Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000028

Physical Location & Seq

Genomic Coordinates Reverse (-)

47167263 .. 47171063

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3801 bp

ATGGAGTTGGGAAGGTGGCTCAGACTTGCTTATGCAATATCAATTGTGCTTCTTCTGCATATCAACGCTTCCTTATCCCTCGGCCACCACCATGCTAACGTGACGGCAAGGTGCCTAGAGAGGGAGAGGGATGCACTGCTTGCTATCAAAGGAGACCTGGTGGATGAATACAACCTGCTCTCTTCGTGGGGAAGCGAAGCCAAAAAGCGAGACTGTTGCGGATGGGAAAGAGTCCACTGCGATCACCAGACCGGCCATGTTACTCAACTTCATCTGAATGGAGAATGGGTGATCTCTTTGCCAGGTGAGTATATACAGAAAAATTTGCAAGGTGAAATTAGTCCTAAAATCATTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTCAAAATTTCTTCACTGCCAGCCAAATTCCAGCACTCATTTGTTCTCTATCCAATTTAAGACACCTAGATTTGAGTTTGAATCGCCTCACCGGGAGCAAAATTCCAAAGCTCATTGGTAATCTGACCAATTTAAGATATCTAAATCTGTCTTCAAATTTGCTAGGTGATGAAACTCCATATCATCAGCTTAGAAACCTTACTCACTTGCAGTATCTCAATCTCGGGTATAATGACATCACTCATGGTGTAGAAAACCTCCATTGGCTCCCACATCTTTCATCTTTAAAATACCTGGACCTGAGTTCTACCAATCTAATTAAGGTTTCTGATTGGCTGGAAACAATAAACAAGCTCCCTGACCTAAGAAACTTGACCTTAATAGGATGTGACCTTCCACCTCCTATTCTTTCCACTATTTCTCACATAAATTCTTCCAATTCTCTTGTAAGTGTTGAATTGTCTGAAAATCCTGCTGTCAGTTCTTCAATATTCAAATGGTTGTGCAACTACAATACCACCCTTTTTCATATTGACCTCTCTTCCACCCAATTAAGTGGTTTGATTCCCGATGCTTTCAAAAATATGAATTCACTTGCATATCTTGGCCTCCGTGATATCCAATTAAGTGATTTGACTGCTAATGCTTTTACAGACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCGCTTGCAACTCTTGACCTCTCTTCCAACCAATTAGGTGATTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCTTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAATGGTTTGATTCCCGATGATTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCTTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGATTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTCTAGCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCATTTGCAAAAATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCACTTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTCTAGCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCATTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCACTTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAACTCTTGTCCTCTCTTACAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCATCTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCATCTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCATCTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCTCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTCCAATCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACACGAGTTCACTTAAATATCTTTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCACTTAAATATCTTTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCACTTAAATATCTGTACCTCTTTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGAAGCTTTTGCAAACATGAGATCACTTAAATATCTTTACCTCTCTTCCAACCAATTAGGTGATTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCAAATCTTGACCTTTCTAATAACCCACTTGAAGGAGGAATCCAGCATCCATTGGCCAGTTATGTAATTTGCGAACCTTGGCCATTTCAGACAGTAGGTTACATGGACAGTTCTCTGAATTTGTTCAAACATTGTCTATATGTACTCAAAACTCATTGGAGAGATTGCATCTCTCTCATAATGATCTTGCTGGGTCATTGCCTAATCTTGCAAACTTCCAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1266

Amino Acids

137.55

Weight (kDa)

4.66

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 81	9.3e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	112 - 259	4.3e-11	Leucine-rich repeat region
LRR_5	PF13306	302 - 423	7e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	304 - 361	5.2e-09	Leucine rich repeat
LRR_14	PF23598	320 - 527	1.6e-09	Leucine-rich repeat region
LRR_8	PF13855	327 - 385	6.8e-12	Leucine rich repeat
LRR_8	PF13855	350 - 409	6e-14	Leucine rich repeat
LRR_8	PF13855	375 - 433	2.4e-12	Leucine rich repeat
LRR_5	PF13306	391 - 503	9.8e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	398 - 457	5.5e-13	Leucine rich repeat
LRR_8	PF13855	445 - 505	5.8e-15	Leucine rich repeat
LRR_5	PF13306	487 - 596	2.2e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	495 - 553	9.4e-13	Leucine rich repeat
LRR_8	PF13855	518 - 577	1e-14	Leucine rich repeat
LRR_8	PF13855	542 - 601	1e-14	Leucine rich repeat
LRR_8	PF13855	566 - 625	8.7e-14	Leucine rich repeat
LRR_5	PF13306	585 - 711	5.1e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	589 - 649	7.9e-15	Leucine rich repeat
LRR_8	PF13855	613 - 673	1e-15	Leucine rich repeat
LRR_8	PF13855	637 - 697	1.6e-15	Leucine rich repeat
LRR_8	PF13855	662 - 721	4e-15	Leucine rich repeat
LRR_5	PF13306	679 - 789	2.6e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	685 - 745	9e-16	Leucine rich repeat
LRR_8	PF13855	710 - 769	8.1e-16	Leucine rich repeat
LRR_5	PF13306	727 - 854	6e-11	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	734 - 793	1.9e-14	Leucine rich repeat
LRR_8	PF13855	758 - 817	4.3e-15	Leucine rich repeat
LRR_5	PF13306	775 - 885	2.4e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	781 - 841	1.2e-15	Leucine rich repeat
LRR_8	PF13855	806 - 865	4.2e-15	Leucine rich repeat
LRR_5	PF13306	823 - 935	1.4e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	829 - 889	9.1e-16	Leucine rich repeat
LRR_8	PF13855	854 - 913	1.9e-15	Leucine rich repeat
LRR_5	PF13306	871 - 983	9.8e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	902 - 961	1.4e-15	Leucine rich repeat
LRR_8	PF13855	950 - 1009	1.8e-15	Leucine rich repeat
LRR_5	PF13306	991 - 1100	1.7e-08	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	999 - 1057	5.3e-12	Leucine rich repeat
LRR_8	PF13855	1046 - 1105	1.6e-14	Leucine rich repeat
LRR_5	PF13306	1087 - 1199	6.4e-09	BspA type Leucine rich repeat region (6 copies)
LRR_14	PF23598	1089 - 1194	3.3e-07	Leucine-rich repeat region
LRR_8	PF13855	1102 - 1153	2.4e-13	Leucine rich repeat
LRR_8	PF13855	1148 - 1201	1e-11	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000028)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica	MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica	Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis	pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis	RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata	RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora	Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii	Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa	Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha	Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana	Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	1 cut(s)	219
AcoI	YGGCCR	4 cut(s)	82, 253, 3627, 3653
AcsI	RAATTY	8 cut(s)	322, 391, 411, 486, 541, 814, 973, 3691
AfaI	GTAC	4 cut(s)	1856, 2288, 3296, 3717
AfiI	CCNNNNNNNGG	2 cut(s)	121, 3605
AflII	CTTAAG	2 cut(s)	2089, 2521
AjnI	CCWGG	3 cut(s)	156, 301, 678
AleI	CACNNNNGTG	2 cut(s)	2091, 2523
Alw26I	GTCTC	2 cut(s)	147, 204
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	5 cut(s)	82, 253, 991, 3627, 3653
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	8 cut(s)	322, 391, 411, 486, 541, 814, 973, 3691
Asp700I	GAANNNNTTC	3 cut(s)	3191, 3263, 3695
AspS9I	GGNCC	2 cut(s)	379, 682
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	8 cut(s)	236, 301, 317, 344, 466, 563, 1169, 3473
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	379, 682
BalI	TGGCCA	2 cut(s)	3629, 3655
BanI	GGYRCC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	3130
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	3 cut(s)	158, 303, 680
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	2 cut(s)	147, 204
BfaI	CTAG	5 cut(s)	116, 452, 548, 1863, 2295
BfrI	CTTAAG	2 cut(s)	2089, 2521
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	4 cut(s)	158, 303, 478, 680
Bme18I	GGWCC	2 cut(s)	379, 682
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	379, 682
BmiI	GGNNCC	2 cut(s)	113, 653
BmrFI	CCNGG	4 cut(s)	158, 303, 478, 680
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	79, 3650
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 3605
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	3630
Bse3DI	GCAATG	1 cut(s)	3769
BseBI	CCWGG	3 cut(s)	158, 303, 680
BseDI	CCNNGG	2 cut(s)	79, 3650
BseGI	GGATG	5 cut(s)	136, 169, 227, 776, 3619
BseLI	CCNNNNNNNGG	2 cut(s)	121, 3605
BseMI	GCAATG	1 cut(s)	3769
BseMII	CTCAG	3 cut(s)	34, 397, 677
BseNI	ACTGG	1 cut(s)	3630
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	3763
BshFI	GGCC	5 cut(s)	84, 255, 993, 3629, 3655
BshNI	GGYRCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	252, 477
BslI	CCNNNNNNNGG	2 cut(s)	121, 3605
BsmAI	GTCTC	2 cut(s)	147, 204
BsmI	GAATGC	2 cut(s)	3193, 3265
BsnI	GGCC	5 cut(s)	84, 255, 993, 3629, 3655
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	608
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	5 cut(s)	84, 255, 993, 3629, 3655
BspCNI	CTCAG	3 cut(s)	33, 396, 678
BspLI	GGNNCC	2 cut(s)	113, 653
BspMI	ACCTGC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	111
BspTI	CTTAAG	2 cut(s)	2089, 2521
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	3769
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	3630
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	79, 3650
BssSI	CACGAG	1 cut(s)	3130
BssT1I	CCWWGG	1 cut(s)	3650
Bst2BI	CACGAG	1 cut(s)	3130
Bst2UI	CCWGG	3 cut(s)	158, 303, 680
Bst4CI	ACNGT	3 cut(s)	215, 3667, 3683
BstAFI	CTTAAG	2 cut(s)	2089, 2521
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	141, 406, 1121, 1125
BstDEI	CTNAG	5 cut(s)	20, 383, 575, 686, 749
BstF5I	GGATG	5 cut(s)	136, 169, 227, 776, 3619
BstMAI	GTCTC	2 cut(s)	147, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 140
BstNI	CCWGG	3 cut(s)	158, 303, 680
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	4 cut(s)	156, 301, 476, 678
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	528
BsuRI	GGCC	5 cut(s)	84, 255, 993, 3629, 3655
BtsCI	GGATG	5 cut(s)	136, 169, 227, 776, 3619
BtsI	GCAGTG	3 cut(s)	134, 235, 399
BtsIMutI	CAGTG	3 cut(s)	134, 235, 399
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	141, 406, 1121, 1125
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	379, 682
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	4 cut(s)	1855, 2287, 3295, 3716
CviQI	GTAC	4 cut(s)	1855, 2287, 3295, 3716
DdeI	CTNAG	5 cut(s)	20, 383, 575, 686, 749
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	4 cut(s)	82, 253, 3627, 3653
Eco130I	CCWWGG	1 cut(s)	3650
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	2 cut(s)	524, 1003
Eco47I	GGWCC	2 cut(s)	379, 682
Eco88I	CYCGRG	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	3 cut(s)	156, 301, 678
EcoRV	GATATC	2 cut(s)	524, 1003
EcoT14I	CCWWGG	1 cut(s)	3650
EcoT22I	ATGCAT	2 cut(s)	1969, 2401
ErhI	CCWWGG	1 cut(s)	3650
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	5 cut(s)	143, 176, 234, 783, 3606
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	5 cut(s)	116, 452, 548, 1863, 2295
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	3767
HaeIII	GGCC	5 cut(s)	84, 255, 993, 3629, 3655
HapII	CCGG	2 cut(s)	252, 477
HindIII	AAGCTT	1 cut(s)	3405
HpaII	CCGG	2 cut(s)	252, 477
HphI	GGTGA	8 cut(s)	236, 301, 317, 344, 466, 563, 1169, 3473
Hpy166II	GTNNAC	2 cut(s)	235, 3137
Hpy188I	TCNGA	9 cut(s)	23, 276, 510, 715, 850, 3186, 3258, 3663, 3690
Hpy8I	GTNNAC	2 cut(s)	235, 3137
HpyAV	CCTTC	3 cut(s)	6, 788, 3599
HpyCH4III	ACNGT	3 cut(s)	215, 3667, 3683
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 140
HpyF3I	CTNAG	5 cut(s)	20, 383, 575, 686, 749
HpySE526I	ACGT	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	480, 657, 744
Lsp1109I	GCAGC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	5 cut(s)	116, 452, 548, 1863, 2295
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	6 cut(s)	100, 259, 773, 3070, 3358, 3671
MfeI	CAATTG	1 cut(s)	42
MlsI	TGGCCA	2 cut(s)	3629, 3655
MluNI	TGGCCA	2 cut(s)	3629, 3655
MlyI	GAGTC	1 cut(s)	240
Mox20I	TGGCCA	2 cut(s)	3629, 3655
Mph1103I	ATGCAT	2 cut(s)	1969, 2401
MroXI	GAANNNNTTC	3 cut(s)	3191, 3263, 3695
MscI	TGGCCA	2 cut(s)	3629, 3655
MslI	CAYNNNNRTG	4 cut(s)	90, 276, 2091, 2523
Msp20I	TGGCCA	2 cut(s)	3629, 3655
MspCI	CTTAAG	2 cut(s)	2089, 2521
MspI	CCGG	2 cut(s)	252, 477
MspR9I	CCNGG	4 cut(s)	158, 303, 478, 680
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	3193, 3265
MvaI	CCWGG	3 cut(s)	158, 303, 680
MwoI	GCNNNNNNNGC	2 cut(s)	55, 140
NciI	CCSGG	1 cut(s)	478
NlaIV	GGNNCC	2 cut(s)	113, 653
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	100, 773
NsiI	ATGCAT	2 cut(s)	1969, 2401
OliI	CACNNNNGTG	2 cut(s)	2091, 2523
PctI	GAATGC	2 cut(s)	3193, 3265
PdmI	GAANNNNTTC	3 cut(s)	3191, 3263, 3695
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	156, 301, 678
PspFI	CCCAGC	1 cut(s)	3763
PspGI	CCWGG	3 cut(s)	156, 301, 678
PspN4I	GGNNCC	2 cut(s)	113, 653
PspPI	GGNCC	2 cut(s)	379, 682
RsaI	GTAC	4 cut(s)	1856, 2288, 3296, 3717
RsaNI	GTAC	4 cut(s)	1855, 2287, 3295, 3716
RseI	CAYNNNNRTG	4 cut(s)	90, 276, 2091, 2523
SatI	GCNGC	1 cut(s)	362
Sau96I	GGNCC	2 cut(s)	379, 682
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	4 cut(s)	158, 303, 478, 680
SexAI	ACCWGGT	1 cut(s)	156
SinI	GGWCC	2 cut(s)	379, 682
SmiMI	CAYNNNNRTG	4 cut(s)	90, 276, 2091, 2523
SmlI	CTYRAG	2 cut(s)	2089, 2521
SmoI	CTYRAG	2 cut(s)	2089, 2521
SsiI	CCGC	1 cut(s)	219
SspI	AATATT	2 cut(s)	374, 876
SspMI	CTAG	5 cut(s)	116, 452, 548, 1863, 2295
StyD4I	CCNGG	4 cut(s)	156, 301, 476, 678
StyI	CCWWGG	1 cut(s)	3650
TaaI	ACNGT	3 cut(s)	215, 3667, 3683
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	3042
TatI	WGTACW	1 cut(s)	3715
TscAI	CASTG	3 cut(s)	141, 242, 406
TseFI	GTSAC	2 cut(s)	100, 773
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	100, 773
TspDTI	ATGAA	6 cut(s)	180, 260, 570, 654, 902, 986
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	3 cut(s)	141, 242, 406
Vha464I	CTTAAG	2 cut(s)	2089, 2521
VpaK11BI	GGWCC	2 cut(s)	379, 682
XapI	RAATTY	8 cut(s)	322, 391, 411, 486, 541, 814, 973, 3691
XmnI	GAANNNNTTC	3 cut(s)	3191, 3263, 3695
XspI	CTAG	5 cut(s)	116, 452, 548, 1863, 2295
Zsp2I	ATGCAT	2 cut(s)	1969, 2401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.