FvH4_7g14070

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
12504955 .. 12511463
6509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14070.t1

Sequence Viewer

Length: 4050 bp
ATGGAGTTGGGAAGGTGGCTCATACATGCTTGTACAATATCAATTGTGCTTCTTCTGCGTATCAACGCTTCCTTATCCCTCGGTCACCACCATGCTAACATGACGGCGAGATGCATTGAGAGGGAGAGGGATGCACTTCTTGCTATCAAAGGAGACTTGGTGGATGAATACAACCTGCTCTCTTCGTGGGGAAGGGAAGACTGTTGCGGATGGGAGAGAGTCCATTGTGATCCCCACACTGGCCATGTTATTCAACTTCATCTTGGAGGAGTGTTGGAGGTGTCGCGACGTGGACTTGATCGACTGGAGATGTACAATGCAAGGTCAGGATATATGTACTTTCCGGGGTTGTTTTATCTGCAAGGTCAGGATATATTGAAAAACTTCGGAGGTCAGGTTAGTCCTAAAATCATTGAGTTGCAGTATTTGGAATATTTGGACCTCAGTCTCAATTTTTTCAATGCCACCCAAATTCCAACACTCATTTGTTCTCTGTCCAACTTAAGACACCTAGATCTCCATTCCAATCACCTCACCGGGAGCAAAATTCCAAAACTCATTGGTAATCTGACCAATTTAAGGTATCTAGATCTCTCTTATATTGGCTTCAGTGGTGAAATTCCAACAACAATGTGTTCTCTGTCTAATTTAAGACACCTAGATCTCTATGATAATGACCTAAACGGGAGCAATATTCTAGAGCTCATTGGTAATCTAACCAATTTAAGATATCTAGATCTCTCTGAGAATTCCTTGGGTGATGAAACTCCAGTTCCATATCATCAACTTGGAAACCTTACTCACTTGCAATATCTCAATCTCGGGTATACTTACCACACTCATGTTGTAGAAAACCTCAATTGGCTCCCACGTCTTTCTTCTTTGAAATACCTAGACTTGAGTTGGACCAATCTGAGTAAGGTGTCTGATTGGCTGGACACAGTAAACAAGCTCCCCAATCTAAAAAACTTGACACTGTATGAATGTGATCTTCCTCCTCCAATTCTTTCTACTCTTTCTCACATCAATTCTTCCAATTCTCTTGTTCATGTTGATTTGTCTGGTAATGTTATCACTTCTTCGATATTCAAATGGTTATGCAACTACAACACCACCCTTGCATATCTTGACCTTTCATTCACTCAATTAAGTGGTTTGATTCCTGATGTTTTCATAAACATGAGATCACTGAAAAGTCTTTACCTCATTGTCAACCAGTTAAGTGTTTCGATTACCTCTCATGTTTTCAAAACCATGAGCTCACTTGAACATCTATCACTCTCTTACAACCAATTAAGTGTTTTGAATCCCAATGCTTTCACAAACATGAGCTCACTTGCATTTCTTGACCTCTCTTCCAACCGATTAAGCGGTTTGAATCCCAATGCTTTCACAAACATGAGCTCACTTGGATATCTTGACCTCTCTTCCAACCGATTAAGAGGTTTGAATCCCAATGCTTTCTCAAACATGAGCTCACTTGCATTTCTTGACCTCTCTTCCAACCGATTAAGCGGTTTGAATCCCAATGCTTTCGCAAACATGAGCTCACTTGCATGTCTTTCCCTCTCTTGCAACCGATTAAGCGGTTTGAATCCCAATGCTTTCGCAAACATGAGCTCACTTGCATATCTTGACCTCTCTTCCAACCAGTTAAGCGGTTTGAATCCCAATGCTTTCGCAAACATGAGCTCACTTGCATATCTTTCCCTCTCTGATAACTCACTTGAAGGAGAGATCCCAACATCCATTGCCCAGTTATGCAGTTTGCAACATCTATTCATGTCAGGTTGTAATCTGACTGGACAACTTTCTGAGTTCGTTCGAAGATGGTCCGCATGTCCTCAAAACCCAATCCGGTCTTTATATCTTTCTAATAATGATCTTGCTGGGTCATTTCCTGATTTTACAAACTTTTCATCATTGGAGAGCTTAGATCTCTCTGGAAATAAGTTGAGCGGAATGGTTCCGGATAGTATTGGAAAGTTGTCTTCTTTGACATACTTATCTGTCGATGAAAACCAATTAAGATGGACCATACCTGAAAGTATTGGGGAACTATCCCGTTTATATTACTTGAGTCTCTCAGGAAATCTTCTAAGCGGAAGAATTCCAGAAAGTATTGGGAAACTCTCATCATTGGCCTATTTAGATCTTTCAAAAAATCAATTAAGCGAAAGAATACCAGATAGTGTTGGGCAATTGTCAATGTTGAGAGCATTGAATCTACAAGAAAATCTATTAAGCCAAAGAATACCGGAACAAATTGGGAAAATGTCATCGTTGGAAAGCTTAGATCTCTCTAGAAATTGGTTAAGGGAAAGAATACCTCAAAGTGTTGGGCAATTGTCCAATTTGGGCTATATAAATCTTAGTATGAATCATTTGGAAGGAGAGATTTCGGAAATTTATTTCACAAAACTCTCCATTTTAGGTTCCTTGGATTTATCCTATAACTCAAGACTAGAATTCAATGTCACTTCTGATTGGATTCCTCCTTTTAATTTGTCTCATCTGAGTTTGAGGTTCTGTAAGGCGGGGCCGAATTTCCCAAAATGGCTCCAAACCCAAAATGGTCTTTTTGACATCGACATGTCTTTTGCTAACATTTCAGATGTCCTTCCAAGTTGGTTCTGGGGTGTCTTTGGTGGCACTCGAACTATAGATTTCTCTAACAATCAAATCAGAGGAACATTAGGGAGTTCAAAGATTGTATCATTTAGTGGATTTGAAGTCCGAATTAGTTCAAACCGATTGGACGGTCTAGTACCCTCATTTCTATCAAATGCTTCATATTTGGATCTCTCTGATAATAAGTTTTCAGAAATGACGTCTTTCTTGTGCTCTTCAAATGTTAAAGTCTCAAAATTTCTTGATCTCTCCAAAAACCATATTGCCGGAGAAGTTCCAGATTGTTGGAGACAATGGGCCAATCTACAACTTCTCGATTTGAGTTTCAATGCTTTTTCTGGAAAAATCCCACCTAGTATTGGCTATATACATGGAATCAAAACATTGAAATTAAGGAGCAACAAACTTGTGGGAGCGTTGCCTTCATCCTTGAAGAATTGTACGAGCTTAAATGTTATTGATCTTGGGAACAATCAGCTTTCAAGTTCAGTGCCTGATTGGATAGGGGCTAGTCTTCCCGATTTGGTTATTCTTATGCTTCAGTTTAATCAGCTTAGTGGAAGTTTGCCTTCACAGTTATGTCACCTACCACATCTTCAAATATTGGATGTCTCTGTGAATGAAATCTCGGGAACTATACCAAAATGCCTCAACAATTTGACTTCTTTGGCACAAGAAGGAAATTCAAATCTAACCATCAGGCATTCTTTTAATATATCAGAGGCCGAACCACCGATGACTTCTCTTTATTATGAAGATGATGCAACATTCATGTGGAAAGGAACATTGGCTTCATACAAAAGCACCTTGGGACTAGTCAAGAGAATTGATCTCTCAAGCAACAGATTAACTGGGGAGATTCCAAGTGAAATCACTTACCTTGTTGGATTGGTTTCTCTGAACCTGTCAAGGAACAGTTTAAGTGGACAAATCCCTCTAGATATCGGAAAGTTGAAGTCATTAGATTCACTTGATTTGTCAAGAAACAAGATACATGGTGGAATCCCGACAAGCCTTGCTCATATAGATAGACTTGGCACCATGGATTTGTCATATAACAACTTGTCTGGTGAAATTCCAACTGGCACTCAGCTCCAAGGCTTTAATGCCTCATCTTATATTGAAAATCCTTGGTTGTGCGGACTTCCACTTCATGTTTGTGATCCAGAGGGGACAGGTCGACCTAATGTCTCAAGTGGTGAAGATGATGCAAATGAGCTCATCACGCAAGGGTTTTACATAAGTCTGGGACTTGGATTTGCTGTTGGATTCTGGGGAATCTGTGGAAGTTTGATATTCAAGAAGTCATGGAGATATGCATACTACAATTTCTTGAATGCTTCAAATGATTGGCTTTATGTGAAGGTAGTTTTGATCAGACGACAATTAAAGGATTTGCTCAATAGACAACAATCTTAA

Protein Analysis

1350

Amino Acids

149.72

Weight (kDa)

5.92

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 77 1.3e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 160 - 425 4.2e-18 Leucine-rich repeat region
LRR_Zer-1 PF25013 186 - 252 3.3e-06 Zer-1-like, Leucine-rich repeats
LRR_5 PF13306 408 - 518 3e-10 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 409 - 456 5.1e-12 Leucine rich repeat
LRR_14 PF23598 441 - 673 2.5e-12 Leucine-rich repeat region
LRR_8 PF13855 449 - 504 4e-15 Leucine rich repeat
LRR_5 PF13306 485 - 574 9.8e-08 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 497 - 552 1.2e-14 Leucine rich repeat
LRR_8 PF13855 545 - 600 5.1e-11 Leucine rich repeat
LRR_8 PF13855 619 - 676 9.6e-09 Leucine rich repeat
LRR_14 PF23598 683 - 856 2.6e-20 Leucine-rich repeat region
LRR_8 PF13855 689 - 748 8.6e-08 Leucine rich repeat
LRR_8 PF13855 1003 - 1062 3.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45420 FvH4_4g14031 FvH4_5g20780 FvH4_6g28530 FvH4_7g14020 FvH4_7g14030 FvH4_7g14040 FvH4_7g14050 FvH4_7g14060 FvH4_7g14070 FvH4_7g14090 FvH4_7g14110 FvH4_7g14140 FvH4_7g14450
malus_domestica MD00G1189100.v1.1 MD01G1018600.v1.1 MD01G1053800.v1.1 MD01G1053900.v1.1 MD01G1054000.v1.1 MD01G1054100.v1.1 MD01G1056700.v1.1 MD01G1057000.v1.1 MD01G1057300.v1.1 MD01G1057400.v1.1 MD01G1061600.v1.1 MD01G1061800.v1.1 MD01G1061900.v1.1 MD01G1062000.v1.1 MD01G1062400.v1.1 MD01G1062500.v1.1 MD01G1063200.v1.1 MD01G1063300.v1.1 MD01G1063400.v1.1 MD01G1063700.v1.1 MD01G1063900.v1.1 MD01G1064200.v1.1 MD01G1064300.v1.1 MD01G1064400.v1.1 MD01G1064600.v1.1 MD01G1064700.v1.1 MD01G1181100.v1.1 MD01G1212300.v1.1 MD01G1212500.v1.1 MD01G1212600.v1.1 MD02G1271900.v1.1 MD07G1136500.v1.1 MD07G1139300.v1.1 MD07G1141200.v1.1 MD07G1144700.v1.1 MD08G1144200.v1.1 MD14G1186300.v1.1 MD14G1186500.v1.1 MD14G1186700.v1.1 MD14G1186800.v1.1 MD15G1351300.v1.1 MD15G1439500.v1.1
prunus_persica Prupe.1G067000_v2.0.a1 Prupe.2G077400_v2.0.a1 Prupe.2G077700_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078100_v2.0.a1 Prupe.2G078600_v2.0.a1 Prupe.2G078800_v2.0.a1 Prupe.2G099600_v2.0.a1 Prupe.2G099700_v2.0.a1 Prupe.2G155100_v2.0.a1 Prupe.2G155500_v2.0.a1 Prupe.2G155600_v2.0.a1 Prupe.2G155800_v2.0.a1 Prupe.2G155900_v2.0.a1 Prupe.2G156100_v2.0.a1 Prupe.2G166100_v2.0.a1 Prupe.2G166300_v2.0.a1 Prupe.2G167500_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167600_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G167700_v2.0.a1 Prupe.2G168400_v2.0.a1 Prupe.2G168700_v2.0.a1 Prupe.2G168800_v2.0.a1 Prupe.2G169000_v2.0.a1 Prupe.2G169100_v2.0.a1 Prupe.2G169200_v2.0.a1 Prupe.2G169500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G171500_v2.0.a1 Prupe.2G172300_v2.0.a1 Prupe.2G304800_v2.0.a1 Prupe.4G264800_v2.0.a1 Prupe.4G265000_v2.0.a1 Prupe.5G051900_v2.0.a1 Prupe.5G052000_v2.0.a1
pyrus_communis pycom01g08380 pycom01g08430 pycom01g08490 pycom01g08520 pycom01g08540 pycom01g08550 pycom01g08600 pycom01g08630 pycom01g08660 pycom01g08720 pycom01g09180 pycom01g09200 pycom01g09210 pycom01g09270 pycom01g09280 pycom01g09300 pycom01g09380 pycom01g19110 pycom01g22260 pycom01g22310 pycom01g22330 pycom01g22350 pycom01g22360 pycom02g23250 pycom07g13420 pycom07g13670 pycom07g13900 pycom07g13910 pycom07g13960 pycom07g13970 pycom07g25680 pycom11g22830
rosa_chinensis RchiOBHm_Chr0c22g0500431 RchiOBHm_Chr0c22g0500441 RchiOBHm_Chr0c22g0500561 RchiOBHm_Chr0c22g0500571 RchiOBHm_Chr0c22g0500611 RchiOBHm_Chr0c22g0500621 RchiOBHm_Chr0c22g0500631 RchiOBHm_Chr0c22g0500681 RchiOBHm_Chr1g0348221 RchiOBHm_Chr1g0348251 RchiOBHm_Chr1g0352861 RchiOBHm_Chr1g0352871 RchiOBHm_Chr1g0352891 RchiOBHm_Chr1g0352901 RchiOBHm_Chr1g0354671 RchiOBHm_Chr1g0354701 RchiOBHm_Chr1g0354711 RchiOBHm_Chr1g0354751 RchiOBHm_Chr1g0354761 RchiOBHm_Chr1g0354841 RchiOBHm_Chr1g0354851 RchiOBHm_Chr1g0354881 RchiOBHm_Chr1g0354971 RchiOBHm_Chr1g0354981 RchiOBHm_Chr1g0354991 RchiOBHm_Chr1g0355001 RchiOBHm_Chr1g0355011 RchiOBHm_Chr1g0355021 RchiOBHm_Chr1g0355861 RchiOBHm_Chr1g0379671 RchiOBHm_Chr1g0379681 RchiOBHm_Chr2g0096591 RchiOBHm_Chr2g0132821 RchiOBHm_Chr3g0454901 RchiOBHm_Chr3g0472711 RchiOBHm_Chr4g0400791 RchiOBHm_Chr5g0069481 RchiOBHm_Chr5g0069511 RchiOBHm_Chr5g0069551 RchiOBHm_Chr6g0254651 RchiOBHm_Chr6g0259721 RchiOBHm_Chr7g0205911 RchiOBHm_Chr7g0206401 RchiOBHm_Chr7g0206571 RchiOBHm_Chr7g0206581 RchiOBHm_Chr7g0206621 RchiOBHm_Chr7g0206631 RchiOBHm_Chr7g0206641 RchiOBHm_Chr7g0206681 RchiOBHm_Chr7g0206691 RchiOBHm_Chr7g0206751 RchiOBHm_Chr7g0206761 RchiOBHm_Chr7g0206851 RchiOBHm_Chr7g0206911 RchiOBHm_Chr7g0206921 RchiOBHm_Chr7g0207001 RchiOBHm_Chr7g0207011 RchiOBHm_Chr7g0207031 RchiOBHm_Chr7g0207101 RchiOBHm_Chr7g0207161 RchiOBHm_Chr7g0207201 RchiOBHm_Chr7g0207271 RchiOBHm_Chr7g0207301 RchiOBHm_Chr7g0207311 RchiOBHm_Chr7g0207421 RchiOBHm_Chr7g0207481 RchiOBHm_Chr7g0207491 RchiOBHm_Chr7g0207501 RchiOBHm_Chr7g0207521 RchiOBHm_Chr7g0207531 RchiOBHm_Chr7g0207561 RchiOBHm_Chr7g0207571 RchiOBHm_Chr7g0207581 RchiOBHm_Chr7g0207601 RchiOBHm_Chr7g0207621 RchiOBHm_Chr7g0207631 RchiOBHm_Chr7g0207651 RchiOBHm_Chr7g0207661 RchiOBHm_Chr7g0207711 RchiOBHm_Chr7g0207761 RchiOBHm_Chr7g0207801 RchiOBHm_Chr7g0208821 RchiOBHm_Chr7g0208831 RchiOBHm_Chr7g0208841 RchiOBHm_Chr7g0213601 RchiOBHm_Chr7g0215981 RchiOBHm_Chr7g0216021
rosa_laevigata RLG00000003193 RLG00000003194 RLG00000003287 RLG00000003288 RLG00000003289 RLG00000003293 RLG00000003294 RLG00000003295 RLG00000003297 RLG00000003299 RLG00000003301 RLG00000003327 RLG00000003347 RLG00000016653 RLG00000018642 RLG00000018643 RLG00000019285 RLG00000022542 RLG00000026368 RLG00000026371 RLG00000028124 RLG00000028125 RLG00000028183 RLG00000028184 RLG00000028185 RLG00000028188 RLG00000028673 RLG00000029267 RLG00000029325 RLG00000029674 RLG00000032883 RLG00000036055 RLG00000036058 RLG00000036065 RLG00000036068 RLG00000036071 RLG00000036072 RLG00000036075 RLG00000036076
rosa_multiflora Rmu_co8250183.1_g000001 Rmu_co8271981.1_g000001 Rmu_co8410829.1_g000001 Rmu_co8432879.1_g000001 Rmu_co8441941.1_g000001 Rmu_sc0000076.1_g000031 Rmu_sc0000738.1_g000038 Rmu_sc0000848.1_g000003 Rmu_sc0000848.1_g000014 Rmu_sc0000848.1_g000015 Rmu_sc0000848.1_g000016 Rmu_sc0001264.1_g000001 Rmu_sc0002284.1_g000018 Rmu_sc0002356.1_g000011 Rmu_sc0003020.1_g000003 Rmu_sc0003115.1_g000001 Rmu_sc0003115.1_g000002 Rmu_sc0003115.1_g000003 Rmu_sc0003115.1_g000004 Rmu_sc0003115.1_g000005 Rmu_sc0003115.1_g000008 Rmu_sc0003115.1_g000010 Rmu_sc0003115.1_g000011 Rmu_sc0003115.1_g000014 Rmu_sc0003565.1_g000002 Rmu_sc0003652.1_g000013 Rmu_sc0003652.1_g000015 Rmu_sc0003652.1_g000016 Rmu_sc0003652.1_g000019 Rmu_sc0003940.1_g000001 Rmu_sc0003940.1_g000004 Rmu_sc0003940.1_g000009 Rmu_sc0004084.1_g000010 Rmu_sc0004705.1_g000021 Rmu_sc0004972.1_g000007 Rmu_sc0004987.1_g000002 Rmu_sc0004987.1_g000006 Rmu_sc0005065.1_g000018 Rmu_sc0005065.1_g000029 Rmu_sc0005391.1_g000002 Rmu_sc0005633.1_g000003 Rmu_sc0005633.1_g000008 Rmu_sc0006632.1_g000014 Rmu_sc0006632.1_g000018 Rmu_sc0006681.1_g000010 Rmu_sc0006681.1_g000011 Rmu_sc0006733.1_g000003 Rmu_sc0007385.1_g000005 Rmu_sc0007385.1_g000007 Rmu_sc0007385.1_g000009 Rmu_sc0007385.1_g000016 Rmu_sc0007645.1_g000002 Rmu_sc0007645.1_g000003 Rmu_sc0007645.1_g000022 Rmu_sc0007828.1_g000008 Rmu_sc0008509.1_g000003 Rmu_sc0008509.1_g000015 Rmu_sc0008509.1_g000016 Rmu_sc0008509.1_g000020 Rmu_sc0008509.1_g000030 Rmu_sc0008509.1_g000041 Rmu_sc0008756.1_g000001 Rmu_sc0008756.1_g000003 Rmu_sc0013028.1_g000002 Rmu_sc0013028.1_g000003 Rmu_sc0013028.1_g000005 Rmu_sc0013160.1_g000001 Rmu_sc0014454.1_g000009 Rmu_sc0014455.1_g000007 Rmu_sc0014659.1_g000004 Rmu_sc0017798.1_g000002 Rmu_sc0017798.1_g000004 Rmu_sc0029608.1_g000001 Rmu_sc0037861.1_g000001 Rmu_sc0038750.1_g000001 Rmu_sc0042995.1_g000001 Rmu_ssc0000161.1_g000017
rosa_roxburghii Rroxscaffold_1G00009180 Rroxscaffold_1G00009190 Rroxscaffold_1G00011450 Rroxscaffold_1G00011480 Rroxscaffold_2G00111660 Rroxscaffold_2G00113570 Rroxscaffold_2G00122140 Rroxscaffold_3G00243730 Rroxscaffold_3G00245750 Rroxscaffold_3G00245760 Rroxscaffold_3G00250220 Rroxscaffold_3G00251160 Rroxscaffold_3G00251270 Rroxscaffold_3G00251280 Rroxscaffold_3G00251300 Rroxscaffold_3G00251340 Rroxscaffold_3G00251350 Rroxscaffold_3G00251390 Rroxscaffold_3G00251400 Rroxscaffold_3G00251560 Rroxscaffold_3G00251570 Rroxscaffold_3G00251870 Rroxscaffold_3G00252200 Rroxscaffold_3G00252210 Rroxscaffold_4G00279970 Rroxscaffold_4G00299970 Rroxscaffold_4G00300760 Rroxscaffold_4G00300780 Rroxscaffold_4G00300810 Rroxscaffold_4G00300850 Rroxscaffold_4G00307080 Rroxscaffold_4G00307100 Rroxscaffold_4G00313990 Rroxscaffold_6G00405080
rosa_rugosa Rorug01G0193600 Rorug01G0193700 Rorug01G0243800 Rorug01G0244000 Rorug01G0244000 Rorug01G0244400 Rorug01G0414300.1 Rorug01G0414500 Rorug01G0414600 Rorug02G0235600 Rorug02G0307900 Rorug02G0583100 Rorug02G0583200 Rorug02G0583300 Rorug05G0398000 Rorug05G0398100 Rorug05G0398200 Rorug05G0580300 Rorug05G0590300 Rorug06G0116000 Rorug06G0116100 Rorug07G0096800 Rorug07G0097100.1 Rorug07G0097200 Rorug07G0098600 Rorug07G0098600 Rorug07G0098700 Rorug07G0099100 Rorug07G0106100 Rorug07G0106200 Rorug07G0106200 Rorug07G0106300 Rorug07G0157600 Rorug07G0157700 Rorug07G0157700 Rorug07G0157800
rosa_samantha Rh1AG255500 Rh1AG256700 Rh1BG225800 Rh1BG226200 Rh1BG230000 Rh1CG195300 Rh1CG238400 Rh1CG238500 Rh1CG238900 Rh1CG239000 Rh1CG239300 Rh1CG239400 Rh1CG239800 Rh1CG240000 Rh1CG240200 Rh1CG240300 Rh1CG244300 Rh1CG406900 Rh1CG407300 Rh1CG407400 Rh2CG343600 Rh2DG383200 Rh3BG205900 Rh4AG404400 Rh4BG415500 Rh5AG455200 Rh5AG455600 Rh5CG497000 Rh5CG497200 Rh7AG228800 Rh7AG230400 Rh7AG230800 Rh7AG231200 Rh7AG231600 Rh7AG231800 Rh7AG232100 Rh7AG241600 Rh7BG236200 Rh7CG238200 Rh7CG239100 Rh7CG243400 Rh7CG244900
rosa_wichuraiana Rw0G023040 Rw1G017780 Rw1G022320 Rw1G022340 Rw1G022410 Rw1G022420 Rw1G022440 Rw1G022460 Rw1G022490 Rw1G022500 Rw1G022530 Rw1G022550 Rw1G022560 Rw1G022600 Rw1G023060 Rw1G038150 Rw1G038160 Rw2G008210 Rw2G022350 Rw2G029290 Rw4G015050 Rw4G019850 Rw5G024060 Rw5G042460 Rw7G019160 Rw7G019460 Rw7G019690 Rw7G019830 Rw7G019860 Rw7G019880 Rw7G019890 Rw7G019930 Rw7G019990 Rw7G020460 Rw7G025100 Rw7G025120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2834
Acc36I ACCTGC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 3668
AccBSI CCGCTC 1 cut(s) 1959
AccI GTMKAC 2 cut(s) 827, 3811
AccII CGCG 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 1969
AclWI GGATC 4 cut(s) 224, 1732, 2808, 3788
AcoI YGGCCR 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 592, 3155
AcyI GRCGYC 1 cut(s) 2831
AfaI GTAC 5 cut(s) 34, 314, 338, 2769, 3073
AfiI CCNNNNNNNGG 3 cut(s) 239, 579, 2990
AflII CTTAAG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 2592
AhdI GACNNNNNGTC 1 cut(s) 3818
AhlI ACTAGT 1 cut(s) 3445
AjiI CACGTC 2 cut(s) 290, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 3401, 3433
Alw26I GTCTC 8 cut(s) 147, 452, 2087, 2514, 2866, 2914, 3247, 3826
AlwI GGATC 4 cut(s) 224, 1732, 2808, 3788
AlwNI CAGNNNCTG 1 cut(s) 3125
Ama87I CYCGRG 2 cut(s) 821, 3259
Aor13HI TCCGGA 1 cut(s) 1969
AoxI GGCC 5 cut(s) 241, 2142, 2540, 2928, 3354
ArsI GACNNNNNNTTYG 2 cut(s) 2582, 2614
Asp700I GAANNNNTTC 2 cut(s) 383, 2743
AspS9I GGNCC 6 cut(s) 439, 906, 1833, 2034, 2540, 2928
AsuC2I CCSGG 2 cut(s) 345, 538
AsuHPI GGTGA 8 cut(s) 77, 521, 526, 626, 770, 3206, 3713, 3842
AsuII TTCGAA 1 cut(s) 1825
AvaI CYCGRG 2 cut(s) 821, 3259
AvaII GGWCC 4 cut(s) 439, 906, 1833, 2034
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 3668
BanII GRGCYC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
BarI GAAGNNNNNNTAC 2 cut(s) 52, 84
BbsI GAAGAC 3 cut(s) 204, 1983, 3137
BccI CCATC 4 cut(s) 204, 1824, 2025, 3335
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 1 cut(s) 4005
BcnI CCSGG 2 cut(s) 345, 538
BcoDI GTCTC 8 cut(s) 147, 452, 2087, 2514, 2866, 2914, 3247, 3826
BcuI ACTAGT 1 cut(s) 3445
BfmI CTRYAG 1 cut(s) 2661
BfrI CTTAAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 183
BglII AGATCT 7 cut(s) 514, 589, 661, 736, 1936, 2152, 2296
Bme1390I CCNGG 2 cut(s) 345, 538
Bme18I GGWCC 4 cut(s) 439, 906, 1833, 2034
BmeRI GACNNNNNGTC 1 cut(s) 3818
BmeT110I CYCGRG 2 cut(s) 821, 3259
BmgBI CACGTC 2 cut(s) 290, 872
BmgT120I GGNCC 6 cut(s) 439, 906, 1833, 2034, 2540, 2928
BmiI GGNNCC 6 cut(s) 866, 1968, 2437, 2541, 2561, 3670
BmrFI CCNGG 2 cut(s) 345, 538
BmrI ACTGGG 2 cut(s) 1750, 3492
BmsI GCATC 4 cut(s) 101, 121, 3382, 3829
BmuI ACTGGG 2 cut(s) 1750, 3492
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 3 cut(s) 204, 1983, 3137
BpmI CTGGAG 2 cut(s) 326, 753
Bpu14I TTCGAA 1 cut(s) 1825
BpuEI CTTGAG 5 cut(s) 919, 2098, 2443, 3451, 3808
BpuMI CCSGG 2 cut(s) 345, 538
BsaHI GRCGYC 1 cut(s) 2831
BsaJI CCNNGG 8 cut(s) 79, 344, 753, 2439, 3438, 3672, 3727, 3761
BsaWI WCCGGW 3 cut(s) 1857, 1969, 2257
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 381, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 579, 2990
Bse1I ACTGG 9 cut(s) 244, 309, 770, 1216, 1651, 1756, 1807, 3487, 3718
Bse3DI GCAATG 1 cut(s) 1749
BseAI TCCGGA 1 cut(s) 1969
BseDI CCNNGG 8 cut(s) 79, 344, 753, 2439, 3438, 3672, 3727, 3761
BseGI GGATG 6 cut(s) 136, 169, 215, 1745, 3056, 3244
BseLI CCNNNNNNNGG 3 cut(s) 239, 579, 2990
BseMI GCAATG 1 cut(s) 1749
BseMII CTCAG 7 cut(s) 457, 735, 905, 1806, 2100, 2507, 3734
BseNI ACTGG 9 cut(s) 244, 309, 770, 1216, 1651, 1756, 1807, 3487, 3718
BseRI GAGGAG 2 cut(s) 282, 987
BseYI CCCAGC 1 cut(s) 1889
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 5 cut(s) 243, 2144, 2542, 2930, 3356
BshNI GGYRCC 1 cut(s) 3668
BsiHKCI CYCGRG 2 cut(s) 821, 3259
BsiSI CCGG 6 cut(s) 344, 537, 1858, 1970, 2258, 2898
BslFI GGGAC 3 cut(s) 3456, 3817, 3894
BslI CCNNNNNNNGG 3 cut(s) 239, 579, 2990
BsmAI GTCTC 8 cut(s) 147, 452, 2087, 2514, 2866, 2914, 3247, 3826
BsmFI GGGAC 3 cut(s) 3456, 3817, 3894
BsmI GAATGC 2 cut(s) 3334, 3973
BsnI GGCC 5 cut(s) 243, 2144, 2542, 2930, 3356
BsoBI CYCGRG 2 cut(s) 821, 3259
Bsp119I TTCGAA 1 cut(s) 1825
Bsp13I TCCGGA 1 cut(s) 1969
Bsp1407I TGTACA 2 cut(s) 32, 312
Bsp19I CCATGG 1 cut(s) 3672
Bsp68I TCGCGA 1 cut(s) 286
BspANI GGCC 5 cut(s) 243, 2144, 2542, 2930, 3356
BspCNI CTCAG 7 cut(s) 456, 736, 906, 1807, 2099, 2508, 3733
BspEI TCCGGA 1 cut(s) 1969
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 6 cut(s) 866, 1968, 2437, 2541, 2561, 3670
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 4 cut(s) 224, 1732, 2808, 3788
BspQI GCTCTTC 1 cut(s) 2851
BspT104I TTCGAA 1 cut(s) 1825
BspT107I GGYRCC 1 cut(s) 3668
BspTI CTTAAG 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 1959
BsrDI GCAATG 1 cut(s) 1749
BsrGI TGTACA 2 cut(s) 32, 312
BsrI ACTGG 9 cut(s) 244, 309, 770, 1216, 1651, 1756, 1807, 3487, 3718
BssECI CCNNGG 8 cut(s) 79, 344, 753, 2439, 3438, 3672, 3727, 3761
BssNAI GTATAC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 2831
BssT1I CCWWGG 6 cut(s) 753, 2439, 3438, 3672, 3727, 3761
Bst1107I GTATAC 1 cut(s) 828
Bst4CI ACNGT 6 cut(s) 203, 943, 978, 2762, 3207, 3548
Bst6I CTCTTC 6 cut(s) 187, 1360, 1432, 1504, 1648, 2851
BstACI GRCGYC 1 cut(s) 2831
BstAFI CTTAAG 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 2 cut(s) 32, 312
BstBI TTCGAA 1 cut(s) 1825
BstDSI CCRYGG 1 cut(s) 3672
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 6 cut(s) 136, 169, 215, 1745, 3056, 3244
BstFNI CGCG 1 cut(s) 286
BstMAI GTCTC 8 cut(s) 147, 452, 2087, 2514, 2866, 2914, 3247, 3826
BstMWI GCNNNNNNNGC 3 cut(s) 55, 140, 3856
BstNSI RCATGY 4 cut(s) 29, 1560, 1842, 2596
BstPAI GACNNNNGTC 1 cut(s) 444
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 343, 536
BstSFI CTRYAG 1 cut(s) 2661
BstUI CGCG 1 cut(s) 286
BstV2I GAAGAC 3 cut(s) 204, 1983, 3137
BstX2I RGATCY 9 cut(s) 514, 589, 661, 736, 1737, 1936, 2152, 2296, 2800
BstXI CCANNNNNNTGG 1 cut(s) 2916
BstYI RGATCY 9 cut(s) 514, 589, 661, 736, 1737, 1936, 2152, 2296, 2800
BstZ17I GTATAC 1 cut(s) 828
BsuRI GGCC 5 cut(s) 243, 2144, 2542, 2930, 3356
BtgI CCRYGG 1 cut(s) 3672
BtrI CACGTC 2 cut(s) 290, 872
BtsCI GGATG 6 cut(s) 136, 169, 215, 1745, 3056, 3244
BtsIMutI CAGTG 5 cut(s) 237, 616, 974, 1187, 3126
BtuMI TCGCGA 1 cut(s) 286
BveI ACCTGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 3125
Cfr13I GGNCC 6 cut(s) 439, 906, 1833, 2034, 2540, 2928
Csp6I GTAC 5 cut(s) 33, 313, 337, 2768, 3072
CviQI GTAC 5 cut(s) 33, 313, 337, 2768, 3072
DriI GACNNNNNGTC 1 cut(s) 3818
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 6 cut(s) 187, 1360, 1432, 1504, 1648, 2851
Eam1105I GACNNNNNGTC 1 cut(s) 3818
EarI CTCTTC 6 cut(s) 187, 1360, 1432, 1504, 1648, 2851
Ecl136II GAGCTC 9 cut(s) 703, 1260, 1332, 1404, 1476, 1548, 1620, 1692, 3850
Eco130I CCWWGG 6 cut(s) 753, 2439, 3438, 3672, 3727, 3761
Eco24I GRGCYC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
Eco32I GATATC 3 cut(s) 731, 1415, 3574
Eco47I GGWCC 4 cut(s) 439, 906, 1833, 2034
Eco53kI GAGCTC 9 cut(s) 703, 1260, 1332, 1404, 1476, 1548, 1620, 1692, 3850
Eco57I CTGAAG 2 cut(s) 592, 3155
Eco88I CYCGRG 2 cut(s) 821, 3259
Eco91I GGTNACC 1 cut(s) 83
EcoICRI GAGCTC 9 cut(s) 703, 1260, 1332, 1404, 1476, 1548, 1620, 1692, 3850
EcoO65I GGTNACC 1 cut(s) 83
EcoRI GAATTC 3 cut(s) 748, 2109, 2468
EcoRV GATATC 3 cut(s) 731, 1415, 3574
EcoT14I CCWWGG 6 cut(s) 753, 2439, 3438, 3672, 3727, 3761
EcoT22I ATGCAT 2 cut(s) 116, 3952
EcoT38I GRGCYC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
ErhI CCWWGG 6 cut(s) 753, 2439, 3438, 3672, 3727, 3761
FalI AAGNNNNNCTT 2 cut(s) 3184, 3216
FaqI GGGAC 3 cut(s) 3456, 3817, 3894
FauI CCCGC 1 cut(s) 2530
FbaI TGATCA 1 cut(s) 4005
FblI GTMKAC 2 cut(s) 827, 3811
FokI GGATG 6 cut(s) 143, 176, 222, 1732, 3043, 3251
FriOI GRGCYC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
GsaI CCCAGC 1 cut(s) 1893
GsuI CTGGAG 2 cut(s) 326, 753
HaeIII GGCC 5 cut(s) 243, 2144, 2542, 2930, 3356
HapII CCGG 6 cut(s) 344, 537, 1858, 1970, 2258, 2898
Hin1I GRCGYC 1 cut(s) 2831
HincII GTYRAC 2 cut(s) 1213, 3812
HindII GTYRAC 2 cut(s) 1213, 3812
HindIII AAGCTT 1 cut(s) 2290
HpaII CCGG 6 cut(s) 344, 537, 1858, 1970, 2258, 2898
HphI GGTGA 8 cut(s) 77, 521, 526, 626, 770, 3206, 3713, 3842
Hpy166II GTNNAC 6 cut(s) 293, 828, 946, 1213, 3557, 3812
Hpy8I GTNNAC 6 cut(s) 293, 828, 946, 1213, 3557, 3812
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 9 cut(s) 6, 186, 1724, 2384, 2630, 3063, 3210, 3302, 3988
HpyCH4III ACNGT 6 cut(s) 203, 943, 978, 2762, 3207, 3548
HpyCH4IV ACGT 3 cut(s) 289, 871, 2831
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 140, 3856
HpySE526I ACGT 3 cut(s) 289, 871, 2831
Hsp92I GRCGYC 1 cut(s) 2831
Kpn2I TCCGGA 1 cut(s) 1969
Ksp22I TGATCA 1 cut(s) 4005
LguI GCTCTTC 1 cut(s) 2851
LmnI GCTCC 8 cut(s) 540, 687, 870, 957, 2565, 3027, 3044, 3729
LweI GCATC 4 cut(s) 101, 121, 3382, 3829
MaeII ACGT 3 cut(s) 289, 871, 2831
MaeIII GTNAC 3 cut(s) 83, 2476, 3212
MbiI CCGCTC 1 cut(s) 1959
MfeI CAATTG 4 cut(s) 42, 859, 2201, 2345
MflI RGATCY 9 cut(s) 514, 589, 661, 736, 1737, 1936, 2152, 2296, 2800
MlsI TGGCCA 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 2 cut(s) 228, 2089
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 116, 3952
MroI TCCGGA 1 cut(s) 1969
MroXI GAANNNNTTC 2 cut(s) 383, 2743
MscI TGGCCA 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 243
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 6 cut(s) 344, 537, 1858, 1970, 2258, 2898
MspR9I CCNGG 2 cut(s) 345, 538
MunI CAATTG 4 cut(s) 42, 859, 2201, 2345
Mva1269I GAATGC 2 cut(s) 3334, 3973
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 55, 140, 3856
NciI CCSGG 2 cut(s) 345, 538
NcoI CCATGG 1 cut(s) 3672
NlaIV GGNNCC 6 cut(s) 866, 1968, 2437, 2541, 2561, 3670
NmuCI GTSAC 3 cut(s) 83, 2476, 3212
NruI TCGCGA 1 cut(s) 286
NsiI ATGCAT 2 cut(s) 116, 3952
NspI RCATGY 4 cut(s) 29, 1560, 1842, 2596
NspV TTCGAA 1 cut(s) 1825
PciI ACATGT 1 cut(s) 2592
PciSI GCTCTTC 1 cut(s) 2851
PctI GAATGC 2 cut(s) 3334, 3973
PdmI GAANNNNTTC 2 cut(s) 383, 2743
PleI GAGTC 2 cut(s) 227, 2088
PpsI GAGTC 2 cut(s) 227, 2088
PscI ACATGT 1 cut(s) 2592
PshAI GACNNNNGTC 1 cut(s) 444
Psp124BI GAGCTC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
PspEI GGTNACC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 1889
PspN4I GGNNCC 6 cut(s) 866, 1968, 2437, 2541, 2561, 3670
PspPI GGNCC 6 cut(s) 439, 906, 1833, 2034, 2540, 2928
PstNI CAGNNNCTG 1 cut(s) 3125
PsuI RGATCY 9 cut(s) 514, 589, 661, 736, 1737, 1936, 2152, 2296, 2800
RruI TCGCGA 1 cut(s) 286
RsaI GTAC 5 cut(s) 34, 314, 338, 2769, 3073
RsaNI GTAC 5 cut(s) 33, 313, 337, 2768, 3072
SacI GAGCTC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
SalI GTCGAC 1 cut(s) 3810
SapI GCTCTTC 1 cut(s) 2851
Sau96I GGNCC 6 cut(s) 439, 906, 1833, 2034, 2540, 2928
SchI GAGTC 2 cut(s) 228, 2089
ScrFI CCNGG 2 cut(s) 345, 538
SfaNI GCATC 4 cut(s) 101, 121, 3382, 3829
SfcI CTRYAG 1 cut(s) 2661
SfuI TTCGAA 1 cut(s) 1825
SinI GGWCC 4 cut(s) 439, 906, 1833, 2034
SmlI CTYRAG 6 cut(s) 502, 898, 2077, 2458, 3466, 3823
SmoI CTYRAG 6 cut(s) 502, 898, 2077, 2458, 3466, 3823
SpeI ACTAGT 1 cut(s) 3445
SspI AATATT 3 cut(s) 434, 694, 3234
SstI GAGCTC 9 cut(s) 705, 1262, 1334, 1406, 1478, 1550, 1622, 1694, 3852
StyD4I CCNGG 2 cut(s) 343, 536
StyI CCWWGG 6 cut(s) 753, 2439, 3438, 3672, 3727, 3761
TaaI ACNGT 6 cut(s) 203, 943, 978, 2762, 3207, 3548
TaiI ACGT 3 cut(s) 292, 874, 2834
TaqI TCGA 9 cut(s) 301, 1082, 1229, 1825, 2013, 2589, 2656, 2946, 3811
TaqII GACCGA 1 cut(s) 71
TatI WGTACW 3 cut(s) 32, 312, 336
TscAI CASTG 5 cut(s) 244, 616, 981, 1194, 3126
TseFI GTSAC 3 cut(s) 83, 2476, 3212
Tsp45I GTSAC 3 cut(s) 83, 2476, 3212
TspRI CASTG 5 cut(s) 244, 616, 981, 1194, 3126
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 4 cut(s) 439, 906, 1833, 2034
XbaI TCTAGA 5 cut(s) 586, 697, 733, 2303, 3568
XceI RCATGY 4 cut(s) 29, 1560, 1842, 2596
XcmI CCANNNNNNNNNTGG 2 cut(s) 2570, 2631
XmiI GTMKAC 2 cut(s) 827, 3811
XmnI GAANNNNTTC 2 cut(s) 383, 2743
ZraI GACGTC 1 cut(s) 2832
Zsp2I ATGCAT 2 cut(s) 116, 3952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.