AT1G01800

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000170
Physical Location & Seq
Forward (+)
293246 .. 295086
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01800.2

Sequence Viewer

Length: 888 bp
ATGGCAGACCCAAGAGTTGCAGTTGTTACTGGTTCCAACAAAGGGATTGGGTTTGAGATTTGCAGGCAACTAGCTAACAATGGGATAACTGTGGTTTTAACTGCGAGAGATGAAAACAAGGGTCTTGCTGCTGTCCAAAAGCTCAAGACTGAGAATGGTTTTTCTGATCAAGCCATCTCCTTTCACCCTCTTGATGTCTCCAACCCAGACACCATCGCTTCTCTTGCTGCTTTTGTCAAGACCCGCTTCGGCAAACTCGATATTCTGGTTAATAATGCCGGAGTTGGAGGGGCGAATGTTAATGTTGATGTTCTCAAAGCTCAGATTGCTGAGGCTGGTGCGCCAACTGATATTTCCAAGATAATGAGTGATACATATGAGATAGTCGAGGAGTGTGTTAAAACAAACTACTACGGCGTTAAGCGAATGTGCGAGGCCATGATTCCTCTCCTTCAATCTTCTGATTCCCCAAGAATCGTCAGCATCGCTTCCACCATGGGAAAGTTAGAGAATGTTTCAAATGAATGGGCAAAAGGAGTGCTGAGTGATGCTGAGAACCTAACAGAAGAGAAAATAGATGAAGTGATCAATGAGTACCTCAAGGATTACAAAGAAGGTGCATTACAAGTCAAAGGTTGGCCAACAGTGATGTCTGGATACATACTATCGAAAGCTGCAGTGATCGCATTGACACGAGTATTGGCTAAGCGACACAAATCGTTCATCATCAACAGTGTTTGTCCTGGTTTCGTAAACACAGAAATCAATTTCAACACTGGGATCTTGAGCGTTGAAGAAGGTGCAGCGAGTCCAGTGAAACTGGCTTTGGTCCCTAATGGAGACCCATCTGGTCTTTTCTTTGATCGCGCCAATGTCTCCAACTTTTGA

Protein Analysis

295

Amino Acids

31.66

Weight (kDa)

5.27

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 867
AciI CCGC 1 cut(s) 244
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 1 cut(s) 638
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 4 cut(s) 455, 519, 772, 794
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 4 cut(s) 337, 369, 809, 841
AluBI AGCT 4 cut(s) 74, 142, 320, 674
AluI AGCT 4 cut(s) 74, 142, 320, 674
Alw26I GTCTC 3 cut(s) 202, 834, 880
AlwI GGATC 1 cut(s) 788
AoxI GGCC 2 cut(s) 435, 638
ApeKI GCWGC 4 cut(s) 128, 227, 674, 803
AspLEI GCGC 2 cut(s) 343, 869
AspS9I GGNCC 1 cut(s) 829
AsuHPI GGTGA 1 cut(s) 176
AvaII GGWCC 1 cut(s) 829
BalI TGGCCA 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BauI CACGAG 1 cut(s) 693
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 4 cut(s) 115, 214, 661, 815
BccI CCATC 3 cut(s) 182, 221, 853
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 744
BciVI GTATCC 1 cut(s) 650
BclI TGATCA 2 cut(s) 166, 585
BcoDI GTCTC 3 cut(s) 202, 834, 880
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 675
BfuI GTATCC 1 cut(s) 650
BisI GCNGC 4 cut(s) 129, 228, 675, 804
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 4 cut(s) 130, 229, 676, 805
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 829
BmiI GGNNCC 2 cut(s) 34, 831
BmrFI CCNGG 1 cut(s) 744
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 2 cut(s) 492, 538
BmuI ACTGGG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 705
BpuEI CTTGAG 3 cut(s) 128, 584, 805
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 4 cut(s) 34, 781, 812, 825
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 5 cut(s) 141, 321, 335, 533, 543
BseNI ACTGG 4 cut(s) 34, 781, 812, 825
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 4 cut(s) 115, 214, 661, 815
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 2 cut(s) 437, 640
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 202, 834, 880
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 2 cut(s) 437, 640
Bso31I GGTCTC 1 cut(s) 834
Bsp143I GATC 5 cut(s) 166, 585, 681, 780, 862
Bsp1720I GCTNAGC 1 cut(s) 705
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 1 cut(s) 244
BspANI GGCC 2 cut(s) 437, 640
BspCNI CTCAG 5 cut(s) 142, 322, 334, 534, 544
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 2 cut(s) 34, 831
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 834
BsrI ACTGG 4 cut(s) 34, 781, 812, 825
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 5 cut(s) 166, 585, 681, 780, 862
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 3 cut(s) 91, 646, 734
Bst6I CTCTTC 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 6 cut(s) 150, 321, 330, 542, 552, 705
BstDSI CCRYGG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 867
BstHHI GCGC 2 cut(s) 343, 869
BstKTI GATC 5 cut(s) 169, 588, 684, 783, 865
BstMAI GTCTC 3 cut(s) 202, 834, 880
BstMBI GATC 5 cut(s) 166, 585, 681, 780, 862
BstMWI GCNNNNNNNGC 3 cut(s) 224, 326, 683
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 4 cut(s) 115, 214, 661, 815
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 2 cut(s) 437, 640
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 2 cut(s) 199, 469
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 5 cut(s) 651, 684, 739, 774, 819
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 2 cut(s) 343, 869
Cfr13I GGNCC 1 cut(s) 829
Csp6I GTAC 1 cut(s) 595
CviAII CATG 2 cut(s) 439, 496
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 6 cut(s) 150, 321, 330, 542, 552, 705
DpnI GATC 5 cut(s) 168, 587, 683, 782, 864
DpnII GATC 5 cut(s) 166, 585, 681, 780, 862
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 2 cut(s) 442, 499
FaiI YATR 5 cut(s) 376, 378, 440, 497, 662
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 815
FatI CATG 2 cut(s) 438, 495
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 2 cut(s) 166, 585
Fnu4HI GCNGC 4 cut(s) 129, 228, 675, 804
Fsp4HI GCNGC 4 cut(s) 129, 228, 675, 804
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 342, 868
GluI GCNGC 4 cut(s) 129, 228, 675, 804
HaeIII GGCC 2 cut(s) 437, 640
HapII CCGG 1 cut(s) 279
HhaI GCGC 2 cut(s) 343, 869
Hin1II CATG 2 cut(s) 442, 499
Hin6I GCGC 2 cut(s) 341, 867
HinP1I GCGC 2 cut(s) 341, 867
HinfI GANTC 4 cut(s) 442, 464, 474, 808
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 3 cut(s) 166, 324, 463
Hpy188III TCNNGA 5 cut(s) 145, 191, 238, 654, 784
Hpy8I GTNNAC 1 cut(s) 754
HpyAV CCTTC 3 cut(s) 461, 608, 791
HpyCH4III ACNGT 3 cut(s) 91, 646, 734
HpyCH4V TGCA 5 cut(s) 20, 63, 620, 677, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 326, 683
HpyF3I CTNAG 6 cut(s) 150, 321, 330, 542, 552, 705
Hsp92II CATG 2 cut(s) 442, 499
HspAI GCGC 2 cut(s) 341, 867
Ksp22I TGATCA 2 cut(s) 166, 585
Kzo9I GATC 5 cut(s) 166, 585, 681, 780, 862
Lsp1109I GCAGC 4 cut(s) 115, 214, 661, 815
LweI GCATC 2 cut(s) 492, 538
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 25
MalI GATC 5 cut(s) 168, 587, 683, 782, 864
MboI GATC 5 cut(s) 166, 585, 681, 780, 862
MboII GAAGA 3 cut(s) 450, 578, 806
MflI RGATCY 1 cut(s) 780
MlsI TGGCCA 1 cut(s) 640
MluCI AATT 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 640
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 3 cut(s) 60, 225, 265
MnlI CCTC 7 cut(s) 198, 281, 325, 382, 427, 456, 608
Mox20I TGGCCA 1 cut(s) 640
MscI TGGCCA 1 cut(s) 640
MseI TTAA 5 cut(s) 98, 270, 300, 399, 420
Msp20I TGGCCA 1 cut(s) 640
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 3 cut(s) 224, 326, 683
NcoI CCATGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 166, 585, 681, 780, 862
NlaIII CATG 2 cut(s) 442, 499
NlaIV GGNNCC 2 cut(s) 34, 831
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 3 cut(s) 442, 464, 474
PkrI GCNGC 4 cut(s) 130, 229, 676, 805
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 34, 831
PspPI GGNCC 1 cut(s) 829
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 780
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SaqAI TTAA 5 cut(s) 98, 270, 300, 399, 420
SatI GCNGC 4 cut(s) 129, 228, 675, 804
Sau3AI GATC 5 cut(s) 166, 585, 681, 780, 862
Sau96I GGNCC 1 cut(s) 829
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 744
SetI ASST 9 cut(s) 76, 144, 322, 561, 600, 619, 637, 676, 802
SfaNI GCATC 2 cut(s) 492, 538
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 829
SmlI CTYRAG 3 cut(s) 143, 599, 784
SmoI CTYRAG 3 cut(s) 143, 599, 784
Sse9I AATT 1 cut(s) 766
SsiI CCGC 1 cut(s) 244
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 91, 646, 734
TaqI TCGA 3 cut(s) 258, 387, 668
TasI AATT 1 cut(s) 766
TfiI GAWTC 3 cut(s) 442, 464, 474
Tru1I TTAA 5 cut(s) 98, 270, 300, 399, 420
Tru9I TTAA 5 cut(s) 98, 270, 300, 399, 420
TscAI CASTG 5 cut(s) 651, 684, 739, 781, 819
TseI GCWGC 4 cut(s) 128, 227, 674, 803
TspDTI ATGAA 4 cut(s) 126, 537, 594, 712
TspRI CASTG 5 cut(s) 651, 684, 739, 781, 819
VpaK11BI GGWCC 1 cut(s) 829
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.