Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000028

Physical Location & Seq

Genomic Coordinates Reverse (-)

47592333 .. 47595257

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

ATGGAGTTGGGAAGGTGGCTCAGACATGCTTTTGCAATATCAATTGTGCTTCTTCTGCATATCAACGGTTCCTTATCACTCGGCAACCACCATGCTAACTTGACGACGAGGTGCCTTGAGAGGGAGAGGGGTGCACTCCTTGCTATCAAAAGAGACCTGATGGATGAATACAACCTGCTCTCTTCTTGGGGAAGCGAAGCCAAAAAGCAAGACTGTTGCCGATGGGAAAGAGTCCACTGCGATCACCAGACGGGCCATGTTACTCAACATCATCTTGGAGGACTGGAGGTGATCTCTTCACTAGGTGAGTTTAAGACTTACAAATATTTTAAAGGAATAGTTAGTCCTAAACTCATTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTCACAATTTCTTCAATGCCAACCAAATTCCAGCGCTCATTTTTTCTTTGTTCAATTTAAGACACCTAGATCTCCATTACAATGGCCTCACTGGGAGCAAAATTCCGGAGCTCATTAGTAATCTGACCAATTTAAGATATTTAGATCTCTCTGAGAATTTCTTTGAAGGTGATACTCCATATCATCAGCTTGGAAATCTTACTCATTTGCAGTATCTCAATCTCGGGTATAATGACATCACTCATGGTGTAGAAAACTTCCATTGGCTCCCACATCTTTCTTCTTTAAAATACCTGGACCTGAGTTGGGTCGGTATGATTAAGGCTTCTGATTGGTTGGAAACAATAAACAAGCTCCCCAAATTAAGAAACTTAACCTTGAGATTCTGTAGTCTTCCTCCTCCAACTCTTTCCACTCTTTCTCACATAAATTCTTCCAATTCTCTTGTTAGTGTTGATTTGTCTGGAAATCCTGATGTCATTTCTTCAATATTCAAATGGTTGTGCAATTTCAATACCACCCTTGTTCATCTTGACCTCTCTTCCAACCAACTAAGTGGTTTGATTCCGGATGCTTTTGCAAACATGAGCTCACTTGCATATCTTGACCTCGCTTCCAACCAATTAAGTGATTTGTTTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTCCGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTCCGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTCAGTGGTTTGATTCCCGATGTTTTCAAAAACATTGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGATTCACGATGCTTTCGCAAATATGAGTTCACTTGAAAATCTTGACTTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGCAAACATGAGCTCACTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCCCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCAATGCTTTCTCAAACATGAGCTCGCTTGCATATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCCTTTGCAAACATGAGCTCACTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGGGCTCACTTGCATATCTCAGTTTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGAGCTCACTTGAACATCTTGACCTCTCTTCCAACCAATTAAGTGGCTTGATTCCCGATGCTTTCAGAAACATGGGCTCACTTGCATCTCTTAGTCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTCGCAAACATGAGGTCACTTGTAGAGCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGAATCCTGATGTTTTTAGAAACATGGACTCCCTTGTAAATCTTGACCTCTATTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCACTTGCACGTCTTTACCTCTCTTCCAACCAATTAAGTGGTTTTATTCCCAATGCTTTCAGAAACATGAGCTCACTTGAATATCTTGCCCTGTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCAGAAACATGGGCTCACTTTCATATCTTAACCTCTCTTCCAACAAATTAAGTGGTTTGATTCACGATGTTTTTGCAAACATGAGCTCACTTGCACGTCTTGACATCTCTTATAACCCATTCGGAGGAGGGATCCCAGCCTCCATTGGCCAGTTATGCAGTTTGCGACATGTGTCAGTTTTAGGTTGTAATCTGACAAGTGGACAACTTTCTGAGTTTGTTCAAGGATGTTCAGCATGTTTTCAAAATTCATTACAGAGTTTTGATCTTTCCAATAATCATCTTGCTGGGTCACTTCCTAATCTTACAAGCGTTTCATCATTGGAGGTATTAACTCTCTCCAAAAATAAGTTGAGTGTTCTGGATAGTATTGGAAATTTTTCTTCTCTGAAACAATTATATGTTGATCAAAATCAATTACAATGGATGATACCGGAAAGTATTGGGAAACTCTCCGGTTTGTATGTCTTGGATCTCTCTGGAAATCTTCTGAGCGGAAGAATTCCAGAAGGTATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

974

Amino Acids

106.39

Weight (kDa)

5.54

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	41 - 81	7.4e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	117 - 336	6.8e-14	Leucine-rich repeat region
LRR_8	PF13855	277 - 338	1.3e-08	Leucine rich repeat
LRR_8	PF13855	303 - 362	1.1e-14	Leucine rich repeat
LRR_8	PF13855	327 - 386	2.5e-15	Leucine rich repeat
LRR_5	PF13306	368 - 494	8.6e-08	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	383 - 434	1.7e-11	Leucine rich repeat
LRR_8	PF13855	423 - 482	3.6e-11	Leucine rich repeat
LRR_5	PF13306	440 - 568	3e-12	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	447 - 506	1.7e-13	Leucine rich repeat
LRR_8	PF13855	471 - 530	7.4e-15	Leucine rich repeat
LRR_5	PF13306	488 - 616	1.9e-12	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	495 - 554	7.2e-15	Leucine rich repeat
LRR_8	PF13855	519 - 578	4.8e-15	Leucine rich repeat
LRR_5	PF13306	536 - 664	6.3e-11	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	544 - 602	1.4e-15	Leucine rich repeat
LRR_8	PF13855	572 - 626	4.9e-14	Leucine rich repeat
LRR_5	PF13306	583 - 712	1.7e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	591 - 650	5.6e-14	Leucine rich repeat
LRR_8	PF13855	615 - 674	9.1e-15	Leucine rich repeat
LRR_5	PF13306	632 - 760	2.4e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	646 - 698	1.2e-12	Leucine rich repeat
LRR_8	PF13855	669 - 722	1.5e-12	Leucine rich repeat
LRR_8	PF13855	687 - 746	1.6e-13	Leucine rich repeat
LRR_5	PF13306	703 - 832	6.3e-11	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	710 - 770	4.4e-14	Leucine rich repeat
LRR_8	PF13855	735 - 794	6.4e-13	Leucine rich repeat
LRR_8	PF13855	759 - 818	8.9e-15	Leucine rich repeat
LRR_8	PF13855	783 - 841	6.9e-14	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000028)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica	MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica	Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis	pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis	RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata	RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora	Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii	Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa	Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha	Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana	Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2517
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	2898
AccIII	TCCGGA	4 cut(s)	493, 955, 1099, 1243
AciI	CCGC	1 cut(s)	2898
AclWI	GGATC	3 cut(s)	2530, 2543, 2883
AcoI	YGGCCR	1 cut(s)	2551
AcsI	RAATTY	7 cut(s)	414, 489, 544, 817, 2650, 2779, 2904
AdeI	CACNNNGTG	1 cut(s)	305
AfeI	AGCGCT	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	121, 694, 2528
AflIII	ACRYGT	1 cut(s)	2572
AjiI	CACGTC	2 cut(s)	2285, 2501
AjnI	CCWGG	1 cut(s)	681
Alw26I	GTCTC	5 cut(s)	147, 1577, 1649, 1865, 2081
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	2530, 2543, 2883
Ama87I	CYCGRG	1 cut(s)	611
Aor13HI	TCCGGA	4 cut(s)	493, 955, 1099, 1243
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	3 cut(s)	253, 472, 2551
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	7 cut(s)	414, 489, 544, 817, 2650, 2779, 2904
ArsI	GACNNNNNNTTYG	2 cut(s)	2114, 2146
Asp700I	GAANNNNTTC	3 cut(s)	1610, 2258, 2782
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	253, 382, 685
AsuHPI	GGTGA	4 cut(s)	236, 301, 317, 569
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	382, 685
BaeGI	GKGCMC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	2553
BamHI	GGATCC	1 cut(s)	2535
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	773, 2361
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	154, 216
BcgI	CGANNNNNNTGC	2 cut(s)	2459, 2493
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	2809
BcoDI	GTCTC	5 cut(s)	147, 1577, 1649, 1865, 2081
BfaI	CTAG	2 cut(s)	302, 455
BfmI	CTRYAG	1 cut(s)	775
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	2 cut(s)	457, 532
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	2 cut(s)	382, 685
BmeT110I	CYCGRG	1 cut(s)	611
BmgBI	CACGTC	2 cut(s)	2285, 2501
BmgT120I	GGNCC	3 cut(s)	253, 382, 685
BmiI	GGNNCC	4 cut(s)	70, 113, 656, 2537
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	9 cut(s)	949, 1093, 1237, 1381, 1885, 1957, 2029, 2075, 2389
BmuI	ACTGGG	1 cut(s)	489
BoxI	GACNNNNGTC	2 cut(s)	387, 2575
BpiI	GAAGAC	2 cut(s)	773, 2361
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	137, 787
BsaBI	GATNNNNATC	1 cut(s)	2814
BsaI	GGTCTC	1 cut(s)	147
BsaWI	WCCGGW	6 cut(s)	493, 955, 1099, 1243, 2836, 2858
BsaXI	ACNNNNNCTCC	4 cut(s)	1610, 1640, 2186, 2216
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 694, 2528
Bse1I	ACTGG	3 cut(s)	288, 484, 2554
Bse8I	GATNNNNATC	1 cut(s)	2814
BseAI	TCCGGA	4 cut(s)	493, 955, 1099, 1243
BseBI	CCWGG	1 cut(s)	683
BseGI	GGATG	6 cut(s)	169, 964, 1108, 1252, 2636, 2835
BseJI	GATNNNNATC	1 cut(s)	2814
BseLI	CCNNNNNNNGG	3 cut(s)	121, 694, 2528
BseNI	ACTGG	3 cut(s)	288, 484, 2554
BseRI	GAGGAG	2 cut(s)	777, 2544
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	2 cut(s)	2539, 2690
BshFI	GGCC	3 cut(s)	255, 474, 2553
BshNI	GGYRCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	6 cut(s)	494, 956, 1100, 1244, 2837, 2859
BslI	CCNNNNNNNGG	3 cut(s)	121, 694, 2528
BsmAI	GTCTC	5 cut(s)	147, 1577, 1649, 1865, 2081
BsmI	GAATGC	2 cut(s)	1612, 2260
BsnI	GGCC	3 cut(s)	255, 474, 2553
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	611
Bsp13I	TCCGGA	4 cut(s)	493, 955, 1099, 1243
Bsp143I	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
BspACI	CCGC	1 cut(s)	2898
BspANI	GGCC	3 cut(s)	255, 474, 2553
BspEI	TCCGGA	4 cut(s)	493, 955, 1099, 1243
BspLI	GGNNCC	4 cut(s)	70, 113, 656, 2537
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	2530, 2543, 2883
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	147
BsrBI	CCGCTC	1 cut(s)	2898
BsrI	ACTGG	3 cut(s)	288, 484, 2554
BssMI	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	2 cut(s)	68, 215
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	1484, 1700, 1704, 1772
BstF5I	GGATG	6 cut(s)	169, 964, 1108, 1252, 2636, 2835
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	8 cut(s)	244, 294, 460, 535, 2538, 2671, 2812, 2878
BstMAI	GTCTC	5 cut(s)	147, 1577, 1649, 1865, 2081
BstMBI	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 140, 2559
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	3 cut(s)	29, 2576, 2643
BstPAI	GACNNNNGTC	2 cut(s)	387, 2575
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	773, 2361
BstX2I	RGATCY	4 cut(s)	457, 532, 2535, 2875
BstYI	RGATCY	4 cut(s)	457, 532, 2535, 2875
BsuRI	GGCC	3 cut(s)	255, 474, 2553
BtrI	CACGTC	2 cut(s)	2285, 2501
BtsCI	GGATG	6 cut(s)	169, 964, 1108, 1252, 2636, 2835
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	235, 477, 1309
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	1484, 1700, 1704, 1772
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	3 cut(s)	253, 382, 685
CspCI	CAANNNNNGTGG	2 cut(s)	2437, 2472
DpnI	GATC	8 cut(s)	243, 293, 459, 534, 2537, 2670, 2811, 2877
DpnII	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
DraI	TTTAAA	2 cut(s)	331, 675
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	2551
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	382, 685
Eco47III	AGCGCT	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	2904
EcoRII	CCWGG	1 cut(s)	681
FbaI	TGATCA	1 cut(s)	2809
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	6 cut(s)	176, 971, 1115, 1259, 2643, 2842
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	2 cut(s)	302, 455
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	365
GsaI	CCCAGC	2 cut(s)	2543, 2694
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	255, 474, 2553
HapII	CCGG	6 cut(s)	494, 956, 1100, 1244, 2837, 2859
HhaI	GCGC	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HpaII	CCGG	6 cut(s)	494, 956, 1100, 1244, 2837, 2859
HphI	GGTGA	4 cut(s)	236, 301, 317, 569
Hpy166II	GTNNAC	4 cut(s)	134, 235, 1412, 2606
Hpy8I	GTNNAC	4 cut(s)	134, 235, 1412, 2606
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	6, 548, 2906
HpyCH4III	ACNGT	2 cut(s)	68, 215
HpyCH4IV	ACGT	2 cut(s)	2284, 2500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 140, 2559
HpySE526I	ACGT	2 cut(s)	2284, 2500
HspAI	GCGC	1 cut(s)	422
Kpn2I	TCCGGA	4 cut(s)	493, 955, 1099, 1243
Ksp22I	TGATCA	1 cut(s)	2809
Kzo9I	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
LmnI	GCTCC	5 cut(s)	483, 496, 660, 747, 1631
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	9 cut(s)	949, 1093, 1237, 1381, 1885, 1957, 2029, 2075, 2389
MaeI	CTAG	2 cut(s)	302, 455
MaeII	ACGT	2 cut(s)	2284, 2500
MaeIII	GTNAC	4 cut(s)	259, 389, 2130, 2694
MalI	GATC	8 cut(s)	243, 293, 459, 534, 2537, 2670, 2811, 2877
MbiI	CCGCTC	1 cut(s)	2898
MboI	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	4 cut(s)	457, 532, 2535, 2875
MlsI	TGGCCA	1 cut(s)	2553
MluNI	TGGCCA	1 cut(s)	2553
MlyI	GAGTC	9 cut(s)	240, 1450, 1522, 1666, 1738, 1810, 2098, 2195, 2386
Mox20I	TGGCCA	1 cut(s)	2553
MroI	TCCGGA	4 cut(s)	493, 955, 1099, 1243
MroXI	GAANNNNTTC	3 cut(s)	1610, 2258, 2782
MscI	TGGCCA	1 cut(s)	2553
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	2553
MspI	CCGG	6 cut(s)	494, 956, 1100, 1244, 2837, 2859
MspR9I	CCNGG	1 cut(s)	683
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	1612, 2260
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	3 cut(s)	55, 140, 2559
NdeII	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
NlaIV	GGNNCC	4 cut(s)	70, 113, 656, 2537
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	3 cut(s)	389, 2130, 2694
NspI	RCATGY	3 cut(s)	29, 2576, 2643
PciI	ACATGT	1 cut(s)	2572
PctI	GAATGC	2 cut(s)	1612, 2260
PdmI	GAANNNNTTC	3 cut(s)	1610, 2258, 2782
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	9 cut(s)	239, 1450, 1522, 1666, 1738, 1810, 2098, 2195, 2386
PpsI	GAGTC	9 cut(s)	239, 1450, 1522, 1666, 1738, 1810, 2098, 2195, 2386
PscI	ACATGT	1 cut(s)	2572
PshAI	GACNNNNGTC	2 cut(s)	387, 2575
PsiI	TTATAA	1 cut(s)	2517
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	2 cut(s)	2539, 2690
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	4 cut(s)	70, 113, 656, 2537
PspPI	GGNCC	3 cut(s)	253, 382, 685
PsuI	RGATCY	4 cut(s)	457, 532, 2535, 2875
RseI	CAYNNNNRTG	1 cut(s)	468
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	8 cut(s)	241, 291, 457, 532, 2535, 2668, 2809, 2875
Sau96I	GGNCC	3 cut(s)	253, 382, 685
SchI	GAGTC	9 cut(s)	240, 1450, 1522, 1666, 1738, 1810, 2098, 2195, 2386
ScrFI	CCNGG	1 cut(s)	683
SfaNI	GCATC	9 cut(s)	949, 1093, 1237, 1381, 1885, 1957, 2029, 2075, 2389
SfcI	CTRYAG	1 cut(s)	775
SinI	GGWCC	2 cut(s)	382, 685
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	116, 766
SmoI	CTYRAG	2 cut(s)	116, 766
SsiI	CCGC	1 cut(s)	2898
SspI	AATATT	3 cut(s)	326, 377, 879
SspMI	CTAG	2 cut(s)	302, 455
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	68, 215
TaiI	ACGT	2 cut(s)	2287, 2503
TscAI	CASTG	3 cut(s)	242, 484, 1309
TseFI	GTSAC	3 cut(s)	389, 2130, 2694
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	3 cut(s)	389, 2130, 2694
TspDTI	ATGAA	5 cut(s)	180, 905, 2415, 2643, 2709
TspRI	CASTG	3 cut(s)	242, 484, 1309
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	382, 685
XapI	RAATTY	7 cut(s)	414, 489, 544, 817, 2650, 2779, 2904
XceI	RCATGY	3 cut(s)	29, 2576, 2643
XmnI	GAANNNNTTC	3 cut(s)	1610, 2258, 2782
XspI	CTAG	2 cut(s)	302, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.