut(s) 82
Bsu15I ATCGAT 2 cut(s) 2689, 3921
BsuRI GGCC 6 cut(s) 84, 156, 255, 1005, 2205, 2231
BsuTUI ATCGAT 2 cut(s) 2689, 3921
BtsCI GGATG 6 cut(s) 169, 227, 788, 2195, 3437, 3658
BtsI GCAGTG 4 cut(s) 134, 235, 411, 4170
BtsIMutI CAGTG 5 cut(s) 134, 235, 411, 3395, 4170
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 4 cut(s) 141, 418, 3578, 4110
CaiI CAGNNNCTG 2 cut(s) 2708, 3506
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 391, 2223, 3599, 4070
ClaI ATCGAT 2 cut(s) 2689, 3921
CpoI CGGWCCG 1 cut(s) 4070
CseI GACGC 1 cut(s) 4101
CspI CGGWCCG 1 cut(s) 4070
DraI TTTAAA 1 cut(s) 3246
EaeI YGGCCR 4 cut(s) 82, 253, 2203, 2229
EagI CGGCCG 1 cut(s) 82
EciI GGCGGA 1 cut(s) 3632
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 586, 2226
Eco147I AGGCCT 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 3316
Eco32I GATATC 2 cut(s) 536, 1015
Eco47I GGWCC 4 cut(s) 391, 2223, 3599, 4070
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 3213
Eco88I CYCGRG 1 cut(s) 620
EcoRI GAATTC 2 cut(s) 985, 2758
EcoRII CCWGG 3 cut(s) 156, 3103, 3595
EcoRV GATATC 2 cut(s) 536, 1015
EcoT14I CCWWGG 2 cut(s) 586, 2226
ErhI CCWWGG 2 cut(s) 586, 2226
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 4 cut(s) 2713, 2929, 3488, 3720
Fnu4HI GCNGC 4 cut(s) 85, 374, 2193, 3168
FokI GGATG 6 cut(s) 176, 234, 795, 2182, 3424, 3665
Fsp4HI GCNGC 4 cut(s) 85, 374, 2193, 3168
FspBI CTAG 6 cut(s) 116, 464, 539, 2810, 3317, 4189
GluI GCNGC 4 cut(s) 85, 374, 2193, 3168
GsaI CCCAGC 3 cut(s) 2343, 3918, 4163
GsuI CTGGAG 2 cut(s) 3031, 3126
HaeIII GGCC 6 cut(s) 84, 156, 255, 1005, 2205, 2231
HapII CCGG 8 cut(s) 252, 2492, 2564, 2636, 2682, 3351, 3883, 4058
HgaI GACGC 1 cut(s) 4101
Hin1I GRCGYC 1 cut(s) 4112
HindIII AAGCTT 1 cut(s) 3488
HpaII CCGG 8 cut(s) 252, 2492, 2564, 2636, 2682, 3351, 3883, 4058
HphI GGTGA 7 cut(s) 236, 320, 356, 575, 578, 2045, 3585
Hpy166II GTNNAC 2 cut(s) 134, 235
Hpy8I GTNNAC 2 cut(s) 134, 235
HpyCH4III ACNGT 8 cut(s) 215, 317, 2243, 2259, 2704, 3153, 3588, 4070
HpyCH4IV ACGT 2 cut(s) 66, 99
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 140, 2813, 4105
HpySE526I ACGT 2 cut(s) 66, 99
Hsp92I GRCGYC 1 cut(s) 4112
Kpn2I TCCGGA 2 cut(s) 2491, 4057
LmnI GCTCC 4 cut(s) 492, 669, 756, 3573
Lsp1109I GCAGC 3 cut(s) 385, 2204, 3154
MaeI CTAG 6 cut(s) 116, 464, 539, 2810, 3317, 4189
MaeII ACGT 2 cut(s) 66, 99
MaeIII GTNAC 8 cut(s) 100, 398, 1210, 1714, 2247, 3023, 3091, 3223
MfeI CAATTG 5 cut(s) 42, 658, 2723, 2879, 4144
MflI RGATCY 8 cut(s) 294, 466, 541, 2458, 3040, 3181, 3205, 4087
MlsI TGGCCA 2 cut(s) 2205, 2231
MluNI TGGCCA 2 cut(s) 2205, 2231
MlyI GAGTC 3 cut(s) 240, 547, 3022
Mox20I TGGCCA 2 cut(s) 2205, 2231
MroI TCCGGA 2 cut(s) 2491, 4057
MroXI GAANNNNTTC 2 cut(s) 632, 2271
MscI TGGCCA 2 cut(s) 2205, 2231
MslI CAYNNNNRTG 3 cut(s) 30, 276, 561
Msp20I TGGCCA 2 cut(s) 2205, 2231
MspI CCGG 8 cut(s) 252, 2492, 2564, 2636, 2682, 3351, 3883, 4058
MspR9I CCNGG 4 cut(s) 158, 3105, 3352, 3597
MunI CAATTG 5 cut(s) 42, 658, 2723, 2879, 4144
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 3 cut(s) 158, 3105, 3597
MwoI GCNNNNNNNGC 4 cut(s) 55, 140, 2813, 4105
NciI CCSGG 1 cut(s) 3352
NlaIV GGNNCC 4 cut(s) 113, 665, 2868, 3127
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 100, 398
NspI RCATGY 1 cut(s) 29
NspV TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
OliI CACNNNNGTG 1 cut(s) 561
PceI AGGCCT 1 cut(s) 156
PctI GAATGC 1 cut(s) 283
PdmI GAANNNNTTC 2 cut(s) 632, 2271
PfoI TCCNGGA 1 cut(s) 3350
PkrI GCNGC 4 cut(s) 86, 375, 2194, 3169
Ple19I CGATCG 1 cut(s) 3925
PleI GAGTC 3 cut(s) 239, 547, 3021
PpsI GAGTC 3 cut(s) 239, 547, 3021
PshAI GACNNNNGTC 2 cut(s) 396, 2725
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 156, 3103, 3595
PspFI CCCAGC 3 cut(s) 2339, 3914, 4159
PspGI CCWGG 3 cut(s) 156, 3103, 3595
PspN4I GGNNCC 4 cut(s) 113, 665, 2868, 3127
PspPI GGNCC 4 cut(s) 391, 2223, 3599, 4070
PstI CTGCAG 1 cut(s) 2194
PstNI CAGNNNCTG 2 cut(s) 2708, 3506
PsuI RGATCY 8 cut(s) 294, 466, 541, 2458, 3040, 3181, 3205, 4087
PvuI CGATCG 1 cut(s) 3925
RseI CAYNNNNRTG 3 cut(s) 30, 276, 561
Rsr2I CGGWCCG 1 cut(s) 4070
RsrII CGGWCCG 1 cut(s) 4070
SatI GCNGC 4 cut(s) 85, 374, 2193, 3168
Sau96I GGNCC 4 cut(s) 391, 2223, 3599, 4070
ScaI AGTACT 1 cut(s) 4187
SchI GAGTC 3 cut(s) 240, 547, 3022
ScrFI CCNGG 4 cut(s) 158, 3105, 3352, 3597
SfcI CTRYAG 5 cut(s) 645, 2190, 2534, 2606, 3369
SfuI TTCGAA 4 cut(s) 1949, 2938, 3138, 3385
SinI GGWCC 4 cut(s) 391, 2223, 3599, 4070
SmiMI CAYNNNNRTG 3 cut(s) 30, 276, 561
SmlI CTYRAG 2 cut(s) 559, 3730
SmoI CTYRAG 2 cut(s) 559, 3730
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 8 cut(s) 85, 219, 281, 1602, 2221, 2481, 2625, 3617
SspI AATATT 2 cut(s) 386, 888
SspMI CTAG 6 cut(s) 116, 464, 539, 2810, 3317, 4189
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 4 cut(s) 156, 3103, 3350, 3595
StyI CCWWGG 2 cut(s) 586, 2226
TaaI ACNGT 8 cut(s) 215, 317, 2243, 2259, 2704, 3153, 3588, 4070
TaiI ACGT 2 cut(s) 69, 102
TaqI TCGA 9 cut(s) 693, 1949, 2689, 2938, 3138, 3327, 3385, 3921, 3925
TatI WGTACW 3 cut(s) 2291, 4148, 4185
TauI GCSGC 1 cut(s) 87
TscAI CASTG 5 cut(s) 141, 242, 418, 3402, 4170
TseFI GTSAC 2 cut(s) 100, 398
TseI GCWGC 3 cut(s) 373, 2192, 3167
Tsp45I GTSAC 2 cut(s) 100, 398
TspGWI ACGGA 3 cut(s) 998, 1386, 1530
TspRI CASTG 5 cut(s) 141, 242, 418, 3402, 4170
VneI GTGCAC 1 cut(s) 132
VpaK11BI GGWCC 4 cut(s) 391, 2223, 3599, 4070
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 3006
XmnI GAANNNNTTC 2 cut(s) 632, 2271
XspI CTAG 6 cut(s) 116, 464, 539, 2810, 3317, 4189
ZrmI AGTACT 1 cut(s) 4187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.