Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000028

Physical Location & Seq

Genomic Coordinates Reverse (-)

49744884 .. 49756712

Gene Structure 11829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3942 bp

ATGGAGTTGGGAAGGTGGCTCAGACATGCTTTTGCAATATCAATTGTGCTTCTTCTGCATATCAACGGTTCCTTATCACTCGGCAACCACCATGCTAACTTGACGACGAGGTGCCTTGAGAGGGAGAGGGGTGCACTCCTTGCTATCAAAAGAGACCTGATGGATGAATACAACCTGCTCTCTTCTTGGGGAAGCGAAGCCAAAAAGCAAGACTGTTGCCGATGGGAAAGAGTCCACTGCGATCACCAGACGGGCCATGTTACTCAACTTCATCTTGGAGGACTAGAGGTGATCTCTTCACTAGGTGAGTTTAAGACTTACAAATATTTTAAAGGAATAGTTAGTCCTAAACTCATTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTCACAATTTCTTCAATGCCAACCAAATTCCAGCGCTCATTTTTTCTTTGTTCAATTTAAGACACCTAGATCTCCATTACAATGGCCTCACTGGGAGCAAAATTCCGGAGCTCATTAGTAATCTGACCAATTTAAGATATTTAGATCTCTCTGAGAATTTCTTTGAAGAAAACTTCCATTGGCTCCCACATCTTTCTTCTTTAAAATACCTGGACCTGAGTTGGGTCGATATAATTAAGGCTTCTGATTGGTTGGAAACAATAAACAAGCTCCCCAATTTAAGAAACTTAACCTTGAGATTCTGTAGTCTTCCTCCTCCAACTCTTTCCACTCTTTCTCACATAAATTCTTCCAATTCTCTTGTTAGTGTTGATTTGTCTGGAAATCCTGATGTCATTTCTTCAATATTCAAATGGTTGTGCAATTTCAATACCACCCTTGTTCATCTTGACCTCTCTTCCAACCAACTAAGTGGTTTGATTCCGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCGCTTCCAACCAATTAAGGGATTTGTTTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTCCGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTCCGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTCAGTGGTTTGATTCCCGATGTTTTCAGAAACATTGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGATTCACGATGCTTTCGCAAATATGAGTTCACTTGAAAATCTTGACTTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGCAAACATGAGCTCACTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCCCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCAATGCTTTAGCAAACATGAGCTCGCTTGCATATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCAATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCCTTTGCAAACATGAGCTCACTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGAGCTCACTTGGATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGGGCTCACTTGCATATCTCAGTTTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGAGCTCACTTGAACATCTTGACCTCTCTTCCAACCAATTAAGTGGCTTGATTCCCGATGCTTTCAGAAACATGGGCTCACTCGCATCTCTTAGTCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTCGCAAACATGAGGTCACTTGTAGAGCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGAATCCTGATGTTTTTAGAAACATGGACTCCCTTGTAAATCTTGACCTCTATTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGCTCACTTGCACGTCTTTACCTCTCTTCCAACCAATTAAGTGGTTTTATTCCCAATGCTTTCAGAAACATGAGCTCACTTGAATATCTTGCCCTGTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCAGAAACATGGGCTCACTTTCATATCTTAACCTCTCTTCCAAAAAATTAAGTGGTTTGATTCACGATGTTTTTGCAAACATGAGCTCACTTGCACGTCTTGACATCTCTTATAACCCATTCGGAGGAGGGATCCCAGCCTCCATTGGCCAGTTATGCAGTTTGCGACATGTGTCAATTTTAGGTTGTAATCTGACAAGTGGACAACTTTCTGAGTTTGTTCAAGGATGTTCAGTATGTTTTCAAAACTCATTACAGAGTTTTGATCTTTCCAATAATCATCTTGCTGGGTCACTTCCTAATCTTACAAGCATTTCATCATTGGAGGTATTAACTCTCTCCAAAAATAAGTTGAGTGTTCTGGATAGTATTGGAAATTTTTCTTCTCTGAAACAATTATATGTTGATCAAAATCAATTACAATGGATGATACCGGAAAGTATTGGGAAACTCTCCGGTTTGTATGTCTTGGATCTCTCTGGAAATCTTCTGAGCGGAAGAATTCTAGAAGGTATTGGGCAATTCTCATCATTGAAACGTTTAGTTCTTTCCGGAAATCAATTAAGCAGAAGCATACCTGAAACTATTGGGCAACTATCATCTTTGTGGAGTTTAGATCTCTCTAGAAATCTGTTAAGCGGAAGAATACCGCAAAGTATTGGACAGATGTCTGGGTTGGGCTTTATAAATCTTAGTATGAATCGTTTGGAAGGGGAGATTTCAGAAACCCATTTCTCAAAACTCTTTAATCTAGATGAGTTGGATTTATCCTATAACCCATTATTAGAATTCAATGTCACTTCTGATTGGGTTTTTCCTTCTCAATTGTATTATCTAAGCTTGAGGTCTTGTATGGTGGGGCTGGATTTCCCAAAATGGCTTCGAACCCAAAAAGATCTTTCCTACCTTGACATGTCTGATGGTGACATTTCAGATGTCCTTCCAAGTTGGTTCTGGGGTCTATTAGGTGATCGTTCGACTATAGATCTGTCTAACAATCAAATTAGAGGAACATTAGGGAGTTCAGAGGCTGTATCAGTTAACGGAGTTGAAGTTCGGTTTAGTTCCAACCAGTTGGAAGGTCCAGTGCCCCCATTTCTATCAAATGCGAAATATTTGGATCTCTCTGATAATATATTTTTAGAGATGACTTCCTTCTTGTGTTCATCGAATGTTAAAATTTCCAGATTTCTTGATCTCTCCAGTAATCATATTTCTGGAGAACTTCCAGATTGCTGGAGACATTGGGTCAATCTAGATCTTCTCGATTTGAGTAACAATTATTTTTCTGGTAAAATCCCACCCAATATAGGATGTTTACTTAGAATCAAAACATTGAAATTAAGGAGAAACAGACTTGTGGGAGAATTGCCTTCATCCTTGAAGAGTTGTACAAGCTTAAATGTTATTGATCTTGGGGACAATAAGCTTTCAAGTTCAGTGCCTGAATGGTTAGGGAAAGGGCAGCAGCCTGAAGATGAGATGCAATGTGCCATATTAGGGAAGTTACTTGAGCTTACCATGTTTCCAACATCAATGAATTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1313

Amino Acids

144.37

Weight (kDa)

5.34

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	41 - 81	1e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	117 - 231	4.8e-09	Leucine-rich repeat region
LRR_8	PF13855	249 - 310	3.1e-08	Leucine rich repeat
LRR_8	PF13855	299 - 358	4.3e-15	Leucine rich repeat
LRR_5	PF13306	340 - 466	1.7e-07	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	351 - 406	1.3e-13	Leucine rich repeat
LRR_8	PF13855	395 - 454	8.4e-11	Leucine rich repeat
LRR_5	PF13306	412 - 539	9.1e-11	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	419 - 478	2.2e-13	Leucine rich repeat
LRR_8	PF13855	443 - 502	1e-14	Leucine rich repeat
LRR_5	PF13306	460 - 588	7.8e-11	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	468 - 526	2e-14	Leucine rich repeat
LRR_8	PF13855	491 - 550	5.1e-14	Leucine rich repeat
LRR_5	PF13306	508 - 630	9.8e-08	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	516 - 574	6.7e-14	Leucine rich repeat
LRR_8	PF13855	539 - 598	1.4e-15	Leucine rich repeat
LRR_8	PF13855	563 - 622	1.9e-15	Leucine rich repeat
LRR_14	PF23598	577 - 687	1.6e-06	Leucine-rich repeat region
LRR_5	PF13306	579 - 707	1.7e-09	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	591 - 646	1.7e-12	Leucine rich repeat
LRR_8	PF13855	615 - 670	5.1e-14	Leucine rich repeat
LRR_8	PF13855	636 - 694	3.3e-13	Leucine rich repeat
LRR_8	PF13855	659 - 718	1.6e-14	Leucine rich repeat
LRR_8	PF13855	683 - 742	2.3e-13	Leucine rich repeat
LRR_5	PF13306	699 - 828	1.1e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	706 - 766	6.3e-14	Leucine rich repeat
LRR_8	PF13855	731 - 790	8.6e-13	Leucine rich repeat
LRR_8	PF13855	755 - 812	5.1e-13	Leucine rich repeat
LRR_8	PF13855	779 - 837	8e-12	Leucine rich repeat
LRR_14	PF23598	894 - 1102	1.3e-14	Leucine-rich repeat region
LRR_8	PF13855	950 - 1009	1.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000028)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica	MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica	Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis	pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis	RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata	RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora	Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii	Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa	Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha	Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana	Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2505, 3077
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	2886
AccIII	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
AciI	CCGC	3 cut(s)	2886, 3030, 3041
AclI	AACGTT	1 cut(s)	2929
AclWI	GGATC	4 cut(s)	2518, 2531, 2871, 3519
AcoI	YGGCCR	1 cut(s)	2539
AcsI	RAATTY	8 cut(s)	414, 489, 544, 733, 2767, 2892, 3179, 3570
AcuI	CTGAAG	1 cut(s)	3885
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	3784
AfeI	AGCGCT	1 cut(s)	423
AfiI	CCNNNNNNNGG	6 cut(s)	121, 610, 931, 2516, 3701, 3891
AflIII	ACRYGT	2 cut(s)	2560, 3303
AhdI	GACNNNNNGTC	1 cut(s)	3638
AjiI	CACGTC	2 cut(s)	2273, 2489
AjnI	CCWGG	1 cut(s)	597
AloI	GAACNNNNNNTCC	2 cut(s)	3429, 3461
Alw26I	GTCTC	6 cut(s)	147, 1493, 1565, 1781, 2069, 3625
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	4 cut(s)	2518, 2531, 2871, 3519
AlwNI	CAGNNNCTG	2 cut(s)	3422, 3836
Aor13HI	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	3 cut(s)	253, 472, 2539
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	364, 3856, 3859
ApoI	RAATTY	8 cut(s)	414, 489, 544, 733, 2767, 2892, 3179, 3570
ArsI	GACNNNNNNTTYG	2 cut(s)	2102, 2134
Asp700I	GAANNNNTTC	3 cut(s)	1526, 2246, 2770
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	4 cut(s)	253, 382, 601, 3473
AsuHPI	GGTGA	5 cut(s)	236, 301, 317, 3326, 3371
AsuII	TTCGAA	1 cut(s)	3274
AvaII	GGWCC	3 cut(s)	382, 601, 3473
BaeGI	GKGCMC	2 cut(s)	136, 3483
BalI	TGGCCA	1 cut(s)	2541
BamHI	GGATCC	1 cut(s)	2523
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	689, 2349
BbvI	GCAGC	3 cut(s)	376, 3868, 3871
BccI	CCATC	3 cut(s)	154, 216, 3305
BcgI	CGANNNNNNTGC	2 cut(s)	2447, 2481
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	1 cut(s)	2797
BcoDI	GTCTC	6 cut(s)	147, 1493, 1565, 1781, 2069, 3625
BfaI	CTAG	7 cut(s)	284, 302, 455, 2897, 3015, 3143, 3647
BfmI	CTRYAG	2 cut(s)	691, 3372
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	6 cut(s)	457, 532, 3007, 3286, 3376, 3649
BisI	GCNGC	3 cut(s)	365, 3857, 3860
BlsI	GCNGC	3 cut(s)	366, 3858, 3861
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	3 cut(s)	382, 601, 3473
BmeRI	GACNNNNNGTC	1 cut(s)	3638
BmgBI	CACGTC	2 cut(s)	2273, 2489
BmgT120I	GGNCC	4 cut(s)	253, 382, 601, 3473
BmiI	GGNNCC	4 cut(s)	70, 113, 572, 2525
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	489
BoxI	GACNNNNGTC	3 cut(s)	387, 2563, 3058
BpiI	GAAGAC	2 cut(s)	689, 2349
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	3 cut(s)	3577, 3630, 3649
Bpu14I	TTCGAA	1 cut(s)	3274
BpuEI	CTTGAG	4 cut(s)	137, 703, 3253, 3923
BsaBI	GATNNNNATC	1 cut(s)	2802
BsaI	GGTCTC	1 cut(s)	147
BsaWI	WCCGGW	7 cut(s)	493, 871, 1015, 1159, 2824, 2846, 2942
BsaXI	ACNNNNNCTCC	6 cut(s)	1526, 1556, 2174, 2204, 3429, 3459
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 610, 931, 2516, 3701, 3891
Bse1I	ACTGG	5 cut(s)	484, 2542, 3463, 3476, 3594
Bse3DI	GCAATG	1 cut(s)	3884
Bse8I	GATNNNNATC	1 cut(s)	2802
BseAI	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
BseBI	CCWGG	1 cut(s)	599
BseGI	GGATG	8 cut(s)	169, 880, 1024, 1168, 2624, 2823, 3710, 3767
BseJI	GATNNNNATC	1 cut(s)	2802
BseLI	CCNNNNNNNGG	6 cut(s)	121, 610, 931, 2516, 3701, 3891
BseMI	GCAATG	1 cut(s)	3884
BseNI	ACTGG	5 cut(s)	484, 2542, 3463, 3476, 3594
BseRI	GAGGAG	2 cut(s)	693, 2532
BseSI	GKGCMC	2 cut(s)	136, 3483
BseXI	GCAGC	3 cut(s)	376, 3868, 3871
BseYI	CCCAGC	2 cut(s)	2527, 2678
BshFI	GGCC	3 cut(s)	255, 474, 2541
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	7 cut(s)	494, 872, 1016, 1160, 2825, 2847, 2943
BslFI	GGGAC	1 cut(s)	3824
BslI	CCNNNNNNNGG	6 cut(s)	121, 610, 931, 2516, 3701, 3891
BsmAI	GTCTC	6 cut(s)	147, 1493, 1565, 1781, 2069, 3625
BsmFI	GGGAC	1 cut(s)	3824
BsmI	GAATGC	2 cut(s)	1528, 2248
BsnI	GGCC	3 cut(s)	255, 474, 2541
Bso31I	GGTCTC	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	3274
Bsp13I	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
Bsp1407I	TGTACA	1 cut(s)	3782
BspACI	CCGC	3 cut(s)	2886, 3030, 3041
BspANI	GGCC	3 cut(s)	255, 474, 2541
BspEI	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
BspLI	GGNNCC	4 cut(s)	70, 113, 572, 2525
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	4 cut(s)	2518, 2531, 2871, 3519
BspT104I	TTCGAA	1 cut(s)	3274
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	147
BsrBI	CCGCTC	1 cut(s)	2886
BsrDI	GCAATG	1 cut(s)	3884
BsrGI	TGTACA	1 cut(s)	3782
BsrI	ACTGG	5 cut(s)	484, 2542, 3463, 3476, 3594
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	68, 215
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	3782
BstBI	TTCGAA	1 cut(s)	3274
BstC8I	GCNNGC	4 cut(s)	1400, 1616, 1620, 1688
BstF5I	GGATG	8 cut(s)	169, 880, 1024, 1168, 2624, 2823, 3710, 3767
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstMAI	GTCTC	6 cut(s)	147, 1493, 1565, 1781, 2069, 3625
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 140, 2547
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	3 cut(s)	29, 2564, 3307
BstPAI	GACNNNNGTC	3 cut(s)	387, 2563, 3058
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	2 cut(s)	691, 3372
BstSLI	GKGCMC	2 cut(s)	136, 3483
BstV1I	GCAGC	3 cut(s)	376, 3868, 3871
BstV2I	GAAGAC	2 cut(s)	689, 2349
BstX2I	RGATCY	9 cut(s)	457, 532, 2523, 2863, 3007, 3286, 3376, 3511, 3649
BstYI	RGATCY	9 cut(s)	457, 532, 2523, 2863, 3007, 3286, 3376, 3511, 3649
BsuRI	GGCC	3 cut(s)	255, 474, 2541
BtrI	CACGTC	2 cut(s)	2273, 2489
BtsCI	GGATG	8 cut(s)	169, 880, 1024, 1168, 2624, 2823, 3710, 3767
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	5 cut(s)	235, 477, 1225, 3483, 3837
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	1400, 1616, 1620, 1688
CaiI	CAGNNNCTG	2 cut(s)	3422, 3836
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	4 cut(s)	253, 382, 601, 3473
Csp6I	GTAC	1 cut(s)	3783
CviQI	GTAC	1 cut(s)	3783
DraI	TTTAAA	2 cut(s)	331, 591
DraIII	CACNNNGTG	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	3638
EaeI	YGGCCR	1 cut(s)	2539
Eam1105I	GACNNNNNGTC	1 cut(s)	3638
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	1841
Eco47I	GGWCC	3 cut(s)	382, 601, 3473
Eco47III	AGCGCT	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	3885
EcoRI	GAATTC	2 cut(s)	2892, 3179
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	1841
FaqI	GGGAC	1 cut(s)	3824
FbaI	TGATCA	1 cut(s)	2797
Fnu4HI	GCNGC	3 cut(s)	365, 3857, 3860
FokI	GGATG	8 cut(s)	176, 887, 1031, 1175, 2631, 2830, 3717, 3754
Fsp4HI	GCNGC	3 cut(s)	365, 3857, 3860
FspBI	CTAG	7 cut(s)	284, 302, 455, 2897, 3015, 3143, 3647
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	365, 3857, 3860
GsaI	CCCAGC	2 cut(s)	2531, 2682
GsuI	CTGGAG	3 cut(s)	3577, 3630, 3649
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	255, 474, 2541
HapII	CCGG	7 cut(s)	494, 872, 1016, 1160, 2825, 2847, 2943
HhaI	GCGC	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	3433
HindII	GTYRAC	1 cut(s)	3433
HindIII	AAGCTT	3 cut(s)	3229, 3787, 3818
HpaI	GTTAAC	1 cut(s)	3433
HpaII	CCGG	7 cut(s)	494, 872, 1016, 1160, 2825, 2847, 2943
HphI	GGTGA	5 cut(s)	236, 301, 317, 3326, 3371
Hpy166II	GTNNAC	6 cut(s)	134, 235, 1328, 2594, 3433, 3710
Hpy8I	GTNNAC	6 cut(s)	134, 235, 1328, 2594, 3433, 3710
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	8 cut(s)	6, 2894, 3095, 3219, 3341, 3464, 3556, 3774
HpyCH4III	ACNGT	2 cut(s)	68, 215
HpyCH4IV	ACGT	3 cut(s)	2272, 2488, 2929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 140, 2547
HpySE526I	ACGT	3 cut(s)	2272, 2488, 2929
HspAI	GCGC	1 cut(s)	422
Kpn2I	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
Ksp22I	TGATCA	1 cut(s)	2797
KspAI	GTTAAC	1 cut(s)	3433
LmnI	GCTCC	5 cut(s)	483, 496, 576, 663, 1547
Lsp1109I	GCAGC	3 cut(s)	376, 3868, 3871
MaeI	CTAG	7 cut(s)	284, 302, 455, 2897, 3015, 3143, 3647
MaeII	ACGT	3 cut(s)	2272, 2488, 2929
MaeIII	GTNAC	8 cut(s)	259, 389, 2118, 2682, 3187, 3314, 3665, 3897
MbiI	CCGCTC	1 cut(s)	2886
MfeI	CAATTG	2 cut(s)	42, 3215
MflI	RGATCY	9 cut(s)	457, 532, 2523, 2863, 3007, 3286, 3376, 3511, 3649
MlsI	TGGCCA	1 cut(s)	2541
MluNI	TGGCCA	1 cut(s)	2541
MlyI	GAGTC	9 cut(s)	240, 1366, 1438, 1582, 1654, 1726, 2086, 2183, 2374
Mox20I	TGGCCA	1 cut(s)	2541
MroI	TCCGGA	5 cut(s)	493, 871, 1015, 1159, 2942
MroXI	GAANNNNTTC	3 cut(s)	1526, 2246, 2770
MscI	TGGCCA	1 cut(s)	2541
MslI	CAYNNNNRTG	2 cut(s)	468, 2995
Msp20I	TGGCCA	1 cut(s)	2541
MspI	CCGG	7 cut(s)	494, 872, 1016, 1160, 2825, 2847, 2943
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	2 cut(s)	42, 3215
Mva1269I	GAATGC	2 cut(s)	1528, 2248
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	3 cut(s)	55, 140, 2547
NlaIV	GGNNCC	4 cut(s)	70, 113, 572, 2525
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	5 cut(s)	389, 2118, 2682, 3187, 3314
NspI	RCATGY	3 cut(s)	29, 2564, 3307
NspV	TTCGAA	1 cut(s)	3274
PciI	ACATGT	2 cut(s)	2560, 3303
PctI	GAATGC	2 cut(s)	1528, 2248
PdmI	GAANNNNTTC	3 cut(s)	1526, 2246, 2770
PkrI	GCNGC	3 cut(s)	366, 3858, 3861
PleI	GAGTC	9 cut(s)	239, 1366, 1438, 1582, 1654, 1726, 2086, 2183, 2374
PpsI	GAGTC	9 cut(s)	239, 1366, 1438, 1582, 1654, 1726, 2086, 2183, 2374
PscI	ACATGT	2 cut(s)	2560, 3303
PshAI	GACNNNNGTC	3 cut(s)	387, 2563, 3058
PsiI	TTATAA	2 cut(s)	2505, 3077
Psp1406I	AACGTT	1 cut(s)	2929
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	2 cut(s)	2527, 2678
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	70, 113, 572, 2525
PspPI	GGNCC	4 cut(s)	253, 382, 601, 3473
PstNI	CAGNNNCTG	2 cut(s)	3422, 3836
PsuI	RGATCY	9 cut(s)	457, 532, 2523, 2863, 3007, 3286, 3376, 3511, 3649
RsaI	GTAC	1 cut(s)	3784
RsaNI	GTAC	1 cut(s)	3783
RseI	CAYNNNNRTG	2 cut(s)	468, 2995
SatI	GCNGC	3 cut(s)	365, 3857, 3860
Sau96I	GGNCC	4 cut(s)	253, 382, 601, 3473
SchI	GAGTC	9 cut(s)	240, 1366, 1438, 1582, 1654, 1726, 2086, 2183, 2374
ScrFI	CCNGG	1 cut(s)	599
SfcI	CTRYAG	2 cut(s)	691, 3372
SfuI	TTCGAA	1 cut(s)	3274
SinI	GGWCC	3 cut(s)	382, 601, 3473
SmiMI	CAYNNNNRTG	2 cut(s)	468, 2995
SmlI	CTYRAG	4 cut(s)	116, 682, 3232, 3902
SmoI	CTYRAG	4 cut(s)	116, 682, 3232, 3902
SsiI	CCGC	3 cut(s)	2886, 3030, 3041
SspI	AATATT	4 cut(s)	326, 377, 795, 3506
SspMI	CTAG	7 cut(s)	284, 302, 455, 2897, 3015, 3143, 3647
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	68, 215
TaiI	ACGT	3 cut(s)	2275, 2491, 2932
TaqI	TCGA	5 cut(s)	615, 3274, 3368, 3560, 3657
TatI	WGTACW	1 cut(s)	3782
TscAI	CASTG	5 cut(s)	242, 484, 1225, 3483, 3837
TseFI	GTSAC	5 cut(s)	389, 2118, 2682, 3187, 3314
TseI	GCWGC	3 cut(s)	364, 3856, 3859
Tsp45I	GTSAC	5 cut(s)	389, 2118, 2682, 3187, 3314
TspDTI	ATGAA	8 cut(s)	180, 260, 821, 2403, 2697, 3104, 3546, 3756
TspGWI	ACGGA	1 cut(s)	3450
TspRI	CASTG	5 cut(s)	242, 484, 1225, 3483, 3837
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	3 cut(s)	382, 601, 3473
XapI	RAATTY	8 cut(s)	414, 489, 544, 733, 2767, 2892, 3179, 3570
XbaI	TCTAGA	4 cut(s)	2896, 3014, 3142, 3646
XceI	RCATGY	3 cut(s)	29, 2564, 3307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3342
XmnI	GAANNNNTTC	3 cut(s)	1526, 2246, 2770
XspI	CTAG	7 cut(s)	284, 302, 455, 2897, 3015, 3143, 3647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.