RLG00000003301

Leucine Rich repeat

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
46895107 .. 46897581
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003301

Sequence Viewer

Length: 2100 bp
ATGAGTGGTGGGTCTATGCATTCTGGTTTGGTTGGGCTTGTGTGCCTGGCCATTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTCCAACAACATTATGTGCTTGGAGAGTGAGAGGCATGCTCTTCTCCGGTTCAAACAAGGCCTTGTGGATGATTCCAATGCTCTTGCCTCTTGGGAAAACAAGAAAGATTGCTGCAAGTGGAGAGGAATAGCATGCAACAACCAAACAGGTCATGTCACCACTCTTGATTTCTCCTTTAGATATTTCAATTATACAGAAGTTCCCTTAAGAGGTGAAATTAGTCCTTCACTACTTGAATTGCCATTTCTAAATTACTTGGATCTCAGTTATAATGATTTTGAAGGAACTATGATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGTATATGCTAATTTCAAGGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTTAAGCTTGACAACAATCAAGTAAATGGGTCTCTACCCGAGAGTGTCGGGCAACTCTCTAGCCTTGAAGAGCTCTCTCTCTGCAATAATTCTTTGAGTGGTGTCATAACAGAAGCCCACTTTTTGAACCTATCTCGTTTACAGGCTTTGGATCTTTCTGATAATCATTTCTCCATCAACCTAAGCTCTGATTGGAATCCACCATTTCAACTTATTGGTTGGTTAGGTATGTCCTCTTGCAAGGTGGGCCCAACTTTTCCCAAGTGGATTCTAACGCAGACAAATCTTACCGGTCTTTCTCTCTCTAATGCTGGTCTATCAGGATCATTACCTAATAAGTTTTGGGATCTATTTTCTGGCTTAGATAGCTTAGATCTCTCTATGAACCAAATCCATGGGAAACTGCCGAATCTGTCATCGACAAGCTTGATGTTTCTCAACTTGTCTTCTAATCTATTTTATGGCGCAGTGCCATCATTTTCTCCTATGCTCTGGGAGTTGTTTCTCTCGAATAACATGTTTTCTGAGCTGTTGTCTTCCTTCTGTGCAACGCAGTCTTTAGATGCAAGGGAAGTTGACATTTCTACGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAAATTTGATTTCGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTCGTTAGGCAATCTAAATGGAATTGAGGCATTGAATTTACATGATAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTAGAGGATTATCGATTGTTGACCTTGGCAACAATAACTTGTCGGGAAAGATACCAACATGGATTGGCCAAAGCCTACCAAACTTGTTAATTCTACGCTTACGGTCAAATGAGTTTAATGGAATTATACCCTTCTCCCTGTGCAGTCTAGTTGCCATTCATGTTTTGGACCTCTCTCACAATAATATTTCAGGAGGCTTGCCACATTGCTTCAATAACATAACCGCTTTGGCTGATGATTCGCAAGTTGATAGTATTATTGTGGAACTTGTGTGGAAAGGAAAAGAAATTGAGTTTCCCAATCTTATCGGTTTGAGAAGCATTGACATTTCAAGCAACTATTTGATTGGGGAAATTCCGCCAAGTATAGCAAGTATGACAGAGTTGAAATCTCTGAACCTGTCTAGAAACAAATTGACGGGAAAGCTTCCTGAAGACTTTGGTAACATGAAGATGTTGGAATGTCTTGATTTGTCAAGAAACCGGATATCTGGTAAAATTCCTACAAGTTTTGCGAGCTTAAACTTTCTTAGTGTCTTGGACTTATCACACAACTACTTGTCTGGAAGAATTCCGTTACGCACCCAACTTCAGGGTTTTAATGCTTCTCAATATATGGGAAATCTTGGACTTTGTGGACCACCGCTGACACAAAGTTGTCCAGGAGAAGGAACATTTCAAGATGATGGAATCGCGAGAGGAACTGAAATTGATAACAAAGAACAGGAGATTCTGGCATTCAGGGAAATGATGAGCCTAATTTCCCAGAAGTGGAAAAATTCAAGGCTTAATGTTGAAGGTTTTTCAGATGCCGTTGCTTTCTCATCACTCGGCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

700

Amino Acids

76.53

Weight (kDa)

5.4

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 37 - 75 1.7e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 88 - 264 2.6e-12 Leucine-rich repeat region
LRR_8 PF13855 159 - 220 1.2e-07 Leucine rich repeat
LRR_8 PF13855 421 - 482 1.1e-06 Leucine rich repeat
LRR_8 PF13855 523 - 582 7e-11 Leucine rich repeat
LRR_14 PF23598 542 - 602 4.9e-06 Leucine-rich repeat region
LRR_8 PF13855 566 - 606 2.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccII CGCG 1 cut(s) 1952
AciI CCGC 3 cut(s) 1482, 1616, 1901
AclWI GGATC 4 cut(s) 354, 648, 820, 843
AcoI YGGCCR 2 cut(s) 48, 1324
AcsI RAATTY 7 cut(s) 1123, 1138, 1210, 1611, 1755, 1827, 2035
AcuI CTGAAG 2 cut(s) 1710, 1832
AfiI CCNNNNNNNGG 5 cut(s) 296, 464, 1849, 1925, 2028
AflII CTTAAG 2 cut(s) 292, 491
AflIII ACRYGT 1 cut(s) 1005
AgeI ACCGGT 1 cut(s) 779
AjnI CCWGG 2 cut(s) 45, 1918
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 4 cut(s) 354, 648, 820, 843
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 4 cut(s) 48, 145, 736, 1324
ApaI GGGCCC 1 cut(s) 740
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 7 cut(s) 1123, 1138, 1210, 1611, 1755, 1827, 2035
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AsiGI ACCGGT 1 cut(s) 779
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 5 cut(s) 446, 736, 737, 1426, 1895
AsuHPI GGTGA 2 cut(s) 235, 311
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 3 cut(s) 446, 1426, 1895
BaeGI GKGCMC 1 cut(s) 740
BalI TGGCCA 2 cut(s) 50, 1326
BanII GRGCYC 2 cut(s) 564, 740
BbsI GAAGAC 3 cut(s) 927, 1017, 1698
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 185
BccI CCATC 3 cut(s) 671, 970, 1937
BceAI ACGGC 1 cut(s) 2054
BciT130I CCWGG 2 cut(s) 47, 1920
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 3 cut(s) 549, 1406, 1662
BfmI CTRYAG 1 cut(s) 1258
BfrI CTTAAG 2 cut(s) 292, 491
BglII AGATCT 1 cut(s) 862
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 47, 1920
Bme18I GGWCC 3 cut(s) 446, 1426, 1895
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 5 cut(s) 446, 736, 737, 1426, 1895
BmiI GGNNCC 2 cut(s) 447, 738
BmrFI CCNGG 2 cut(s) 47, 1920
BmsI GCATC 3 cut(s) 1042, 1101, 2056
BpiI GAAGAC 3 cut(s) 927, 1017, 1698
BplI GAGNNNNNCTC 2 cut(s) 109, 141
Bpu10I CCTNAGC 1 cut(s) 671
Bsa29I ATCGAT 1 cut(s) 1271
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 883, 1282
BsaWI WCCGGW 3 cut(s) 132, 779, 1740
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 464, 1849, 1925, 2028
Bse118I RCCGGY 1 cut(s) 779
Bse3DI GCAATG 2 cut(s) 51, 1462
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 2 cut(s) 47, 1920
BseCI ATCGAT 1 cut(s) 1271
BseDI CCNNGG 2 cut(s) 883, 1282
BseGI GGATG 2 cut(s) 160, 1116
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 5 cut(s) 296, 464, 1849, 1925, 2028
BseMI GCAATG 2 cut(s) 51, 1462
BseMII CTCAG 2 cut(s) 364, 1005
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 1420
Bsh1236I CGCG 1 cut(s) 1952
BshFI GGCC 4 cut(s) 50, 147, 738, 1326
BshTI ACCGGT 1 cut(s) 779
BshVI ATCGAT 1 cut(s) 1271
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 3 cut(s) 133, 780, 1741
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 5 cut(s) 296, 464, 1849, 1925, 2028
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 459
BsmI GAATGC 2 cut(s) 19, 1994
BsnI GGCC 4 cut(s) 50, 147, 738, 1326
Bso31I GGTCTC 1 cut(s) 525
BsoBI CYCGRG 1 cut(s) 527
Bsp120I GGGCCC 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 564, 740
Bsp143I GATC 5 cut(s) 346, 640, 812, 835, 862
Bsp19I CCATGG 1 cut(s) 883
Bsp68I TCGCGA 1 cut(s) 1952
BspACI CCGC 3 cut(s) 1482, 1616, 1901
BspANI GGCC 4 cut(s) 50, 147, 738, 1326
BspCNI CTCAG 2 cut(s) 363, 1006
BspDI ATCGAT 1 cut(s) 1271
BspFNI CGCG 1 cut(s) 1952
BspLI GGNNCC 2 cut(s) 447, 738
BspPI GGATC 4 cut(s) 354, 648, 820, 843
BspQI GCTCTTC 2 cut(s) 132, 552
BspTI CTTAAG 2 cut(s) 292, 491
BspTNI GGTCTC 1 cut(s) 525
BsrDI GCAATG 2 cut(s) 51, 1462
BsrFI RCCGGY 1 cut(s) 779
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 2 cut(s) 883, 1282
BssMI GATC 5 cut(s) 346, 640, 812, 835, 862
BssT1I CCWWGG 2 cut(s) 883, 1282
Bst2UI CCWGG 2 cut(s) 47, 1920
Bst4CI ACNGT 2 cut(s) 1259, 1362
Bst6I CTCTTC 2 cut(s) 132, 552
BstAFI CTTAAG 2 cut(s) 292, 491
BstC8I GCNNGC 4 cut(s) 123, 220, 1457, 1774
BstDEI CTNAG 6 cut(s) 350, 671, 850, 859, 1014, 1787
BstDSI CCRYGG 1 cut(s) 883
BstF5I GGATG 2 cut(s) 160, 1116
BstFNI CGCG 1 cut(s) 1952
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 5 cut(s) 349, 643, 815, 838, 865
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 5 cut(s) 346, 640, 812, 835, 862
BstMWI GCNNNNNNNGC 3 cut(s) 735, 855, 1182
BstNI CCWGG 2 cut(s) 47, 1920
BstNSI RCATGY 3 cut(s) 125, 222, 1009
BstSCI CCNGG 2 cut(s) 45, 1918
BstSFI CTRYAG 1 cut(s) 1258
BstSLI GKGCMC 1 cut(s) 740
BstUI CGCG 1 cut(s) 1952
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 3 cut(s) 927, 1017, 1698
BstX2I RGATCY 4 cut(s) 346, 640, 835, 862
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 4 cut(s) 346, 640, 835, 862
Bsu15I ATCGAT 1 cut(s) 1271
BsuRI GGCC 4 cut(s) 50, 147, 738, 1326
BsuTUI ATCGAT 1 cut(s) 1271
BtgI CCRYGG 1 cut(s) 883
BtsCI GGATG 2 cut(s) 160, 1116
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 1 cut(s) 963
BtuMI TCGCGA 1 cut(s) 1952
Cac8I GCNNGC 4 cut(s) 123, 220, 1457, 1774
CfoI GCGC 1 cut(s) 956
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 5 cut(s) 446, 736, 737, 1426, 1895
ClaI ATCGAT 1 cut(s) 1271
CspAI ACCGGT 1 cut(s) 779
CviAII CATG 9 cut(s) 122, 219, 239, 884, 1006, 1217, 1317, 1418, 1705
DdeI CTNAG 6 cut(s) 350, 671, 850, 859, 1014, 1787
DpnI GATC 5 cut(s) 348, 642, 814, 837, 864
DpnII GATC 5 cut(s) 346, 640, 812, 835, 862
EaeI YGGCCR 2 cut(s) 48, 1324
Eam1104I CTCTTC 2 cut(s) 132, 552
EarI CTCTTC 2 cut(s) 132, 552
EciI GGCGGA 1 cut(s) 1605
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 883, 1282
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 564, 740
Eco31I GGTCTC 1 cut(s) 525
Eco32I GATATC 1 cut(s) 1746
Eco47I GGWCC 3 cut(s) 446, 1426, 1895
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 1710, 1832
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 1827
EcoRII CCWGG 2 cut(s) 45, 1918
EcoRV GATATC 1 cut(s) 1746
EcoT14I CCWWGG 2 cut(s) 883, 1282
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 564, 740
ErhI CCWWGG 2 cut(s) 883, 1282
FaeI CATG 9 cut(s) 125, 222, 242, 887, 1009, 1220, 1320, 1421, 1708
FaqI GGGAC 1 cut(s) 459
FatI CATG 9 cut(s) 121, 218, 238, 883, 1005, 1216, 1316, 1417, 1704
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 2 cut(s) 167, 1123
FriOI GRGCYC 2 cut(s) 564, 740
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 3 cut(s) 549, 1406, 1662
GlaI GCGC 1 cut(s) 955
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 4 cut(s) 50, 147, 738, 1326
HapII CCGG 3 cut(s) 133, 780, 1741
HhaI GCGC 1 cut(s) 956
Hin1II CATG 9 cut(s) 125, 222, 242, 887, 1009, 1220, 1320, 1421, 1708
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HincII GTYRAC 2 cut(s) 1066, 1279
HindII GTYRAC 2 cut(s) 1066, 1279
HindIII AAGCTT 3 cut(s) 494, 913, 1682
HinfI GANTC 9 cut(s) 158, 379, 403, 685, 757, 898, 1496, 1947, 1987
HpaII CCGG 3 cut(s) 133, 780, 1741
HphI GGTGA 2 cut(s) 235, 311
Hpy166II GTNNAC 4 cut(s) 629, 1066, 1279, 1895
Hpy188I TCNGA 5 cut(s) 649, 679, 1015, 1653, 2065
Hpy8I GTNNAC 4 cut(s) 629, 1066, 1279, 1895
HpyAV CCTTC 7 cut(s) 321, 362, 1039, 1254, 1399, 1919, 2048
HpyCH4III ACNGT 2 cut(s) 1259, 1362
HpyF10VI GCNNNNNNNGC 3 cut(s) 735, 855, 1182
HpyF3I CTNAG 6 cut(s) 350, 671, 850, 859, 1014, 1787
Hsp92II CATG 9 cut(s) 125, 222, 242, 887, 1009, 1220, 1320, 1421, 1708
HspAI GCGC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 346, 640, 812, 835, 862
LguI GCTCTTC 2 cut(s) 132, 552
LmnI GCTCC 2 cut(s) 92, 1093
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 3 cut(s) 1042, 1101, 2056
MaeI CTAG 3 cut(s) 549, 1406, 1662
MaeIII GTNAC 3 cut(s) 241, 1700, 1833
MalI GATC 5 cut(s) 348, 642, 814, 837, 864
MboI GATC 5 cut(s) 346, 640, 812, 835, 862
MboII GAAGA 7 cut(s) 119, 569, 927, 1017, 1703, 1720, 1836
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 4 cut(s) 346, 640, 835, 862
MhlI GDGCHC 2 cut(s) 564, 740
MlsI TGGCCA 2 cut(s) 50, 1326
MluNI TGGCCA 2 cut(s) 50, 1326
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 4 cut(s) 61, 114, 1088, 1695
Mox20I TGGCCA 2 cut(s) 50, 1326
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 2 cut(s) 50, 1326
MseI TTAA 7 cut(s) 293, 492, 1346, 1374, 1778, 1857, 2046
MslI CAYNNNNRTG 1 cut(s) 1709
Msp20I TGGCCA 2 cut(s) 50, 1326
MspA1I CMGCKG 1 cut(s) 1903
MspCI CTTAAG 2 cut(s) 292, 491
MspI CCGG 3 cut(s) 133, 780, 1741
MspR9I CCNGG 2 cut(s) 47, 1920
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 2 cut(s) 19, 1994
MvaI CCWGG 2 cut(s) 47, 1920
MvnI CGCG 1 cut(s) 1952
MwoI GCNNNNNNNGC 3 cut(s) 735, 855, 1182
NcoI CCATGG 1 cut(s) 883
NdeII GATC 5 cut(s) 346, 640, 812, 835, 862
NlaIII CATG 9 cut(s) 125, 222, 242, 887, 1009, 1220, 1320, 1421, 1708
NlaIV GGNNCC 2 cut(s) 447, 738
NmeAIII GCCGAG 1 cut(s) 2067
NmuCI GTSAC 1 cut(s) 241
NruI TCGCGA 1 cut(s) 1952
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 3 cut(s) 125, 222, 1009
PaeI GCATGC 2 cut(s) 125, 222
PceI AGGCCT 1 cut(s) 147
PciI ACATGT 1 cut(s) 1005
PciSI GCTCTTC 2 cut(s) 132, 552
PctI GAATGC 2 cut(s) 19, 1994
PfeI GAWTC 8 cut(s) 158, 379, 685, 757, 898, 1496, 1947, 1987
PfoI TCCNGGA 1 cut(s) 1918
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PpuMI RGGWCCY 1 cut(s) 446
PscI ACATGT 1 cut(s) 1005
PsiI TTATAA 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 45, 1918
PspGI CCWGG 2 cut(s) 45, 1918
PspN4I GGNNCC 2 cut(s) 447, 738
PspOMI GGGCCC 1 cut(s) 736
PspPI GGNCC 5 cut(s) 446, 736, 737, 1426, 1895
PspPPI RGGWCCY 1 cut(s) 446
PsuI RGATCY 4 cut(s) 346, 640, 835, 862
RruI TCGCGA 1 cut(s) 1952
RseI CAYNNNNRTG 1 cut(s) 1709
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 2 cut(s) 132, 552
SaqAI TTAA 7 cut(s) 293, 492, 1346, 1374, 1778, 1857, 2046
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 5 cut(s) 346, 640, 812, 835, 862
Sau96I GGNCC 5 cut(s) 446, 736, 737, 1426, 1895
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 47, 1920
SduI GDGCHC 2 cut(s) 564, 740
SfaNI GCATC 3 cut(s) 1042, 1101, 2056
SfcI CTRYAG 1 cut(s) 1258
SinI GGWCC 3 cut(s) 446, 1426, 1895
SmiMI CAYNNNNRTG 1 cut(s) 1709
SmlI CTYRAG 2 cut(s) 292, 491
SmoI CTYRAG 2 cut(s) 292, 491
SphI GCATGC 2 cut(s) 125, 222
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 3 cut(s) 1482, 1616, 1901
SspI AATATT 1 cut(s) 1444
SspMI CTAG 3 cut(s) 549, 1406, 1662
SstI GAGCTC 1 cut(s) 564
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 45, 1918
StyI CCWWGG 2 cut(s) 883, 1282
TaaI ACNGT 2 cut(s) 1259, 1362
TaqI TCGA 3 cut(s) 908, 998, 1271
TfiI GAWTC 8 cut(s) 158, 379, 685, 757, 898, 1496, 1947, 1987
Tru1I TTAA 7 cut(s) 293, 492, 1346, 1374, 1778, 1857, 2046
Tru9I TTAA 7 cut(s) 293, 492, 1346, 1374, 1778, 1857, 2046
TscAI CASTG 1 cut(s) 963
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 379, 887, 1406, 1721
TspGWI ACGGA 1 cut(s) 1821
TspRI CASTG 1 cut(s) 963
Vha464I CTTAAG 2 cut(s) 292, 491
VpaK11BI GGWCC 3 cut(s) 446, 1426, 1895
XapI RAATTY 7 cut(s) 1123, 1138, 1210, 1611, 1755, 1827, 2035
XbaI TCTAGA 1 cut(s) 1661
XceI RCATGY 3 cut(s) 125, 222, 1009
XcmI CCANNNNNNNNNTGG 1 cut(s) 1420
XspI CTAG 3 cut(s) 549, 1406, 1662
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.