RchiOBHm_Chr7g0207481

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000028
Physical Location & Seq
Reverse (-)
24800633 .. 24803485
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18567

Sequence Viewer

Length: 2853 bp
ATGCCGATCAAGTCAGTCAATGAAGCAACTCCATTGCTGTTTCCACGATTGTACATATGTAGTTTCCAAAATCCTTTTGCTTCAACTATATATACTTCACTTTGCAGGTTGCATATCATCTTCATAATCATGTTTTTCAGTATAATGAGTGGTGGGTCTATGCATTCTGGTTTGGTTGGGCTTGTGTGCCTGGCCATTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTCCAACAACATCATGTGCTTGGAGAGTGAAAGGCATGCTCTTCTCCAGTTTAAACAAGGCCTTGCGGATGAGTCCAGTGATCTTGCCTCTTGGAAAAGTGAGAAAGATTGCTGCAAGTGGAGAGGAATAGCATGCACCAACCAAACAGGTCATGTCATCACTCTAGATCTCTCTTATAGTTATTATGCCGATTCCACTAAATGGAGAGGTGAAATTAGTCCTTCACTACTTGAATTGCGATATCTAAATTACTTGGATCTCAGTTATAATCATTTTGAAGGAATTATGATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGATGCTAATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTCGATCTTTCCAGGAACAAATATATTAGTTCAGAAAATCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACCTGAACATGTCAGAAGTAGATTTGTCAAAGGTTGTGAACTGGCCACAATCTTTAAGCAAGCTCACTTCACTTACAGAGCTTAAGTTATCTTGGTGTAATCTTCCTGATGTCAATCTAAGATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCAACTCCTTGACCTCTCTGGGAACTCTCTTAATTCTTCAATATTTTATTGGATAGCCAATGTCAGCAGCAACTTTGTCCATATTGATCTGTCTTGGAATAAACTTGAAGGTGGGATACCAAAAGGCTTTCAAAACTTATGTAGCTTAGAGTCGTTGACCTTATGGTCAAACCAATTGTCTGAAAACTTTGAAGACTCTGTTAAAACCTTGTCTTGTGCTGAGAACACACTTGAGACCGTGGAGTTGGGTTTTAACCAATTTTGGGGATCGTTGCCAGATTTGAAACGTTTTTTTAAGTTAAGAAAGTTAGATCTTTCCAATAATCAACTAAATGGGTCTGTACCCGAGAGTGTCGGGCAACTCTCTAGCCTTGAAAGATTATATCTCGACGGGAATTCTTTGAGTGGTGTCATAACAGAAGCCCACTTTTTGAACCTCTCTCGTTTACAGTATCTGAGTCTTTCTGGTAATCGTTTCTCTATCAACCTGAGCTCTGATTGGAATCCACCATTTCAGCTTTTGTGGTTAGATATGTCCTCTTGCAAGATGGGCCCAGCTTTTCCCAAGTGGATTCTAACGCAGACAAAGCTTACTCATCTTGATCTCTCTAATGCTGGACTATCAGGATCATTACCTATCCAGGTTTGGGATCTATTTTCTGGCTTATTTGATTTAGATCTCTCTATGAACCAAATCCATGGAAAACTGCCGAATCTGTCATCGACAAGCTTGGGTAATGTTAACTTGTCTTCTAATCTATTTTATGGCGCATTGCCATCATTTTCTCCTATGCTACAAAGCCTGTATCTCTCGAATAATAGGTTTTCTGGACCTTTGTCTTCCTTATGTGCAACGCAGTCTCCATATTTGGTGTATCTTGACATTTCTAAGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAGATTCAAGTATTGCAAGTGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTCGTTAGGCAATCTACAGTCAATTGGGATATTGCGTTTACATGATAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCCGATTAATAATGGTTGACCTTGGCAACAATAACTTGTCGGGAAAGATACCAACATGGATTGGCCAAAGTCTAACAAACTTGGCGATTCTACGCTTACGGTCCAATGAGTTCAATGGAATCATACCCTTCTCCCTGTGCACTCTAGCTGCCATTCATGTATTGGACCTCTCTCATAACAATATTTCCGGAGGCTTGCCGCATTGCTTCAATAACATTAGCCAAAGCGCTAATGATTATATCTATTATCCTTCTTTCCTTAATTTAGAACTCGTGTGGAAGGGAATAGAAATCGAGTTTGGGAAAAATCTTGCTGGTATGAGAAGCATTGACATGTCAAGCAACTATTTGGTGGGGGAAATTCCACAGTGTATAGCAAGTATGACAGAGTTGATTTCACTGAATCTGTCAAGAAACTGTTTGACAGGACAGCTTCCCGAAAACTTTGGTAACATGAAGATGTTGGAATCTCTTGATTTGTCAAGAAACCAGATATCTGGAAAAATTCCTGCAAGTTTTTCGAGATTAAACTATCTCGGAGTCTTGGACGTATCACACAACCACTTGTCAGGAAGAATTCCATTAGGCACCCAACTTCAGGGTTTCGATGCTTCTGCATATATGGAAAATCTTGGGCTTTGTGGACCACCGCTGCCACAAAGTTGTCCAGGAGATGGAACAGTTCAAGATGACGGAATCGCGAGAGGCACTAAAACTGTTAATGATGGTCTCATAAGCCTGGGATTCTTTATCAGTGCAGTGCTGGGATTCGTCACTGGATTTTGGATGGTCTTTGGAAGTTTACTGCTTAAGACTTCTTGGAGATGTGCTTATTTCGGATTCCTGGACAATGCAAAAGACTGGATTTATGTCAAAACTGTTGTGTACAAGGCAAAAGTGCGGAGGACACTTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

950

Amino Acids

105.29

Weight (kDa)

6.4

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 85 - 123 1.4e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 149 - 350 9.1e-12 Leucine-rich repeat region
LRR_8 PF13855 384 - 420 5.5e-06 Leucine rich repeat
LRR_8 PF13855 385 - 445 4.6e-09 Leucine rich repeat
LRR_8 PF13855 777 - 833 1.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AasI GACNNNNNNGTC 1 cut(s) 1021
Acc36I ACCTGC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 2519
AccB7I CCANNNNNTGG 2 cut(s) 432, 2606
AccII CGCG 1 cut(s) 2633
AccIII TCCGGA 1 cut(s) 2120
AciI CCGC 4 cut(s) 296, 2132, 2582, 2833
AclI AACGTT 1 cut(s) 1144
AclWI GGATC 4 cut(s) 495, 1132, 1492, 1515
AcoI YGGCCR 3 cut(s) 192, 746, 1996
AcsI RAATTY 5 cut(s) 1252, 1810, 2292, 2436, 2508
AcuI CTGAAG 1 cut(s) 2513
AfaI GTAC 4 cut(s) 53, 1200, 1933, 2819
AfeI AGCGCT 1 cut(s) 2161
AfiI CCNNNNNNNGG 6 cut(s) 432, 605, 1120, 1504, 2530, 2606
AflII CTTAAG 2 cut(s) 785, 2741
AflIII ACRYGT 2 cut(s) 711, 2265
AjnI CCWGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
AjuI GAANNNNNNNTTGG 2 cut(s) 2214, 2246
Alw21I GWGCWC 2 cut(s) 1352, 2075
Alw26I GTCTC 3 cut(s) 1085, 1722, 2666
Alw44I GTGCAC 1 cut(s) 2071
AlwI GGATC 4 cut(s) 495, 1132, 1492, 1515
AlwNI CAGNNNCTG 1 cut(s) 1312
Ama87I CYCGRG 1 cut(s) 1202
Aor13HI TCCGGA 1 cut(s) 2120
Aor51HI AGCGCT 1 cut(s) 2161
AoxI GGCC 5 cut(s) 192, 289, 746, 1408, 1996
ApaI GGGCCC 1 cut(s) 1412
ApaLI GTGCAC 1 cut(s) 2071
ApeKI GCWGC 4 cut(s) 342, 924, 2081, 2584
ApoI RAATTY 5 cut(s) 1252, 1810, 2292, 2436, 2508
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AseI ATTAAT 2 cut(s) 840, 1940
AspLEI GCGC 2 cut(s) 1628, 2162
AspS9I GGNCC 7 cut(s) 587, 1408, 1409, 1688, 2034, 2098, 2576
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 1202
AvaII GGWCC 5 cut(s) 587, 1688, 2034, 2098, 2576
BaeGI GKGCMC 2 cut(s) 1412, 2075
BalI TGGCCA 3 cut(s) 194, 748, 1998
BanI GGYRCC 1 cut(s) 2519
BanII GRGCYC 2 cut(s) 1352, 1412
BarI GAAGNNNNNNTAC 2 cut(s) 957, 989
BauI CACGAG 1 cut(s) 2204
BbsI GAAGAC 3 cut(s) 1056, 1599, 1689
Bbv12I GWGCWC 2 cut(s) 1352, 2075
BbvI GCAGC 4 cut(s) 329, 936, 2068, 2571
BccI CCATC 5 cut(s) 1399, 1642, 2600, 2651, 2713
BcgI CGANNNNNNTGC 4 cut(s) 2433, 2467, 2528, 2562
BciT130I CCWGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
BciVI GTATCC 1 cut(s) 966
BcoDI GTCTC 3 cut(s) 1085, 1722, 2666
BfaI CTAG 3 cut(s) 395, 1224, 2078
BfmI CTRYAG 1 cut(s) 1862
BfoI RGCGCY 1 cut(s) 2163
BfrI CTTAAG 2 cut(s) 785, 2741
BfuAI ACCTGC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 966
BglII AGATCT 3 cut(s) 397, 1168, 1534
BisI GCNGC 5 cut(s) 343, 925, 2082, 2132, 2585
BlsI GCNGC 5 cut(s) 344, 926, 2083, 2133, 2586
Bme1390I CCNGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
Bme18I GGWCC 5 cut(s) 587, 1688, 2034, 2098, 2576
BmeT110I CYCGRG 1 cut(s) 1202
BmgT120I GGNCC 7 cut(s) 587, 1408, 1409, 1688, 2034, 2098, 2576
BmiI GGNNCC 2 cut(s) 1410, 2521
BmrFI CCNGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
BmsI GCATC 3 cut(s) 562, 1773, 2530
BoxI GACNNNNGTC 1 cut(s) 1693
BpiI GAAGAC 3 cut(s) 1056, 1599, 1689
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 1346
BpuEI CTTGAG 3 cut(s) 692, 718, 1109
BsaBI GATNNNNATC 3 cut(s) 816, 1359, 1533
BsaI GGTCTC 2 cut(s) 1085, 2666
BsaJI CCNNGG 4 cut(s) 1095, 1555, 1954, 2671
BsaWI WCCGGW 1 cut(s) 2120
BsaXI ACNNNNNCTCC 2 cut(s) 1702, 1732
Bsc4I CCNNNNNNNGG 6 cut(s) 432, 605, 1120, 1504, 2530, 2606
Bse1I ACTGG 5 cut(s) 277, 306, 749, 2713, 2798
Bse3DI GCAATG 4 cut(s) 32, 195, 1628, 2134
Bse8I GATNNNNATC 3 cut(s) 816, 1359, 1533
BseAI TCCGGA 1 cut(s) 2120
BseBI CCWGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
BseDI CCNNGG 4 cut(s) 1095, 1555, 1954, 2671
BseGI GGATG 3 cut(s) 304, 1788, 2724
BseJI GATNNNNATC 3 cut(s) 816, 1359, 1533
BseLI CCNNNNNNNGG 6 cut(s) 432, 605, 1120, 1504, 2530, 2606
BseMI GCAATG 4 cut(s) 32, 195, 1628, 2134
BseMII CTCAG 4 cut(s) 505, 1068, 1304, 1337
BseNI ACTGG 5 cut(s) 277, 306, 749, 2713, 2798
BseSI GKGCMC 2 cut(s) 1412, 2075
BseXI GCAGC 4 cut(s) 329, 936, 2068, 2571
BseYI CCCAGC 2 cut(s) 1411, 2695
BsgI GTGCAG 1 cut(s) 2709
Bsh1236I CGCG 1 cut(s) 2633
BshFI GGCC 5 cut(s) 194, 291, 748, 1410, 1998
BshNI GGYRCC 1 cut(s) 2519
BsiHKAI GWGCWC 2 cut(s) 1352, 2075
BsiHKCI CYCGRG 1 cut(s) 1202
BsiSI CCGG 1 cut(s) 2121
BslI CCNNNNNNNGG 6 cut(s) 432, 605, 1120, 1504, 2530, 2606
BsmAI GTCTC 3 cut(s) 1085, 1722, 2666
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 5 cut(s) 194, 291, 748, 1410, 1998
Bso31I GGTCTC 2 cut(s) 1085, 2666
BsoBI CYCGRG 1 cut(s) 1202
Bsp120I GGGCCC 1 cut(s) 1408
Bsp1286I GDGCHC 3 cut(s) 1352, 1412, 2075
Bsp13I TCCGGA 1 cut(s) 2120
Bsp1407I TGTACA 2 cut(s) 51, 2817
Bsp19I CCATGG 1 cut(s) 1555
Bsp68I TCGCGA 1 cut(s) 2633
BspACI CCGC 4 cut(s) 296, 2132, 2582, 2833
BspANI GGCC 5 cut(s) 194, 291, 748, 1410, 1998
BspCNI CTCAG 4 cut(s) 504, 1069, 1305, 1338
BspEI TCCGGA 1 cut(s) 2120
BspFNI CGCG 1 cut(s) 2633
BspLI GGNNCC 2 cut(s) 1410, 2521
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 4 cut(s) 495, 1132, 1492, 1515
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 2519
BspTI CTTAAG 2 cut(s) 785, 2741
BspTNI GGTCTC 2 cut(s) 1085, 2666
BsrDI GCAATG 4 cut(s) 32, 195, 1628, 2134
BsrGI TGTACA 2 cut(s) 51, 2817
BsrI ACTGG 5 cut(s) 277, 306, 749, 2713, 2798
BssECI CCNNGG 4 cut(s) 1095, 1555, 1954, 2671
BssSI CACGAG 1 cut(s) 2204
BssT1I CCWWGG 2 cut(s) 1555, 1954
Bst2BI CACGAG 1 cut(s) 2204
Bst2UI CCWGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
Bst6I CTCTTC 2 cut(s) 276, 861
BstAFI CTTAAG 2 cut(s) 785, 2741
BstAUI TGTACA 2 cut(s) 51, 2817
BstC8I GCNNGC 4 cut(s) 267, 364, 764, 2129
BstDEI CTNAG 7 cut(s) 491, 821, 1003, 1077, 1313, 1346, 1746
BstDSI CCRYGG 2 cut(s) 1095, 1555
BstF5I GGATG 3 cut(s) 304, 1788, 2724
BstFNI CGCG 1 cut(s) 2633
BstH2I RGCGCY 1 cut(s) 2163
BstHHI GCGC 2 cut(s) 1628, 2162
BstMAI GTCTC 3 cut(s) 1085, 1722, 2666
BstMWI GCNNNNNNNGC 3 cut(s) 1407, 1444, 1854
BstNI CCWGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
BstNSI RCATGY 4 cut(s) 269, 366, 715, 2269
BstPAI GACNNNNGTC 1 cut(s) 1693
BstSCI CCNGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
BstSFI CTRYAG 1 cut(s) 1862
BstSLI GKGCMC 2 cut(s) 1412, 2075
BstUI CGCG 1 cut(s) 2633
BstV1I GCAGC 4 cut(s) 329, 936, 2068, 2571
BstV2I GAAGAC 3 cut(s) 1056, 1599, 1689
BstX2I RGATCY 5 cut(s) 397, 487, 1168, 1507, 1534
BstXI CCANNNNNNTGG 2 cut(s) 1556, 2429
BstYI RGATCY 5 cut(s) 397, 487, 1168, 1507, 1534
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 194, 291, 748, 1410, 1998
BtgI CCRYGG 2 cut(s) 1095, 1555
BtsCI GGATG 3 cut(s) 304, 1788, 2724
BtsI GCAGTG 1 cut(s) 2697
BtsIMutI CAGTG 7 cut(s) 313, 589, 2306, 2330, 2692, 2697, 2706
BtuMI TCGCGA 1 cut(s) 2633
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 4 cut(s) 267, 364, 764, 2129
CaiI CAGNNNCTG 1 cut(s) 1312
CfoI GCGC 2 cut(s) 1628, 2162
Cfr13I GGNCC 7 cut(s) 587, 1408, 1409, 1688, 2034, 2098, 2576
Csp6I GTAC 4 cut(s) 52, 1199, 1932, 2818
CviQI GTAC 4 cut(s) 52, 1199, 1932, 2818
DdeI CTNAG 7 cut(s) 491, 821, 1003, 1077, 1313, 1346, 1746
DraI TTTAAA 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 1021
DseDI GACNNNNNNGTC 1 cut(s) 1021
EaeI YGGCCR 3 cut(s) 192, 746, 1996
Eam1104I CTCTTC 2 cut(s) 276, 861
EarI CTCTTC 2 cut(s) 276, 861
Ecl136II GAGCTC 1 cut(s) 1350
Eco130I CCWWGG 2 cut(s) 1555, 1954
Eco147I AGGCCT 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 1352, 1412
Eco31I GGTCTC 2 cut(s) 1085, 2666
Eco32I GATATC 2 cut(s) 473, 2427
Eco47I GGWCC 5 cut(s) 587, 1688, 2034, 2098, 2576
Eco47III AGCGCT 1 cut(s) 2161
Eco53kI GAGCTC 1 cut(s) 1350
Eco57I CTGAAG 1 cut(s) 2513
Eco88I CYCGRG 1 cut(s) 1202
EcoICRI GAGCTC 1 cut(s) 1350
EcoRI GAATTC 2 cut(s) 1252, 2508
EcoRII CCWGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
EcoRV GATATC 2 cut(s) 473, 2427
EcoT14I CCWWGG 2 cut(s) 1555, 1954
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 1352, 1412
ErhI CCWWGG 2 cut(s) 1555, 1954
FauNDI CATATG 1 cut(s) 56
Fnu4HI GCNGC 5 cut(s) 343, 925, 2082, 2132, 2585
FokI GGATG 3 cut(s) 311, 1795, 2731
FriOI GRGCYC 2 cut(s) 1352, 1412
Fsp4HI GCNGC 5 cut(s) 343, 925, 2082, 2132, 2585
FspBI CTAG 3 cut(s) 395, 1224, 2078
GlaI GCGC 2 cut(s) 1627, 2161
GluI GCNGC 5 cut(s) 343, 925, 2082, 2132, 2585
GsaI CCCAGC 2 cut(s) 1415, 2699
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 2163
HaeIII GGCC 5 cut(s) 194, 291, 748, 1410, 1998
HapII CCGG 1 cut(s) 2121
HhaI GCGC 2 cut(s) 1628, 2162
Hin6I GCGC 2 cut(s) 1626, 2160
HinP1I GCGC 2 cut(s) 1626, 2160
HincII GTYRAC 3 cut(s) 1014, 1600, 1951
HindII GTYRAC 3 cut(s) 1014, 1600, 1951
HindIII AAGCTT 2 cut(s) 1445, 1585
HpaI GTTAAC 1 cut(s) 1600
HpaII CCGG 1 cut(s) 2121
HphI GGTGA 1 cut(s) 452
Hpy188I TCNGA 7 cut(s) 664, 718, 1039, 1314, 1354, 2471, 2771
Hpy99I CGWCG 1 cut(s) 1250
HpyAV CCTTC 7 cut(s) 462, 503, 959, 1926, 2071, 2193, 2206
HpyCH4IV ACGT 2 cut(s) 1144, 2481
HpyF10VI GCNNNNNNNGC 3 cut(s) 1407, 1444, 1854
HpyF3I CTNAG 7 cut(s) 491, 821, 1003, 1077, 1313, 1346, 1746
HpySE526I ACGT 2 cut(s) 1144, 2481
HspAI GCGC 2 cut(s) 1626, 2160
Kpn2I TCCGGA 1 cut(s) 2120
KspAI GTTAAC 1 cut(s) 1600
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 236, 1765
Lsp1109I GCAGC 4 cut(s) 329, 936, 2068, 2571
LweI GCATC 3 cut(s) 562, 1773, 2530
MaeI CTAG 3 cut(s) 395, 1224, 2078
MaeII ACGT 2 cut(s) 1144, 2481
MaeIII GTNAC 2 cut(s) 2381, 2704
MfeI CAATTG 3 cut(s) 548, 1031, 1869
MflI RGATCY 5 cut(s) 397, 487, 1168, 1507, 1534
MhlI GDGCHC 3 cut(s) 1352, 1412, 2075
MlsI TGGCCA 3 cut(s) 194, 748, 1998
MluNI TGGCCA 3 cut(s) 194, 748, 1998
MlyI GAGTC 6 cut(s) 311, 553, 1016, 1046, 1324, 2481
MmeI TCCRAC 4 cut(s) 205, 258, 1760, 2376
Mox20I TGGCCA 3 cut(s) 194, 748, 1998
Mph1103I ATGCAT 1 cut(s) 165
MroI TCCGGA 1 cut(s) 2120
MscI TGGCCA 3 cut(s) 194, 748, 1998
MslI CAYNNNNRTG 3 cut(s) 128, 2264, 2390
Msp20I TGGCCA 3 cut(s) 194, 748, 1998
MspA1I CMGCKG 1 cut(s) 2584
MspCI CTTAAG 2 cut(s) 785, 2741
MspI CCGG 1 cut(s) 2121
MspR9I CCNGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
MssI GTTTAAAC 1 cut(s) 283
MunI CAATTG 3 cut(s) 548, 1031, 1869
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
MvnI CGCG 1 cut(s) 2633
MwoI GCNNNNNNNGC 3 cut(s) 1407, 1444, 1854
NcoI CCATGG 1 cut(s) 1555
NdeI CATATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 1410, 2521
NmuCI GTSAC 1 cut(s) 2704
NruI TCGCGA 1 cut(s) 2633
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 4 cut(s) 269, 366, 715, 2269
PaeI GCATGC 2 cut(s) 269, 366
PceI AGGCCT 1 cut(s) 291
PciI ACATGT 2 cut(s) 711, 2265
PciSI GCTCTTC 1 cut(s) 276
PctI GAATGC 1 cut(s) 163
PflMI CCANNNNNTGG 2 cut(s) 432, 2606
PfoI TCCNGGA 3 cut(s) 641, 2599, 2775
PkrI GCNGC 5 cut(s) 344, 926, 2083, 2133, 2586
PleI GAGTC 6 cut(s) 310, 552, 1015, 1046, 1323, 2480
PmeI GTTTAAAC 1 cut(s) 283
PpsI GAGTC 6 cut(s) 310, 552, 1015, 1046, 1323, 2480
PscI ACATGT 2 cut(s) 711, 2265
PshAI GACNNNNGTC 1 cut(s) 1693
PshBI ATTAAT 2 cut(s) 840, 1940
PsiI TTATAA 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 1352
Psp1406I AACGTT 1 cut(s) 1144
Psp6I CCWGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
PspFI CCCAGC 2 cut(s) 1411, 2695
PspGI CCWGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
PspN4I GGNNCC 2 cut(s) 1410, 2521
PspOMI GGGCCC 1 cut(s) 1408
PspPI GGNCC 7 cut(s) 587, 1408, 1409, 1688, 2034, 2098, 2576
PstNI CAGNNNCTG 1 cut(s) 1312
PsuI RGATCY 5 cut(s) 397, 487, 1168, 1507, 1534
RruI TCGCGA 1 cut(s) 2633
RsaI GTAC 4 cut(s) 53, 1200, 1933, 2819
RsaNI GTAC 4 cut(s) 52, 1199, 1932, 2818
RseI CAYNNNNRTG 3 cut(s) 128, 2264, 2390
SacI GAGCTC 1 cut(s) 1352
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 5 cut(s) 343, 925, 2082, 2132, 2585
Sau96I GGNCC 7 cut(s) 587, 1408, 1409, 1688, 2034, 2098, 2576
SchI GAGTC 6 cut(s) 311, 553, 1016, 1046, 1324, 2481
ScrFI CCNGG 6 cut(s) 191, 643, 1499, 2601, 2672, 2777
SduI GDGCHC 3 cut(s) 1352, 1412, 2075
SfaNI GCATC 3 cut(s) 562, 1773, 2530
SfcI CTRYAG 1 cut(s) 1862
SinI GGWCC 5 cut(s) 587, 1688, 2034, 2098, 2576
SmiMI CAYNNNNRTG 3 cut(s) 128, 2264, 2390
SmlI CTYRAG 5 cut(s) 671, 697, 785, 1088, 2741
SmoI CTYRAG 5 cut(s) 671, 697, 785, 1088, 2741
SphI GCATGC 2 cut(s) 269, 366
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 4 cut(s) 296, 2132, 2582, 2833
SspI AATATT 2 cut(s) 900, 2116
SspMI CTAG 3 cut(s) 395, 1224, 2078
SstI GAGCTC 1 cut(s) 1352
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 6 cut(s) 189, 641, 1497, 2599, 2670, 2775
StyI CCWWGG 2 cut(s) 1555, 1954
TaiI ACGT 2 cut(s) 1147, 2484
TaqI TCGA 7 cut(s) 633, 1245, 1580, 1670, 2226, 2453, 2538
TatI WGTACW 2 cut(s) 51, 2817
TauI GCSGC 1 cut(s) 2134
TscAI CASTG 7 cut(s) 313, 589, 2306, 2337, 2692, 2697, 2713
TseFI GTSAC 1 cut(s) 2704
TseI GCWGC 4 cut(s) 342, 924, 2081, 2584
Tsp45I GTSAC 1 cut(s) 2704
TspDTI ATGAA 6 cut(s) 36, 112, 520, 1559, 2078, 2402
TspGWI ACGGA 1 cut(s) 2640
TspRI CASTG 7 cut(s) 313, 589, 2306, 2337, 2692, 2697, 2713
Van91I CCANNNNNTGG 2 cut(s) 432, 2606
Vha464I CTTAAG 2 cut(s) 785, 2741
VneI GTGCAC 1 cut(s) 2071
VpaK11BI GGWCC 5 cut(s) 587, 1688, 2034, 2098, 2576
VspI ATTAAT 2 cut(s) 840, 1940
XapI RAATTY 5 cut(s) 1252, 1810, 2292, 2436, 2508
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 4 cut(s) 269, 366, 715, 2269
XcmI CCANNNNNNNNNTGG 1 cut(s) 2092
XspI CTAG 3 cut(s) 395, 1224, 2078
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.