MD01G1212600.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000028
Physical Location & Seq
Reverse (-)
30613680 .. 30616574
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1212600.v1.1.491

Sequence Viewer

Length: 2895 bp
ATGTTGCTCACAATCATATATTCTGTCTTGTTCGCTCTTACATCTGCCAAATGCTGTCTGGGTGCTGGAATCAGTTCCAACATCAGGTGCTTACAAGCAGAAAAAACCGCTCTGCTTCAGTTCAAACAGGGCCTCATCGACCAGTCCAACGTTCTTGCCTCTTGGGAAACCGGCAAAGATTGTTGCGAGTGGAGAGGAATCGCTTGCAATAACGAAACAGGTCATGTCGTCACCCTAGATCTCTATCACAGTTCTTTTGATATATATGGTGTTAAAACTCCTCTAAGTGGTGTGATTGCTCCTTCTCTACTTGAGTTGCCATATCTAACTTACTTGGACCTCAGTTTCAATCATTTCCAAGGACAAATTCCCAAGTTCATCGGTTCCTTGAGTCGATTGGAACAACTCAAACTAGCAGGTGCTAATCTTAGCGGACCAATTCCTCCCCAACTTGGAAATCTCTCTAGTTTGTATACTCTTGATCTTGCACGGAACCATGTCACATTTGAAAATCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGGTACTTGAATATGTCGCGTCTTAATTTTTCCAAGGTTGTAAATTGGCCAGAATCTATAAGCAAACTCCCTTCACTTGTTGAGCTTCAGTTATCTTGGTGTAATCTTCCCAATGTCGAACTGAGTTCGTTTTCTTTTGTCAATTCTTCAAACTCTCTTGAAGTCCTTGAACTCTCATATAATATTCTTGATCTTTCGATATTTTATTGGATGGCCAATGTCAGCACCAACCTTGTTCACATTGGTTTAGTTGGTGATCATATTCCAGGTCCCTTCCCAGATGTTTTCGCAAATATGGTTTCTCTCGTCTCTCTTGATCTCTCATATAACAAACTTGAAGGTGGGATACCAAAATCCTTTCGAAACCTTTGCAGCTTAGAGTTCTTGAATTTAGAGGGAAGTACACTTTCCGACAGACTTGAAGACTCTGTCGAAAACTTGTCTTGTGCTCAAGACACCCTCGAGTCCTTGTCTTTAAGTGGGAACCCGTTTTCGGGTTCATATCCTGACAACCTTACAAGATTTTCATCCTTGAAAGAGTTGTACATTGATGGCACCAACGTAAGGGGATCTCTTCCAAAAAGTTTTCAGCCACTCTCCCAGCTAAGATCCTTGAGCCTAGTTCAAAACCAGTTCACCGGATCACTGCCTGATTTTACAGGTCTTTCGTTGTTAAGGCAGTTATATATCTCCCAAAATCAACTCAGCGGATCTCTTCCTGAGAGTATCGGCCAACTTTCCAGCCTCGAAGATTTAGATCTTTCTTGGAATTCTTTAAATGGTGTCATAACTGAAGTGCACTTTTCCAATCTCTCCCGTTTAAACTCTTTGGATTTTTCTCATAATCCTTTGTCTTTTAACTTTAGCTCGGATTGGAATCCGCCTTTCCAAATCAAAATTCTAGGATTGTCCTCTTGCAAGGTTGGCCCTGCTTTTCCGAAATGGATTCAAACTCAGAAAAAACTTACTTCACTTTACATGGCTGATGCTGAGATTTCGGATTCTATACCTGATAAGTTTTGGGATCTGTCTTCCAGCTTCCTCGAGTTAAACCTATCAATGAACCAAATCCCTGGAAAGTTGCCAAATCTGTCAACAAAAAACTGCACCTTCCGTTATTTTGACTTGTCATCTAATCTCTTGGACGGCCCACTTCCGCCATTTCCATCAAGTGTAACCATCCTGCGTCTCTCCCAAAACATGTTTTCAGGACCCTTATCTTACTTTTGTGAAACAGAAGCTCCAGACTTGTATGATCTAGACCTTTCCGACAATCAGTTATCCGGCGAACTTCCTAGTTGTTGGATGCAGTTTCGACGTTTGTTCTTCTTGAACATGGCTAAGAACAATCTGTCCGGGAAAATTCCAAGCTCATTAGGCTACTTAAAATATGTTGTATTGTTACGCTTACAGGATAACAAACTTTCCGGAGAATTGCCTTCTTTGGAGAACTGTACAGAATTAAGAGTTGTTGACCTCGGTGCCAATAAGCTATCTGGAAAGATACCGACATGGATAGGCCCGAGCCTAACAAAGTTGCTGGTTCTTCGCTTAAAGTCGAATGAGTTTTATGGAAGCATACCTTTAAGTCTATGCAGTCTTCCTGCGCTTCATGTTTTGGACTTCTCCAAGAACAATCTATCCGGAGCCTTGCCCCATTGCCTCCCTAACATAACAGCCTATTCTTCGATGTCCCCCGAGGTGAAGGACAACTCTGAAGTTGGGTTTGTGCAACTGGTTTGGAAAGGAATATTGATTGAGTTTGGCGAAAATCTTAAGCTTTTGAGAAGCATTGACATTTCGAGCAACAACTTGAGTGGAGATATTCCAGAAAGTGTAACAAGCTTGTTGAGGTTGATTTCTCTGAACCTGTCAAGCAACAATTTTACTGGGGTGCTTCCTAACAACTTTGGTCAGCTGGAGATGTTAGAATCGCTTGATTTGTCCCGAAACCAGATATCTGGTAGCATCCCTCCGAGTTTTTCGAGCTTACATTTTCTTGGTGTCTTGGACTTGTCATACAACAACTTATCAGGAAGAATTCCGCTAAGTACTCAACTTCAAAGTTTTAATGCTTCTCAATTTACGGGAAATCTTGGACTTTGCGGGCAACCGCTCACACCAGAATGCCCGAGAGATGTAACAACTGAAGATCCTTCAGTCCCTAATGGCAGTGGAAGTGACAAGAACAAACAAGATAGTGATGGTCTCATAAGCTTGGGATTTTATGTTAGCTTGGCGCTTGGATTTATCATAGGATTCTGGAGTGTTTGTGGTACTTTAGTCCTCAAGACGTCTTGGAGATACGCCTATTTCCGATTCATTGATGATATAAAAGCTCGGATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

965

Amino Acids

106.49

Weight (kDa)

5.13

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 70 4.3e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 103 - 235 1.1e-07 Leucine-rich repeat region
LRR_8 PF13855 258 - 315 3e-07 Leucine rich repeat
LRR_8 PF13855 334 - 393 3e-06 Leucine rich repeat
LRR_14 PF23598 348 - 507 1.1e-10 Leucine-rich repeat region
LRR_8 PF13855 400 - 440 4.8e-06 Leucine rich repeat
LRR_8 PF13855 776 - 834 1.4e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
AatII GACGTC 1 cut(s) 2840
Acc36I ACCTGC 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 1097, 2024
AccBSI CCGCTC 2 cut(s) 110, 2659
AccI GTMKAC 1 cut(s) 473
AccII CGCG 1 cut(s) 562
AccIII TCCGGA 2 cut(s) 1970, 2186
AciI CCGC 8 cut(s) 108, 432, 1251, 1424, 1700, 2588, 2649, 2657
AclI AACGTT 1 cut(s) 150
AclWI GGATC 6 cut(s) 1120, 1146, 1192, 1261, 1575, 2690
AcoI YGGCCR 3 cut(s) 590, 756, 1273
AcsI RAATTY 6 cut(s) 366, 931, 1312, 1440, 1905, 2583
AcuI CTGAAG 6 cut(s) 101, 614, 1356, 2280, 2685, 2712
AcyI GRCGYC 1 cut(s) 2837
AfaI GTAC 6 cut(s) 548, 946, 1088, 1999, 2596, 2821
AfiI CCNNNNNNNGG 6 cut(s) 84, 287, 452, 1036, 1037, 1107
AflII CTTAAG 1 cut(s) 2318
AflIII ACRYGT 1 cut(s) 1743
AjnI CCWGG 2 cut(s) 808, 1615
AjuI GAANNNNNNNTTGG 4 cut(s) 351, 383, 1425, 1457
AloI GAACNNNNNNTCC 4 cut(s) 1880, 1912, 2168, 2200
Alw21I GWGCWC 2 cut(s) 994, 1344
Alw26I GTCTC 3 cut(s) 856, 1736, 2756
Alw44I GTGCAC 1 cut(s) 1340
AlwI GGATC 6 cut(s) 1120, 1146, 1192, 1261, 1575, 2690
Ama87I CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
Aor13HI TCCGGA 2 cut(s) 1970, 2186
AoxI GGCC 7 cut(s) 130, 590, 756, 1273, 1468, 1690, 2062
ApaLI GTGCAC 1 cut(s) 1340
ApeKI GCWGC 1 cut(s) 915
ApoI RAATTY 6 cut(s) 366, 931, 1312, 1440, 1905, 2583
Asp700I GAANNNNTTC 1 cut(s) 73
AspLEI GCGC 2 cut(s) 2152, 2785
AspS9I GGNCC 8 cut(s) 130, 337, 434, 812, 1469, 1691, 1754, 2063
AsuC2I CCSGG 1 cut(s) 1900
AsuHPI GGTGA 4 cut(s) 223, 809, 1171, 2257
AsuII TTCGAA 1 cut(s) 904
AvaI CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
AvaII GGWCC 4 cut(s) 337, 434, 812, 1754
BaeGI GKGCMC 1 cut(s) 1344
BaeI ACNNNNGTAYC 2 cut(s) 2811, 2844
BalI TGGCCA 2 cut(s) 592, 758
BanI GGYRCC 2 cut(s) 1097, 2024
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
BbsI GAAGAC 3 cut(s) 972, 1566, 2135
Bbv12I GWGCWC 2 cut(s) 994, 1344
BbvI GCAGC 1 cut(s) 927
BccI CCATC 5 cut(s) 748, 1088, 1717, 1730, 2741
BceAI ACGGC 1 cut(s) 1705
BcgI CGANNNNNNTGC 2 cut(s) 894, 928
BciT130I CCWGG 2 cut(s) 810, 1617
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 1900
BcoDI GTCTC 3 cut(s) 856, 1736, 2756
BfaI CTAG 7 cut(s) 236, 413, 465, 1163, 1445, 1802, 1839
BfoI RGCGCY 1 cut(s) 2786
BfrI CTTAAG 1 cut(s) 2318
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 1 cut(s) 882
BglII AGATCT 2 cut(s) 238, 1300
BisI GCNGC 1 cut(s) 916
BlsI GCNGC 1 cut(s) 917
BmcAI AGTACT 1 cut(s) 2596
Bme1390I CCNGG 3 cut(s) 810, 1617, 1900
Bme18I GGWCC 4 cut(s) 337, 434, 812, 1754
BmeT110I CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
BmgT120I GGNCC 8 cut(s) 130, 337, 434, 812, 1469, 1691, 1754, 2063
BmiI GGNNCC 8 cut(s) 385, 494, 814, 1028, 1099, 1756, 2026, 2191
BmrFI CCNGG 3 cut(s) 810, 1617, 1900
BmrI ACTGGG 1 cut(s) 2442
BmsI GCATC 3 cut(s) 1519, 1839, 2520
BmuI ACTGGG 1 cut(s) 2442
BpiI GAAGAC 3 cut(s) 972, 1566, 2135
BpmI CTGGAG 3 cut(s) 1770, 2483, 2827
Bpu14I TTCGAA 1 cut(s) 904
BpuEI CTTGAG 8 cut(s) 332, 409, 536, 562, 978, 1177, 2377, 2816
BpuMI CCSGG 1 cut(s) 1900
BsaBI GATNNNNATC 4 cut(s) 243, 1069, 1299, 1419
BsaHI GRCGYC 1 cut(s) 2837
BsaI GGTCTC 1 cut(s) 2756
BsaJI CCNNGG 5 cut(s) 358, 576, 1615, 2020, 2241
BsaWI WCCGGW 3 cut(s) 1181, 1970, 2186
BsaXI ACNNNNNCTCC 4 cut(s) 1768, 1798, 2800, 2830
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 287, 452, 1036, 1037, 1107
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 4 cut(s) 142, 1174, 2283, 2437
Bse3DI GCAATG 1 cut(s) 2200
Bse8I GATNNNNATC 4 cut(s) 243, 1069, 1299, 1419
BseAI TCCGGA 2 cut(s) 1970, 2186
BseBI CCWGG 2 cut(s) 810, 1617
BseDI CCNNGG 5 cut(s) 358, 576, 1615, 2020, 2241
BseGI GGATG 5 cut(s) 759, 1070, 1722, 1854, 2511
BseJI GATNNNNATC 4 cut(s) 243, 1069, 1299, 1419
BseLI CCNNNNNNNGG 6 cut(s) 84, 287, 452, 1036, 1037, 1107
BseMI GCAATG 1 cut(s) 2200
BseMII CTCAG 6 cut(s) 355, 656, 1254, 1261, 1511, 1524
BseNI ACTGG 4 cut(s) 142, 1174, 2283, 2437
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 1344
BseXI GCAGC 1 cut(s) 927
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 1633
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 7 cut(s) 132, 592, 758, 1275, 1470, 1692, 2064
BshNI GGYRCC 2 cut(s) 1097, 2024
BsiHKAI GWGCWC 2 cut(s) 994, 1344
BsiHKCI CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
BsiSI CCGG 6 cut(s) 171, 1182, 1827, 1899, 1971, 2187
BslFI GGGAC 4 cut(s) 798, 2221, 2473, 2690
BslI CCNNNNNNNGG 6 cut(s) 84, 287, 452, 1036, 1037, 1107
BsmAI GTCTC 3 cut(s) 856, 1736, 2756
BsmBI CGTCTC 2 cut(s) 856, 1736
BsmFI GGGAC 4 cut(s) 798, 2221, 2473, 2690
BsmI GAATGC 1 cut(s) 2675
BsnI GGCC 7 cut(s) 132, 592, 758, 1275, 1470, 1692, 2064
Bso31I GGTCTC 1 cut(s) 2756
BsoBI CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
Bsp119I TTCGAA 1 cut(s) 904
Bsp1286I GDGCHC 2 cut(s) 994, 1344
Bsp13I TCCGGA 2 cut(s) 1970, 2186
Bsp1407I TGTACA 2 cut(s) 1086, 1997
BspACI CCGC 8 cut(s) 108, 432, 1251, 1424, 1700, 2588, 2649, 2657
BspANI GGCC 7 cut(s) 132, 592, 758, 1275, 1470, 1692, 2064
BspCNI CTCAG 6 cut(s) 354, 657, 1255, 1260, 1510, 1525
BspEI TCCGGA 2 cut(s) 1970, 2186
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 8 cut(s) 385, 494, 814, 1028, 1099, 1756, 2026, 2191
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 6 cut(s) 1120, 1146, 1192, 1261, 1575, 2690
BspT104I TTCGAA 1 cut(s) 904
BspT107I GGYRCC 2 cut(s) 1097, 2024
BspTI CTTAAG 1 cut(s) 2318
BspTNI GGTCTC 1 cut(s) 2756
BsrBI CCGCTC 2 cut(s) 110, 2659
BsrDI GCAATG 1 cut(s) 2200
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 2 cut(s) 1086, 1997
BsrI ACTGG 4 cut(s) 142, 1174, 2283, 2437
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 5 cut(s) 358, 576, 1615, 2020, 2241
BssNAI GTATAC 1 cut(s) 474
BssNI GRCGYC 1 cut(s) 2837
BssT1I CCWWGG 2 cut(s) 358, 576
Bst1107I GTATAC 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 810, 1617
Bst4CI ACNGT 2 cut(s) 251, 1997
Bst6I CTCTTC 2 cut(s) 1122, 1263
BstACI GRCGYC 1 cut(s) 2837
BstAFI CTTAAG 1 cut(s) 2318
BstAUI TGTACA 2 cut(s) 1086, 1997
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 2 cut(s) 205, 2651
BstF5I GGATG 5 cut(s) 759, 1070, 1722, 1854, 2511
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 2786
BstHHI GCGC 2 cut(s) 2152, 2785
BstMAI GTCTC 3 cut(s) 856, 1736, 2756
BstMWI GCNNNNNNNGC 2 cut(s) 1467, 1920
BstNI CCWGG 2 cut(s) 810, 1617
BstNSI RCATGY 1 cut(s) 1747
BstSCI CCNGG 3 cut(s) 808, 1615, 1898
BstSLI GKGCMC 1 cut(s) 1344
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 1 cut(s) 927
BstV2I GAAGAC 3 cut(s) 972, 1566, 2135
BstX2I RGATCY 7 cut(s) 238, 1112, 1151, 1253, 1300, 1567, 2695
BstXI CCANNNNNNTGG 2 cut(s) 1616, 2504
BstYI RGATCY 7 cut(s) 238, 1112, 1151, 1253, 1300, 1567, 2695
BstZ17I GTATAC 1 cut(s) 474
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 7 cut(s) 132, 592, 758, 1275, 1470, 1692, 2064
BtsCI GGATG 5 cut(s) 759, 1070, 1722, 1854, 2511
BtsI GCAGTG 2 cut(s) 1187, 2722
BtsIMutI CAGTG 2 cut(s) 1187, 2722
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 2 cut(s) 205, 2651
CfoI GCGC 2 cut(s) 2152, 2785
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 8 cut(s) 130, 337, 434, 812, 1469, 1691, 1754, 2063
CseI GACGC 2 cut(s) 551, 1718
Csp6I GTAC 6 cut(s) 547, 945, 1087, 1998, 2595, 2820
CspCI CAANNNNNGTGG 2 cut(s) 2341, 2376
CviAII CATG 7 cut(s) 224, 497, 1522, 1744, 1879, 2055, 2156
CviQI GTAC 6 cut(s) 547, 945, 1087, 1998, 2595, 2820
DraI TTTAAA 2 cut(s) 1320, 1365
EaeI YGGCCR 3 cut(s) 590, 756, 1273
Eam1104I CTCTTC 2 cut(s) 1122, 1263
EarI CTCTTC 2 cut(s) 1122, 1263
EciI GGCGGA 2 cut(s) 1413, 1689
Eco130I CCWWGG 2 cut(s) 358, 576
Eco31I GGTCTC 1 cut(s) 2756
Eco32I GATATC 1 cut(s) 2502
Eco47I GGWCC 4 cut(s) 337, 434, 812, 1754
Eco57I CTGAAG 6 cut(s) 101, 614, 1356, 2280, 2685, 2712
Eco88I CYCGRG 5 cut(s) 1004, 1586, 2065, 2240, 2674
EcoO109I RGGNCCY 3 cut(s) 130, 812, 1754
EcoRI GAATTC 2 cut(s) 1312, 2583
EcoRII CCWGG 2 cut(s) 808, 1615
EcoRV GATATC 1 cut(s) 2502
EcoT14I CCWWGG 2 cut(s) 358, 576
ErhI CCWWGG 2 cut(s) 358, 576
Esp3I CGTCTC 2 cut(s) 856, 1736
FaeI CATG 7 cut(s) 227, 500, 1525, 1747, 1882, 2058, 2159
FalI AAGNNNNNCTT 2 cut(s) 2110, 2142
FaqI GGGAC 4 cut(s) 798, 2221, 2473, 2690
FatI CATG 7 cut(s) 223, 496, 1521, 1743, 1878, 2054, 2155
FauI CCCGC 1 cut(s) 2642
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 1 cut(s) 916
FokI GGATG 5 cut(s) 766, 1057, 1709, 1861, 2498
Fsp4HI GCNGC 1 cut(s) 916
FspBI CTAG 7 cut(s) 236, 413, 465, 1163, 1445, 1802, 1839
GlaI GCGC 2 cut(s) 2151, 2784
GluI GCNGC 1 cut(s) 916
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 3 cut(s) 1770, 2483, 2827
HaeII RGCGCY 1 cut(s) 2786
HaeIII GGCC 7 cut(s) 132, 592, 758, 1275, 1470, 1692, 2064
HapII CCGG 6 cut(s) 171, 1182, 1827, 1899, 1971, 2187
HgaI GACGC 2 cut(s) 551, 1718
HhaI GCGC 2 cut(s) 2152, 2785
Hin1I GRCGYC 1 cut(s) 2837
Hin1II CATG 7 cut(s) 227, 500, 1525, 1747, 1882, 2058, 2159
Hin6I GCGC 2 cut(s) 2150, 2783
HinP1I GCGC 2 cut(s) 2150, 2783
HincII GTYRAC 2 cut(s) 1638, 2017
HindII GTYRAC 2 cut(s) 1638, 2017
HindIII AAGCTT 3 cut(s) 2321, 2386, 2758
HpaII CCGG 6 cut(s) 171, 1182, 1827, 1899, 1971, 2187
HphI GGTGA 4 cut(s) 223, 809, 1171, 2257
Hpy166II GTNNAC 7 cut(s) 474, 781, 947, 1179, 1342, 1638, 2017
Hpy8I GTNNAC 7 cut(s) 474, 781, 947, 1179, 1342, 1638, 2017
Hpy99I CGWCG 1 cut(s) 1863
HpyAV CCTTC 8 cut(s) 312, 624, 826, 875, 1663, 1992, 2242, 2709
HpyCH4III ACNGT 2 cut(s) 251, 1997
HpyCH4IV ACGT 4 cut(s) 150, 1104, 1861, 2837
HpyCH4V TGCA 9 cut(s) 207, 488, 915, 1342, 1461, 1650, 1852, 2139, 2275
HpyF10VI GCNNNNNNNGC 2 cut(s) 1467, 1920
HpySE526I ACGT 4 cut(s) 150, 1104, 1861, 2837
Hsp92I GRCGYC 1 cut(s) 2837
Hsp92II CATG 7 cut(s) 227, 500, 1525, 1747, 1882, 2058, 2159
HspAI GCGC 2 cut(s) 2150, 2783
Kpn2I TCCGGA 2 cut(s) 1970, 2186
Ksp22I TGATCA 1 cut(s) 799
LmnI GCTCC 3 cut(s) 304, 1789, 2189
Lsp1109I GCAGC 1 cut(s) 927
LweI GCATC 3 cut(s) 1519, 1839, 2520
MaeI CTAG 7 cut(s) 236, 413, 465, 1163, 1445, 1802, 1839
MaeII ACGT 4 cut(s) 150, 1104, 1861, 2837
MaeIII GTNAC 7 cut(s) 229, 499, 1717, 1944, 2380, 2683, 2723
MbiI CCGCTC 2 cut(s) 110, 2659
MflI RGATCY 7 cut(s) 238, 1112, 1151, 1253, 1300, 1567, 2695
MhlI GDGCHC 2 cut(s) 994, 1344
MlsI TGGCCA 2 cut(s) 592, 758
MluNI TGGCCA 2 cut(s) 592, 758
MlyI GAGTC 3 cut(s) 400, 962, 1016
MmeI TCCRAC 5 cut(s) 102, 171, 978, 1826, 1836
Mox20I TGGCCA 2 cut(s) 592, 758
MroI TCCGGA 2 cut(s) 1970, 2186
MroXI GAANNNNTTC 1 cut(s) 73
MscI TGGCCA 2 cut(s) 592, 758
MslI CAYNNNNRTG 1 cut(s) 2668
Msp20I TGGCCA 2 cut(s) 592, 758
MspA1I CMGCKG 2 cut(s) 1251, 2461
MspCI CTTAAG 1 cut(s) 2318
MspI CCGG 6 cut(s) 171, 1182, 1827, 1899, 1971, 2187
MspR9I CCNGG 3 cut(s) 810, 1617, 1900
MssI GTTTAAAC 1 cut(s) 1365
Mva1269I GAATGC 1 cut(s) 2675
MvaI CCWGG 2 cut(s) 810, 1617
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 1467, 1920
NciI CCSGG 1 cut(s) 1900
NlaIII CATG 7 cut(s) 227, 500, 1525, 1747, 1882, 2058, 2159
NlaIV GGNNCC 8 cut(s) 385, 494, 814, 1028, 1099, 1756, 2026, 2191
NmuCI GTSAC 3 cut(s) 229, 499, 2723
NspI RCATGY 1 cut(s) 1747
NspV TTCGAA 1 cut(s) 904
PaeR7I CTCGAG 2 cut(s) 1004, 1586
PaqCI CACCTGC 1 cut(s) 407
PciI ACATGT 1 cut(s) 1743
PctI GAATGC 1 cut(s) 2675
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 9 cut(s) 69, 198, 596, 1420, 1489, 1544, 2474, 2802, 2862
PflFI GACNNNGTC 1 cut(s) 971
PfoI TCCNGGA 1 cut(s) 1898
PkrI GCNGC 1 cut(s) 917
PleI GAGTC 3 cut(s) 399, 962, 1015
PmeI GTTTAAAC 1 cut(s) 1365
PpsI GAGTC 3 cut(s) 399, 962, 1015
PpuMI RGGWCCY 2 cut(s) 812, 1754
PscI ACATGT 1 cut(s) 1743
Psp1406I AACGTT 1 cut(s) 150
Psp5II RGGWCCY 2 cut(s) 812, 1754
Psp6I CCWGG 2 cut(s) 808, 1615
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 2 cut(s) 808, 1615
PspN4I GGNNCC 8 cut(s) 385, 494, 814, 1028, 1099, 1756, 2026, 2191
PspPI GGNCC 8 cut(s) 130, 337, 434, 812, 1469, 1691, 1754, 2063
PspPPI RGGWCCY 2 cut(s) 812, 1754
PspXI VCTCGAGB 2 cut(s) 1004, 1586
PsuI RGATCY 7 cut(s) 238, 1112, 1151, 1253, 1300, 1567, 2695
PsyI GACNNNGTC 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 2461
RsaI GTAC 6 cut(s) 548, 946, 1088, 1999, 2596, 2821
RsaNI GTAC 6 cut(s) 547, 945, 1087, 1998, 2595, 2820
RseI CAYNNNNRTG 1 cut(s) 2668
SatI GCNGC 1 cut(s) 916
Sau96I GGNCC 8 cut(s) 130, 337, 434, 812, 1469, 1691, 1754, 2063
ScaI AGTACT 1 cut(s) 2596
SchI GAGTC 3 cut(s) 400, 962, 1016
ScrFI CCNGG 3 cut(s) 810, 1617, 1900
SduI GDGCHC 2 cut(s) 994, 1344
SfaNI GCATC 3 cut(s) 1519, 1839, 2520
Sfr274I CTCGAG 2 cut(s) 1004, 1586
SfuI TTCGAA 1 cut(s) 904
SinI GGWCC 4 cut(s) 337, 434, 812, 1754
SlaI CTCGAG 2 cut(s) 1004, 1586
SmiMI CAYNNNNRTG 1 cut(s) 2668
SsiI CCGC 8 cut(s) 108, 432, 1251, 1424, 1700, 2588, 2649, 2657
SspI AATATT 2 cut(s) 727, 2295
SspMI CTAG 7 cut(s) 236, 413, 465, 1163, 1445, 1802, 1839
StyD4I CCNGG 3 cut(s) 808, 1615, 1898
StyI CCWWGG 2 cut(s) 358, 576
TaaI ACNGT 2 cut(s) 251, 1997
TaiI ACGT 4 cut(s) 153, 1107, 1864, 2840
TatI WGTACW 4 cut(s) 944, 1086, 1997, 2594
TfiI GAWTC 9 cut(s) 69, 198, 596, 1420, 1489, 1544, 2474, 2802, 2862
TscAI CASTG 2 cut(s) 1194, 2722
TseFI GTSAC 3 cut(s) 229, 499, 2723
TseI GCWGC 1 cut(s) 915
Tsp45I GTSAC 3 cut(s) 229, 499, 2723
TspDTI ATGAA 6 cut(s) 367, 1032, 1059, 1619, 2144, 2854
TspGWI ACGGA 2 cut(s) 505, 1646
TspRI CASTG 2 cut(s) 1194, 2722
Tth111I GACNNNGTC 1 cut(s) 971
Vha464I CTTAAG 1 cut(s) 2318
VneI GTGCAC 1 cut(s) 1340
VpaK11BI GGWCC 4 cut(s) 337, 434, 812, 1754
XapI RAATTY 6 cut(s) 366, 931, 1312, 1440, 1905, 2583
XbaI TCTAGA 1 cut(s) 1801
XceI RCATGY 1 cut(s) 1747
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XhoI CTCGAG 2 cut(s) 1004, 1586
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 7 cut(s) 236, 413, 465, 1163, 1445, 1802, 1839
ZraI GACGTC 1 cut(s) 2838
ZrmI AGTACT 1 cut(s) 2596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.