RLG00000003293

Leucine Rich repeat

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
46776095 .. 46779061
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003293

Sequence Viewer

Length: 2610 bp
ATGTTTTTCAGTAATTTGAGTGGTGGGTCTATGCATTCTGGTTTGGTTGGGCTTCTGTGCCTGGCCATTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAACTCCAACAACATCATGTGCTTGGAGAGTGAAAGGCATGCTCTTCTCCAGTTCAAACTAGGCCTTGTGGATGAGTCCAATGCTCTTGCTTCTTGGAAAACTGAGAAAGATTGCTGCAAGTGGAGAGGAATAGCATGCAACAACCAAACAGGTCATGTTATCACTCTCGATCTCTCTTATACCTATGATGCTAATCTCGATTCCACTGAATTGAGAGGTGAAATTAGTCCTTCACTACTTGAATTGCGATATCTAAATTACTTGGACCTCAGTTATAATGATTTTGGAGGAATAATCATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGATGCTAATTTCAGTGGACCTGTTCCTCTCCAACTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCAGGAACACATTTGTTAGTTTTGAGAATATTGAGTGGTTATCTCATTTTTCTTCCTTGAGATACCTGAACATGTCACATCTAGATTTGTTTGAGGCTGTGAATTGGCCACAATCTTTAAGCAAGCTCACTTCACTTACAGAGCTCAGGTTATCTTGGTGTAATCTTCCTGATGTCAATCTAAGATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCAACTCCTTGACCTCTCTAGGAACTCTCTTAATTCTTCAATATTTTATTGGATAGCCAATGTCAGCAGCAACTTTGTCCATATTGATCTCTCTTCCAATCAACTTGAAGGTGGGATACCAAAAGGTTTTCAAAACTTATGCAGCTTAGAGTTGTTGTACTTGAGTGTAAACAAATTGTCTGAAAACATTGAGGACACTGTTAAAACCTTGTCTTGTGCTGAGAACACACTTGACACCTTGGACTTGGGTTTTAACCAATTTTGGGGATCGTTGCCAGATTTGACACGTTTCTCAAATTTAAGAGAGTTGATTCTTTTGAGGAATCAACTAAATGGGTCTGTACCCAAGAGTGTCGGGCAACTCTCTAGCCTTGAACATCTATATCTCTCCTGGAATTCTTTCACTGGTGTCATAACAGAATCCCACTTTCTAAACCTCTCTCGTTTACAGGCTTTGCTTCTTTCAAGTAATTATTTCTCTATCAATCTAAGCTCAGATTGGAATCCACCATTTCAACTCACTTATTTACACATGTCCTTCCATAAGCTGGGCCCAGCTATTCCCAAATGGATTCTAAGGCAAACAAATCTTCGAGTTCTTTTTCTCTCTAATGCTAGTCTATCAGGATCATTACCTAATAAGTTTTGGGATCTATTTTCTGGCTTGGATTACTTAGATCTCTCTATGAACCAAATCCATGGGAAACTACCGAATCTGTCATCGACAAGCTTAGGTCATGTTAACTTGTCTTCTAATCTATTTTCTGGCGCATTGCCAACATTTTCTCCCATGCTCATTCGGTTGTATCTCTCGAATAATAGCTTTTCAGGACCCTTGTCTTCCTTATGTGCAATGCAGGCTCCAAATTTGGAGTACCTTGACCTTTCTAAGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAGAATTGGAAATGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTCGTTAGGCAATCTACAGGGAATTGCAATATTGCGTTTACATGACAACAACCTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCAGATTATTGATGGTTGACCTTGGCAACAATAACCTGTCGGGAAAGATACCACCATGGATTGGCCAAAGCCTAACAAACTTGGTGATTCTACGCTTACGGTCAAATGAGTTTAATGGAATCATACCCTTCTCCCTGTGCAGTCTAGCTGCCATTCATGTTTTGGACCTTTCTCAGAACAATATTTCAGGAGGCTTGCCACATTGCTTCAATAACATAACCTCGTTGGCAAATGATACTACAGCTTATGATTTTATTGTGGAACTTGTGTGGAAAGGAATAGAAATTGAGTTTGGGGAAAATCTTGACAGTATGAGAAGCGTTGACATTTCAAGCAACTATTTGACTGGGGAAATTCCGCCAAGTATAGCAAGTATGACAGAGTTGAAATCTCTGAACCTGTCTAGAAACAAATTGACGGGAAAGCTTCCTGAAGACTTTGGTAACATGAAGATGTTGGAATCTCTTGATTTGTCAAGAAACCGGATATCTGGTAAAATTCCTACAAGTTTTGCGAGCTTAAACTTTCTTAGTGTCTTGGACTTATCACACAACAACTTGTCAGGAAGAATTCCATCAGGCACCCAACTTCAGGGTTTTAATGCTTCTCAATATATGGGAAATCTTGGACTTTGTGGACCACCGCTGACACAAAGTTGTCCAGGAGAAGGAACAGTTCAAGATGATGGAATCGCGAGAGGAACTGAAATTCATAACAAAGAGCAGGTTGATGATGGAGATTCTGGCATTCAGGGAAATGATGAGCCTAATTTCCCAGAAGTGGAAAAATTCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

870

Amino Acids

95.95

Weight (kDa)

5.25

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 80 4.7e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 107 - 306 6.8e-09 Leucine-rich repeat region
LRR_8 PF13855 707 - 766 1.7e-10 Leucine rich repeat
LRR_14 PF23598 725 - 789 4e-06 Leucine-rich repeat region
LRR_8 PF13855 731 - 790 5.4e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 2524
AccB1I GGYRCC 1 cut(s) 2390
AccB7I CCANNNNNTGG 2 cut(s) 1282, 1871
AccII CGCG 1 cut(s) 2504
AciI CCGC 2 cut(s) 2168, 2453
AclWI GGATC 3 cut(s) 1009, 1369, 1392
AcoI YGGCCR 3 cut(s) 63, 623, 1873
AcsI RAATTY 9 cut(s) 1030, 1129, 1600, 1687, 2163, 2307, 2379, 2517, 2597
AcuI CTGAAG 2 cut(s) 2262, 2384
AfaI GTAC 4 cut(s) 893, 1077, 1610, 1810
AfiI CCNNNNNNNGG 6 cut(s) 997, 1282, 1871, 2401, 2477, 2590
AflIII ACRYGT 3 cut(s) 588, 1019, 1266
AjnI CCWGG 4 cut(s) 60, 518, 1124, 2470
AjuI GAANNNNNNNTTGG 2 cut(s) 2085, 2117
Alw21I GWGCWC 1 cut(s) 663
AlwI GGATC 3 cut(s) 1009, 1369, 1392
AoxI GGCC 5 cut(s) 63, 160, 623, 1285, 1873
ApaI GGGCCC 1 cut(s) 1289
ApeKI GCWGC 4 cut(s) 213, 801, 876, 1958
ApoI RAATTY 9 cut(s) 1030, 1129, 1600, 1687, 2163, 2307, 2379, 2517, 2597
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 1133
AspLEI GCGC 1 cut(s) 1505
AspS9I GGNCC 7 cut(s) 364, 464, 1285, 1286, 1565, 1975, 2447
AsuHPI GGTGA 2 cut(s) 329, 1906
AvaII GGWCC 5 cut(s) 364, 464, 1565, 1975, 2447
BaeGI GKGCMC 1 cut(s) 1289
BalI TGGCCA 3 cut(s) 65, 625, 1875
BanI GGYRCC 1 cut(s) 2390
BanII GRGCYC 2 cut(s) 663, 1289
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbsI GAAGAC 3 cut(s) 1476, 1566, 2250
Bbv12I GWGCWC 1 cut(s) 663
BbvI GCAGC 4 cut(s) 200, 813, 888, 1945
BccI CCATC 4 cut(s) 1816, 2392, 2489, 2537
BciT130I CCWGG 4 cut(s) 62, 520, 1126, 2472
BciVI GTATCC 1 cut(s) 843
BfaI CTAG 7 cut(s) 158, 599, 753, 1101, 1350, 1955, 2214
BfmI CTRYAG 2 cut(s) 1739, 2049
BfuAI ACCTGC 1 cut(s) 2524
BfuI GTATCC 1 cut(s) 843
BglII AGATCT 1 cut(s) 1411
BisI GCNGC 4 cut(s) 214, 802, 877, 1959
BlsI GCNGC 4 cut(s) 215, 803, 878, 1960
Bme1390I CCNGG 4 cut(s) 62, 520, 1126, 2472
Bme18I GGWCC 5 cut(s) 364, 464, 1565, 1975, 2447
BmgT120I GGNCC 7 cut(s) 364, 464, 1285, 1286, 1565, 1975, 2447
BmiI GGNNCC 4 cut(s) 1287, 1567, 1596, 2392
BmrFI CCNGG 4 cut(s) 62, 520, 1126, 2472
BmrI ACTGGG 1 cut(s) 2166
BmsI GCATC 3 cut(s) 277, 439, 1650
BmuI ACTGGG 1 cut(s) 2166
BoxI GACNNNNGTC 1 cut(s) 1570
BpiI GAAGAC 3 cut(s) 1476, 1566, 2250
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 2 cut(s) 662, 1465
BpuEI CTTGAG 2 cut(s) 595, 916
BsaBI GATNNNNATC 3 cut(s) 291, 693, 1236
BsaJI CCNNGG 4 cut(s) 972, 1432, 1831, 1865
BsaWI WCCGGW 1 cut(s) 2292
BsaXI ACNNNNNCTCC 2 cut(s) 1504, 1534
Bsc4I CCNNNNNNNGG 6 cut(s) 997, 1282, 1871, 2401, 2477, 2590
Bse1I ACTGG 3 cut(s) 148, 1144, 2161
Bse3DI GCAATG 4 cut(s) 66, 1505, 1593, 2011
Bse8I GATNNNNATC 3 cut(s) 291, 693, 1236
BseBI CCWGG 4 cut(s) 62, 520, 1126, 2472
BseDI CCNNGG 4 cut(s) 972, 1432, 1831, 1865
BseGI GGATG 2 cut(s) 175, 1665
BseJI GATNNNNATC 3 cut(s) 291, 693, 1236
BseLI CCNNNNNNNGG 6 cut(s) 997, 1282, 1871, 2401, 2477, 2590
BseMI GCAATG 4 cut(s) 66, 1505, 1593, 2011
BseMII CTCAG 6 cut(s) 192, 382, 676, 945, 1242, 1997
BseNI ACTGG 3 cut(s) 148, 1144, 2161
BseSI GKGCMC 1 cut(s) 1289
BseXI GCAGC 4 cut(s) 200, 813, 888, 1945
BseYI CCCAGC 2 cut(s) 1282, 1288
BsgI GTGCAG 1 cut(s) 1969
Bsh1236I CGCG 1 cut(s) 2504
BshFI GGCC 5 cut(s) 65, 162, 625, 1287, 1875
BshNI GGYRCC 1 cut(s) 2390
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 1 cut(s) 2293
BslI CCNNNNNNNGG 6 cut(s) 997, 1282, 1871, 2401, 2477, 2590
BsmI GAATGC 2 cut(s) 34, 2556
BsnI GGCC 5 cut(s) 65, 162, 625, 1287, 1875
Bsp120I GGGCCC 1 cut(s) 1285
Bsp1286I GDGCHC 2 cut(s) 663, 1289
Bsp143I GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
Bsp19I CCATGG 2 cut(s) 1432, 1865
Bsp68I TCGCGA 1 cut(s) 2504
BspACI CCGC 2 cut(s) 2168, 2453
BspANI GGCC 5 cut(s) 65, 162, 625, 1287, 1875
BspCNI CTCAG 6 cut(s) 193, 381, 675, 946, 1241, 1996
BspFNI CGCG 1 cut(s) 2504
BspLI GGNNCC 4 cut(s) 1287, 1567, 1596, 2392
BspMI ACCTGC 1 cut(s) 2524
BspPI GGATC 3 cut(s) 1009, 1369, 1392
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 2390
BsrDI GCAATG 4 cut(s) 66, 1505, 1593, 2011
BsrI ACTGG 3 cut(s) 148, 1144, 2161
BssECI CCNNGG 4 cut(s) 972, 1432, 1831, 1865
BssMI GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
BssT1I CCWWGG 4 cut(s) 972, 1432, 1831, 1865
Bst2UI CCWGG 4 cut(s) 62, 520, 1126, 2472
Bst4CI ACNGT 5 cut(s) 934, 1808, 1911, 2120, 2485
Bst6I CTCTTC 3 cut(s) 147, 738, 832
BstC8I GCNNGC 6 cut(s) 138, 235, 641, 1593, 2006, 2326
BstDSI CCRYGG 2 cut(s) 1432, 1865
BstF5I GGATG 2 cut(s) 175, 1665
BstFNI CGCG 1 cut(s) 2504
BstHHI GCGC 1 cut(s) 1505
BstKTI GATC 8 cut(s) 271, 514, 704, 823, 1004, 1364, 1387, 1414
BstMBI GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
BstMWI GCNNNNNNNGC 2 cut(s) 1592, 1731
BstNI CCWGG 4 cut(s) 62, 520, 1126, 2472
BstNSI RCATGY 4 cut(s) 140, 237, 592, 1270
BstPAI GACNNNNGTC 1 cut(s) 1570
BstSCI CCNGG 4 cut(s) 60, 518, 1124, 2470
BstSFI CTRYAG 2 cut(s) 1739, 2049
BstSLI GKGCMC 1 cut(s) 1289
BstUI CGCG 1 cut(s) 2504
BstV1I GCAGC 4 cut(s) 200, 813, 888, 1945
BstV2I GAAGAC 3 cut(s) 1476, 1566, 2250
BstX2I RGATCY 2 cut(s) 1384, 1411
BstXI CCANNNNNNTGG 1 cut(s) 1433
BstYI RGATCY 2 cut(s) 1384, 1411
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 5 cut(s) 65, 162, 625, 1287, 1875
BtgI CCRYGG 2 cut(s) 1432, 1865
BtsCI GGATG 2 cut(s) 175, 1665
BtsIMutI CAGTG 4 cut(s) 303, 466, 930, 1137
BtuMI TCGCGA 1 cut(s) 2504
BveI ACCTGC 1 cut(s) 2524
Cac8I GCNNGC 6 cut(s) 138, 235, 641, 1593, 2006, 2326
CfoI GCGC 1 cut(s) 1505
Cfr13I GGNCC 7 cut(s) 364, 464, 1285, 1286, 1565, 1975, 2447
Csp6I GTAC 4 cut(s) 892, 1076, 1609, 1809
CviQI GTAC 4 cut(s) 892, 1076, 1609, 1809
DpnI GATC 8 cut(s) 270, 513, 703, 822, 1003, 1363, 1386, 1413
DpnII GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
EaeI YGGCCR 3 cut(s) 63, 623, 1873
Eam1104I CTCTTC 3 cut(s) 147, 738, 832
EarI CTCTTC 3 cut(s) 147, 738, 832
EciI GGCGGA 1 cut(s) 2157
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 4 cut(s) 972, 1432, 1831, 1865
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 663, 1289
Eco32I GATATC 2 cut(s) 350, 2298
Eco47I GGWCC 5 cut(s) 364, 464, 1565, 1975, 2447
Eco53kI GAGCTC 1 cut(s) 661
Eco57I CTGAAG 2 cut(s) 2262, 2384
EcoICRI GAGCTC 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 1565
EcoRI GAATTC 2 cut(s) 1129, 2379
EcoRII CCWGG 4 cut(s) 60, 518, 1124, 2470
EcoRV GATATC 2 cut(s) 350, 2298
EcoT14I CCWWGG 4 cut(s) 972, 1432, 1831, 1865
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 663, 1289
ErhI CCWWGG 4 cut(s) 972, 1432, 1831, 1865
Fnu4HI GCNGC 4 cut(s) 214, 802, 877, 1959
FokI GGATG 2 cut(s) 182, 1672
FriOI GRGCYC 2 cut(s) 663, 1289
Fsp4HI GCNGC 4 cut(s) 214, 802, 877, 1959
FspBI CTAG 7 cut(s) 158, 599, 753, 1101, 1350, 1955, 2214
GlaI GCGC 1 cut(s) 1504
GluI GCNGC 4 cut(s) 214, 802, 877, 1959
GsaI CCCAGC 2 cut(s) 1286, 1292
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 5 cut(s) 65, 162, 625, 1287, 1875
HapII CCGG 1 cut(s) 2293
HhaI GCGC 1 cut(s) 1505
Hin6I GCGC 1 cut(s) 1503
HinP1I GCGC 1 cut(s) 1503
HincII GTYRAC 3 cut(s) 1477, 1828, 2134
HindII GTYRAC 3 cut(s) 1477, 1828, 2134
HindIII AAGCTT 2 cut(s) 1462, 2234
HpaI GTTAAC 1 cut(s) 1477
HpaII CCGG 1 cut(s) 2293
HphI GGTGA 2 cut(s) 329, 1906
Hpy166II GTNNAC 8 cut(s) 464, 904, 1181, 1477, 1763, 1828, 2134, 2447
Hpy188I TCNGA 4 cut(s) 916, 1231, 1986, 2205
Hpy8I GTNNAC 8 cut(s) 464, 904, 1181, 1477, 1763, 1828, 2134, 2447
HpyAV CCTTC 6 cut(s) 339, 836, 1282, 1803, 1948, 2471
HpyCH4III ACNGT 5 cut(s) 934, 1808, 1911, 2120, 2485
HpyCH4IV ACGT 1 cut(s) 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 1592, 1731
HpySE526I ACGT 1 cut(s) 1021
HspAI GCGC 1 cut(s) 1503
KspAI GTTAAC 1 cut(s) 1477
Kzo9I GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 1600, 1642
Lsp1109I GCAGC 4 cut(s) 200, 813, 888, 1945
LweI GCATC 3 cut(s) 277, 439, 1650
MaeI CTAG 7 cut(s) 158, 599, 753, 1101, 1350, 1955, 2214
MaeII ACGT 1 cut(s) 1021
MaeIII GTNAC 2 cut(s) 591, 2252
MalI GATC 8 cut(s) 270, 513, 703, 822, 1003, 1363, 1386, 1413
MboI GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 2 cut(s) 1384, 1411
MhlI GDGCHC 2 cut(s) 663, 1289
MlsI TGGCCA 3 cut(s) 65, 625, 1875
MluNI TGGCCA 3 cut(s) 65, 625, 1875
MlyI GAGTC 2 cut(s) 182, 430
MmeI TCCRAC 5 cut(s) 76, 129, 502, 1637, 2247
Mox20I TGGCCA 3 cut(s) 65, 625, 1875
Mph1103I ATGCAT 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 1133
MscI TGGCCA 3 cut(s) 65, 625, 1875
MslI CAYNNNNRTG 1 cut(s) 2261
Msp20I TGGCCA 3 cut(s) 65, 625, 1875
MspA1I CMGCKG 1 cut(s) 2455
MspI CCGG 1 cut(s) 2293
MspR9I CCNGG 4 cut(s) 62, 520, 1126, 2472
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 2 cut(s) 34, 2556
MvaI CCWGG 4 cut(s) 62, 520, 1126, 2472
MvnI CGCG 1 cut(s) 2504
MwoI GCNNNNNNNGC 2 cut(s) 1592, 1731
NcoI CCATGG 2 cut(s) 1432, 1865
NdeII GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
NlaIV GGNNCC 4 cut(s) 1287, 1567, 1596, 2392
NmuCI GTSAC 1 cut(s) 591
NruI TCGCGA 1 cut(s) 2504
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 4 cut(s) 140, 237, 592, 1270
PaeI GCATGC 2 cut(s) 140, 237
PceI AGGCCT 1 cut(s) 162
PciI ACATGT 2 cut(s) 588, 1266
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 2 cut(s) 34, 2556
PdmI GAANNNNTTC 1 cut(s) 1133
PflMI CCANNNNNTGG 2 cut(s) 1282, 1871
PfoI TCCNGGA 3 cut(s) 518, 1124, 2470
PkrI GCNGC 4 cut(s) 215, 803, 878, 1960
PleI GAGTC 2 cut(s) 181, 429
PpsI GAGTC 2 cut(s) 181, 429
PpuMI RGGWCCY 1 cut(s) 1565
PscI ACATGT 2 cut(s) 588, 1266
PshAI GACNNNNGTC 1 cut(s) 1570
PshBI ATTAAT 1 cut(s) 717
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 1565
Psp6I CCWGG 4 cut(s) 60, 518, 1124, 2470
PspFI CCCAGC 2 cut(s) 1282, 1288
PspGI CCWGG 4 cut(s) 60, 518, 1124, 2470
PspN4I GGNNCC 4 cut(s) 1287, 1567, 1596, 2392
PspOMI GGGCCC 1 cut(s) 1285
PspPI GGNCC 7 cut(s) 364, 464, 1285, 1286, 1565, 1975, 2447
PspPPI RGGWCCY 1 cut(s) 1565
PsuI RGATCY 2 cut(s) 1384, 1411
RruI TCGCGA 1 cut(s) 2504
RsaI GTAC 4 cut(s) 893, 1077, 1610, 1810
RsaNI GTAC 4 cut(s) 892, 1076, 1609, 1809
RseI CAYNNNNRTG 1 cut(s) 2261
SacI GAGCTC 1 cut(s) 663
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 4 cut(s) 214, 802, 877, 1959
Sau3AI GATC 8 cut(s) 268, 511, 701, 820, 1001, 1361, 1384, 1411
Sau96I GGNCC 7 cut(s) 364, 464, 1285, 1286, 1565, 1975, 2447
SchI GAGTC 2 cut(s) 182, 430
ScrFI CCNGG 4 cut(s) 62, 520, 1126, 2472
SduI GDGCHC 2 cut(s) 663, 1289
SfaNI GCATC 3 cut(s) 277, 439, 1650
SfcI CTRYAG 2 cut(s) 1739, 2049
SinI GGWCC 5 cut(s) 364, 464, 1565, 1975, 2447
SmiMI CAYNNNNRTG 1 cut(s) 2261
SmlI CTYRAG 2 cut(s) 574, 895
SmoI CTYRAG 2 cut(s) 574, 895
SphI GCATGC 2 cut(s) 140, 237
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 2 cut(s) 2168, 2453
SspI AATATT 4 cut(s) 547, 777, 1755, 1993
SspMI CTAG 7 cut(s) 158, 599, 753, 1101, 1350, 1955, 2214
SstI GAGCTC 1 cut(s) 663
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 4 cut(s) 60, 518, 1124, 2470
StyI CCWWGG 4 cut(s) 972, 1432, 1831, 1865
TaaI ACNGT 5 cut(s) 934, 1808, 1911, 2120, 2485
TaiI ACGT 1 cut(s) 1024
TaqI TCGA 5 cut(s) 267, 297, 1327, 1457, 1547
TatI WGTACW 1 cut(s) 891
TscAI CASTG 4 cut(s) 310, 466, 937, 1144
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 4 cut(s) 213, 801, 876, 1958
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 5 cut(s) 397, 1436, 1955, 2273, 2510
TspRI CASTG 4 cut(s) 310, 466, 937, 1144
Van91I CCANNNNNTGG 2 cut(s) 1282, 1871
VpaK11BI GGWCC 5 cut(s) 364, 464, 1565, 1975, 2447
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 9 cut(s) 1030, 1129, 1600, 1687, 2163, 2307, 2379, 2517, 2597
XbaI TCTAGA 2 cut(s) 598, 2213
XceI RCATGY 4 cut(s) 140, 237, 592, 1270
XcmI CCANNNNNNNNNTGG 2 cut(s) 1819, 1969
XmnI GAANNNNTTC 1 cut(s) 1133
XspI CTAG 7 cut(s) 158, 599, 753, 1101, 1350, 1955, 2214
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.