Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000268

Physical Location & Seq

Genomic Coordinates Forward (+)

57354247 .. 57355300

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTAATACAGGGTAGAGCAATTGAGGCTGCCAAGAAAGGAGGTGATGATTGGCTGGAATTTGTTGCCACAGCACCAAAAAGGTTTGCTGCAATATTACAATATAGAAAAGGCCTTAAGAATGGAGAAAAGATATTCATCCCCATGCTGGATCCAGATACTACCCCACGTCACTGGTTCTTCATTGTGATTAAAATAGCGACAACAGATGTAGAAATATGGGACACCTGCCCGAGCCCTGCACGCAAAATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGCTGTTTCAAGAAAGGATGGTCGTTTTGTTCATTCACAGTTAGGAATGTAGATGACATTGAGTTTCAACAAAATGACTTCGATTGTGGCATTTTCATGCTTAGATACATAATAAATTATGATAATCCGTTGAAAGATGAGTTGGATTCGGTAAATCGTCGTGTGCAACTTGCCCTATGGATGTTGAAGCACCCGAAGAACCAAGCATGGCTGAAAATAAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCCAGAAAAAGATAAAGACAATTGAAGACATTGATGAAGCTATTGGAAATAGTGTTGATGACAATTATGAAAAGAGGTGTTCAAAAGTCGTACAGAAAAAATCATCAACAGTTCAAGCAAGGGGTCATGAAAAGAGGTGTTCAAAGGTCTTACAGAAAAAATCCTCAACAGTTCAAGCAAGGGGTCGTGGTCGCCCTCTTGGTGCAAAAAATAGAAATTCTCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016787 GO:0016926 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:1904331 GO:1904333 GO:2000112 GO:2000278 GO:2000573 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

267

Amino Acids

30.75

Weight (kDa)

9.32

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	39 - 143	3.4e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica	Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata	RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora	Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa	Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha	Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana	Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	572
AclWI	GGATC	2 cut(s)	146, 159
AcsI	RAATTY	2 cut(s)	59, 790
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	9 cut(s)	328, 386, 451, 505, 599, 657, 689, 717, 749
AjiI	CACGTC	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	2 cut(s)	321, 614
AluI	AGCT	2 cut(s)	321, 614
AlwI	GGATC	2 cut(s)	146, 159
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	29, 89
ApoI	RAATTY	2 cut(s)	59, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	16, 76
BccI	CCATC	2 cut(s)	330, 563
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	30, 90
BlsI	GCNGC	2 cut(s)	31, 91
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	153, 574
BpiI	GAAGAC	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	137
BseGI	GGATG	3 cut(s)	138, 341, 504
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	16, 76
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	572
BsiHKCI	CYCGRG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	239, 577
Bsp143I	GATC	2 cut(s)	151, 262
BspANI	GGCC	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	153, 574
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	146, 159
BspT107I	GGYRCC	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	151, 262
Bst4CI	ACNGT	3 cut(s)	358, 685, 745
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	138, 341, 504
BstKTI	GATC	2 cut(s)	154, 265
BstMBI	GATC	2 cut(s)	151, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 243
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	16, 76
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	138, 341, 504
BtsIMutI	CAGTG	2 cut(s)	172, 306
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	4 cut(s)	145, 415, 525, 701
CviJI	RGCY	9 cut(s)	29, 55, 114, 237, 254, 321, 529, 545, 614
CviKI_1	RGCY	9 cut(s)	29, 55, 114, 237, 254, 321, 529, 545, 614
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	2 cut(s)	153, 264
DpnII	GATC	2 cut(s)	151, 262
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	4 cut(s)	148, 418, 528, 704
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	144, 414, 524, 700
Fnu4HI	GCNGC	2 cut(s)	30, 90
FokI	GGATG	3 cut(s)	125, 348, 511
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	30, 90
GluI	GCNGC	2 cut(s)	30, 90
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	148, 418, 528, 704
HinfI	GANTC	1 cut(s)	464
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	4 cut(s)	155, 328, 701, 795
Hpy99I	CGWCG	1 cut(s)	480
HpyCH4III	ACNGT	3 cut(s)	358, 685, 745
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	92, 242, 484, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 243
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	148, 418, 528, 704
Kzo9I	GATC	2 cut(s)	151, 262
LpnPI	CCDG	7 cut(s)	41, 134, 160, 168, 241, 252, 590
Lsp1109I	GCAGC	2 cut(s)	16, 76
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	153, 264
MboI	GATC	2 cut(s)	151, 262
MboII	GAAGA	3 cut(s)	172, 526, 611
MfeI	CAATTG	2 cut(s)	21, 594
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	239, 577
MluCI	AATT	6 cut(s)	21, 59, 433, 594, 637, 790
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	7 cut(s)	19, 35, 535, 642, 702, 748, 780
MseI	TTAA	3 cut(s)	5, 117, 192
MslI	CAYNNNNRTG	2 cut(s)	143, 413
MspCI	CTTAAG	1 cut(s)	116
MunI	CAATTG	2 cut(s)	21, 594
MwoI	GCNNNNNNNGC	2 cut(s)	26, 243
NdeII	GATC	2 cut(s)	151, 262
NlaIII	CATG	4 cut(s)	148, 418, 528, 704
NlaIV	GGNNCC	2 cut(s)	153, 574
NmuCI	GTSAC	1 cut(s)	170
PagI	TCATGA	1 cut(s)	700
PaqCI	CACCTGC	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	31, 91
PspN4I	GGNNCC	2 cut(s)	153, 574
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	2 cut(s)	143, 413
SaqAI	TTAA	3 cut(s)	5, 117, 192
SatI	GCNGC	2 cut(s)	30, 90
Sau3AI	GATC	2 cut(s)	151, 262
SduI	GDGCHC	2 cut(s)	239, 577
SetI	ASST	9 cut(s)	46, 86, 172, 230, 323, 616, 653, 713, 723
SmiMI	CAYNNNNRTG	2 cut(s)	143, 413
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	21, 59, 433, 594, 637, 790
SseBI	AGGCCT	1 cut(s)	114
SspI	AATATT	2 cut(s)	96, 300
StuI	AGGCCT	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	358, 685, 745
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	256, 399, 796
TasI	AATT	6 cut(s)	21, 59, 433, 594, 637, 790
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	3 cut(s)	5, 117, 192
Tru9I	TTAA	3 cut(s)	5, 117, 192
TscAI	CASTG	2 cut(s)	179, 313
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	29, 89
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	8 cut(s)	127, 172, 339, 403, 570, 624, 657, 717
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	179, 313
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	59, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.