regulation of response to stimulus
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 324 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 395 |
| AclWI | GGATC | 1 cut(s) | 388 |
| AcoI | YGGCCR | 1 cut(s) | 35 |
| AcsI | RAATTY | 2 cut(s) | 13, 439 |
| AcuI | CTGAAG | 4 cut(s) | 59, 120, 137, 520 |
| AdeI | CACNNNGTG | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 527 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 395 |
| AluBI | AGCT | 5 cut(s) | 55, 73, 259, 338, 540 |
| AluI | AGCT | 5 cut(s) | 55, 73, 259, 338, 540 |
| Alw26I | GTCTC | 1 cut(s) | 301 |
| AlwI | GGATC | 1 cut(s) | 388 |
| AoxI | GGCC | 1 cut(s) | 35 |
| ApeKI | GCWGC | 1 cut(s) | 222 |
| ApoI | RAATTY | 2 cut(s) | 13, 439 |
| AseI | ATTAAT | 1 cut(s) | 132 |
| AspS9I | GGNCC | 2 cut(s) | 157, 266 |
| AvaII | GGWCC | 2 cut(s) | 157, 266 |
| BalI | TGGCCA | 1 cut(s) | 37 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 518, 550 |
| BbvI | GCAGC | 1 cut(s) | 234 |
| BccI | CCATC | 1 cut(s) | 278 |
| BcoDI | GTCTC | 1 cut(s) | 301 |
| BfaI | CTAG | 1 cut(s) | 411 |
| BisI | GCNGC | 1 cut(s) | 223 |
| BlsI | GCNGC | 1 cut(s) | 224 |
| Bme18I | GGWCC | 2 cut(s) | 157, 266 |
| BmgT120I | GGNCC | 2 cut(s) | 157, 266 |
| BmiI | GGNNCC | 2 cut(s) | 268, 551 |
| BsaI | GGTCTC | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 1 cut(s) | 21 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseDI | CCNNGG | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseMII | CTCAG | 3 cut(s) | 124, 232, 555 |
| BseXI | GCAGC | 1 cut(s) | 234 |
| BshFI | GGCC | 1 cut(s) | 37 |
| BslFI | GGGAC | 1 cut(s) | 252 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 1 cut(s) | 252 |
| BsnI | GGCC | 1 cut(s) | 37 |
| Bso31I | GGTCTC | 1 cut(s) | 301 |
| Bsp143I | GATC | 3 cut(s) | 91, 113, 380 |
| BspANI | GGCC | 1 cut(s) | 37 |
| BspCNI | CTCAG | 3 cut(s) | 123, 231, 554 |
| BspLI | GGNNCC | 2 cut(s) | 268, 551 |
| BspPI | GGATC | 1 cut(s) | 388 |
| BspTNI | GGTCTC | 1 cut(s) | 301 |
| BssECI | CCNNGG | 1 cut(s) | 21 |
| BssMI | GATC | 3 cut(s) | 91, 113, 380 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 558 |
| Bst6I | CTCTTC | 3 cut(s) | 64, 156, 315 |
| BstC8I | GCNNGC | 1 cut(s) | 53 |
| BstDEI | CTNAG | 3 cut(s) | 110, 218, 541 |
| BstF5I | GGATG | 1 cut(s) | 270 |
| BstKTI | GATC | 3 cut(s) | 94, 116, 383 |
| BstMAI | GTCTC | 1 cut(s) | 301 |
| BstMBI | GATC | 3 cut(s) | 91, 113, 380 |
| BstV1I | GCAGC | 1 cut(s) | 234 |
| BstX2I | RGATCY | 1 cut(s) | 380 |
| BstYI | RGATCY | 1 cut(s) | 380 |
| BsuRI | GGCC | 1 cut(s) | 37 |
| BtsCI | GGATG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 1 cut(s) | 554 |
| Cac8I | GCNNGC | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 2 cut(s) | 157, 266 |
| Csp6I | GTAC | 1 cut(s) | 526 |
| CviAII | CATG | 1 cut(s) | 292 |
| CviJI | RGCY | 7 cut(s) | 37, 55, 73, 259, 338, 414, 540 |
| CviKI_1 | RGCY | 7 cut(s) | 37, 55, 73, 259, 338, 414, 540 |
| CviQI | GTAC | 1 cut(s) | 526 |
| DdeI | CTNAG | 3 cut(s) | 110, 218, 541 |
| DpnI | GATC | 3 cut(s) | 93, 115, 382 |
| DpnII | GATC | 3 cut(s) | 91, 113, 380 |
| DraIII | CACNNNGTG | 1 cut(s) | 395 |
| EaeI | YGGCCR | 1 cut(s) | 35 |
| Eam1104I | CTCTTC | 3 cut(s) | 64, 156, 315 |
| EarI | CTCTTC | 3 cut(s) | 64, 156, 315 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco31I | GGTCTC | 1 cut(s) | 301 |
| Eco32I | GATATC | 2 cut(s) | 6, 210 |
| Eco47I | GGWCC | 2 cut(s) | 157, 266 |
| Eco57I | CTGAAG | 4 cut(s) | 59, 120, 137, 520 |
| EcoO109I | RGGNCCY | 2 cut(s) | 157, 266 |
| EcoRI | GAATTC | 1 cut(s) | 439 |
| EcoRV | GATATC | 2 cut(s) | 6, 210 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 295 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 327, 359 |
| FaqI | GGGAC | 1 cut(s) | 252 |
| FatI | CATG | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 1 cut(s) | 223 |
| FokI | GGATG | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 1 cut(s) | 223 |
| FspBI | CTAG | 1 cut(s) | 411 |
| GluI | GCNGC | 1 cut(s) | 223 |
| HaeIII | GGCC | 1 cut(s) | 37 |
| Hin1II | CATG | 1 cut(s) | 295 |
| HincII | GTYRAC | 1 cut(s) | 106 |
| HindII | GTYRAC | 1 cut(s) | 106 |
| HindIII | AAGCTT | 1 cut(s) | 336 |
| HinfI | GANTC | 1 cut(s) | 175 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 491 |
| Hpy188I | TCNGA | 4 cut(s) | 113, 303, 502, 544 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 475 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 491 |
| HpyAV | CCTTC | 1 cut(s) | 528 |
| HpyCH4III | ACNGT | 1 cut(s) | 558 |
| HpyF3I | CTNAG | 3 cut(s) | 110, 218, 541 |
| Hsp92II | CATG | 1 cut(s) | 295 |
| Kzo9I | GATC | 3 cut(s) | 91, 113, 380 |
| LpnPI | CCDG | 3 cut(s) | 111, 140, 288 |
| Lsp1109I | GCAGC | 1 cut(s) | 234 |
| MaeI | CTAG | 1 cut(s) | 411 |
| MalI | GATC | 3 cut(s) | 93, 115, 382 |
| MboI | GATC | 3 cut(s) | 91, 113, 380 |
| MboII | GAAGA | 8 cut(s) | 51, 86, 129, 132, 143, 170, 302, 489 |
| MflI | RGATCY | 1 cut(s) | 380 |
| MlsI | TGGCCA | 1 cut(s) | 37 |
| MluCI | AATT | 3 cut(s) | 13, 133, 439 |
| MluNI | TGGCCA | 1 cut(s) | 37 |
| MnlI | CCTC | 6 cut(s) | 119, 157, 202, 242, 392, 491 |
| Mox20I | TGGCCA | 1 cut(s) | 37 |
| MscI | TGGCCA | 1 cut(s) | 37 |
| MseI | TTAA | 1 cut(s) | 132 |
| MslI | CAYNNNNRTG | 1 cut(s) | 290 |
| Msp20I | TGGCCA | 1 cut(s) | 37 |
| NdeII | GATC | 3 cut(s) | 91, 113, 380 |
| NlaIII | CATG | 1 cut(s) | 295 |
| NlaIV | GGNNCC | 2 cut(s) | 268, 551 |
| PfeI | GAWTC | 1 cut(s) | 175 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 395 |
| PkrI | GCNGC | 1 cut(s) | 224 |
| PpuMI | RGGWCCY | 2 cut(s) | 157, 266 |
| PshBI | ATTAAT | 1 cut(s) | 132 |
| PsiI | TTATAA | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 2 cut(s) | 157, 266 |
| PspN4I | GGNNCC | 2 cut(s) | 268, 551 |
| PspPI | GGNCC | 2 cut(s) | 157, 266 |
| PspPPI | RGGWCCY | 2 cut(s) | 157, 266 |
| PsuI | RGATCY | 1 cut(s) | 380 |
| RsaI | GTAC | 1 cut(s) | 527 |
| RsaNI | GTAC | 1 cut(s) | 526 |
| RseI | CAYNNNNRTG | 1 cut(s) | 290 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 1 cut(s) | 223 |
| Sau3AI | GATC | 3 cut(s) | 91, 113, 380 |
| Sau96I | GGNCC | 2 cut(s) | 157, 266 |
| SinI | GGWCC | 2 cut(s) | 157, 266 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 290 |
| Sse9I | AATT | 3 cut(s) | 13, 133, 439 |
| SspI | AATATT | 1 cut(s) | 198 |
| SspMI | CTAG | 1 cut(s) | 411 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaaI | ACNGT | 1 cut(s) | 558 |
| TasI | AATT | 3 cut(s) | 13, 133, 439 |
| TatI | WGTACW | 1 cut(s) | 525 |
| TfiI | GAWTC | 1 cut(s) | 175 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 1 cut(s) | 561 |
| TseI | GCWGC | 1 cut(s) | 222 |
| TspRI | CASTG | 1 cut(s) | 561 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 395 |
| VpaK11BI | GGWCC | 2 cut(s) | 157, 266 |
| VspI | ATTAAT | 1 cut(s) | 132 |
| XapI | RAATTY | 2 cut(s) | 13, 439 |
| XspI | CTAG | 1 cut(s) | 411 |