Prupe.2G161300_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21269204 .. 21271762
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G161300.3

Sequence Viewer

Length: 1005 bp
ATGAAAAATCAAAGGCTTTCCAAGAACATTCACTATAAAAGAAAAGAAGGCTCCTTCTGTTTAACACACATCTCAATTCTCACAGACCGTCCCGTTTCGAATCTATCAATGGCAGAAGCAACAAAGAGGTATGCGGTTGTTACTGGAGCAAACAAAGGTATAGGATTGGAAACTGTAAGGCAGTTGGCCTCAAATGGGTTCACCGTAGTCTTAACTGCCCGAGATGAGAAGAGGGGTCTTGAAGCTGTTGAGAAACTCAAAGAGTCTGGCCTCTCAGGTCAAGTGGTTTTTCATCAACTTGATGTGGTTGACCCTGCTACTGTTGCTTCTTTGGCAGACTTCATCAAAACCCAGTTTGGGAAACTCGATATCTTGGTGAACAATGCAGGGGTTGGTGGAAGCATAGTAGATGGTGATGCTTTTAAAGCTTCTGTAGCCTCCGGTGCCACGGAAAGAGGAGGAGTTGATTTTAGTAAACTAGTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATAAACTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATCCCACTCCTCCAGTTATCTGACTCACCGAAAATTGTTAATGTTTCTTCTGTCATGGGGATGTTAAACAACATACCAAGCGATTGGGCTAGAGGAGTTTTTACTGATGCCGAAAACCTAACAGAAGAGAGAGTAGATGAGGTACTGACTGAGCTTCTAAAAGATTTCAAGGAGGGTTCACTTGAAAGTAAGGGCTGGCCTTCTTCTATGCCTGCCTATATAGTCTCAAAAGCAGCACTGAACGCATATACAAGGATTCTAGCAAAGAAGTACCCCACTTTTCGTATCAATTCAGTCTGCCCTGGCTTTGTCAAAACAGATATAAACTACAATGTCGGTGTCCTACCTGTCGAAGAAGGGGCTGCAAGGGTTATGAAGTTAGCATTGCTGCCCAATGATGGGCCTTCTGGTTCCTTCTTTGTTCAGTATGAAGTGTCAGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

335

Amino Acids

36.3

Weight (kDa)

5.81

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 702, 830
AfiI CCNNNNNNNGG 4 cut(s) 195, 357, 956, 957
AgsI TTSAA 3 cut(s) 242, 727, 743
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 4 cut(s) 245, 428, 548, 712
AluI AGCT 4 cut(s) 245, 428, 548, 712
Alw26I GTCTC 1 cut(s) 787
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 4 cut(s) 186, 268, 755, 959
ApeKI GCWGC 3 cut(s) 791, 920, 946
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 4 cut(s) 193, 388, 425, 576
AsuII TTCGAA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 803, 907, 933
BccI CCATC 2 cut(s) 404, 950
BciT130I CCWGG 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 787
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 3 cut(s) 479, 648, 818
BfmI CTRYAG 1 cut(s) 432
BglII AGATCT 1 cut(s) 997
BisI GCNGC 3 cut(s) 792, 921, 947
BlsI GCNGC 3 cut(s) 793, 922, 948
Bme1390I CCNGG 1 cut(s) 861
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 3 cut(s) 52, 445, 970
BmrFI CCNGG 1 cut(s) 861
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 406, 655
BmuI ACTGGG 1 cut(s) 346
BpmI CTGGAG 2 cut(s) 165, 554
Bpu14I TTCGAA 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 447, 859
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 357, 956, 957
Bse1I ACTGG 3 cut(s) 148, 352, 571
Bse3DI GCAATG 1 cut(s) 941
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 2 cut(s) 447, 859
BseGI GGATG 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 195, 357, 956, 957
BseMI GCAATG 1 cut(s) 941
BseMII CTCAG 2 cut(s) 288, 699
BseNI ACTGG 3 cut(s) 148, 352, 571
BseRI GAGGAG 4 cut(s) 471, 474, 557, 666
BseXI GCAGC 3 cut(s) 803, 907, 933
BshFI GGCC 4 cut(s) 188, 270, 757, 961
BshNI GGYRCC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 4 cut(s) 195, 357, 956, 957
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 4 cut(s) 188, 270, 757, 961
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 997
BspACI CCGC 1 cut(s) 134
BspANI GGCC 4 cut(s) 188, 270, 757, 961
BspCNI CTCAG 2 cut(s) 287, 700
BspLI GGNNCC 3 cut(s) 52, 445, 970
BspT104I TTCGAA 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 941
BsrI ACTGG 3 cut(s) 148, 352, 571
BssECI CCNNGG 2 cut(s) 447, 859
BssMI GATC 1 cut(s) 997
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 4 cut(s) 89, 175, 205, 322
Bst6I CTCTTC 2 cut(s) 224, 678
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 515, 755, 771
BstDEI CTNAG 2 cut(s) 274, 708
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 624
BstKTI GATC 1 cut(s) 1000
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 1 cut(s) 997
BstMWI GCNNNNNNNGC 6 cut(s) 323, 332, 425, 434, 443, 800
BstNI CCWGG 1 cut(s) 861
BstSCI CCNGG 1 cut(s) 859
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 3 cut(s) 803, 907, 933
BstX2I RGATCY 1 cut(s) 997
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 1 cut(s) 997
BsuRI GGCC 4 cut(s) 188, 270, 757, 961
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 794
Cac8I GCNNGC 3 cut(s) 515, 755, 771
Cfr13I GGNCC 1 cut(s) 959
Csp6I GTAC 2 cut(s) 701, 829
CviAII CATG 1 cut(s) 613
CviQI GTAC 2 cut(s) 701, 829
DdeI CTNAG 2 cut(s) 274, 708
DpnI GATC 1 cut(s) 999
DpnII GATC 1 cut(s) 997
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 224, 678
EarI CTCTTC 2 cut(s) 224, 678
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 859
EcoRV GATATC 1 cut(s) 370
FaeI CATG 1 cut(s) 616
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 792, 921, 947
FokI GGATG 1 cut(s) 631
Fsp4HI GCNGC 3 cut(s) 792, 921, 947
FspBI CTAG 3 cut(s) 479, 648, 818
GluI GCNGC 3 cut(s) 792, 921, 947
GsuI CTGGAG 2 cut(s) 165, 554
HaeIII GGCC 4 cut(s) 188, 270, 757, 961
HapII CCGG 1 cut(s) 441
Hin1II CATG 1 cut(s) 616
HincII GTYRAC 2 cut(s) 310, 501
HindII GTYRAC 2 cut(s) 310, 501
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 100, 263, 581, 814
HpaI GTTAAC 1 cut(s) 501
HpaII CCGG 1 cut(s) 441
HphI GGTGA 4 cut(s) 193, 388, 425, 576
Hpy166II GTNNAC 6 cut(s) 201, 310, 379, 476, 501, 737
Hpy188I TCNGA 2 cut(s) 580, 997
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 6 cut(s) 201, 310, 379, 476, 501, 737
HpyAV CCTTC 6 cut(s) 41, 64, 768, 908, 972, 982
HpyCH4III ACNGT 4 cut(s) 89, 175, 205, 322
HpyCH4V TGCA 3 cut(s) 386, 517, 923
HpyF10VI GCNNNNNNNGC 6 cut(s) 323, 332, 425, 434, 443, 800
HpyF3I CTNAG 2 cut(s) 274, 708
Hsp92II CATG 1 cut(s) 616
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 997
LmnI GCTCC 2 cut(s) 56, 146
Lsp1109I GCAGC 3 cut(s) 803, 907, 933
LweI GCATC 2 cut(s) 406, 655
MaeI CTAG 3 cut(s) 479, 648, 818
MaeIII GTNAC 2 cut(s) 139, 481
MalI GATC 1 cut(s) 999
MboI GATC 1 cut(s) 997
MboII GAAGA 6 cut(s) 241, 518, 597, 695, 753, 923
MflI RGATCY 1 cut(s) 997
MluCI AATT 3 cut(s) 75, 591, 847
MlyI GAGTC 2 cut(s) 272, 575
MseI TTAA 6 cut(s) 62, 212, 423, 500, 597, 623
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 6 cut(s) 323, 332, 425, 434, 443, 800
NdeII GATC 1 cut(s) 997
NlaIII CATG 1 cut(s) 616
NlaIV GGNNCC 3 cut(s) 52, 445, 970
NmuCI GTSAC 1 cut(s) 481
NspV TTCGAA 1 cut(s) 98
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 100, 814
PkrI GCNGC 3 cut(s) 793, 922, 948
PleI GAGTC 2 cut(s) 271, 575
PpsI GAGTC 2 cut(s) 271, 575
Psp6I CCWGG 1 cut(s) 859
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 3 cut(s) 52, 445, 970
PspPI GGNCC 1 cut(s) 959
PsuI RGATCY 1 cut(s) 997
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 702, 830
RsaNI GTAC 2 cut(s) 701, 829
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 6 cut(s) 62, 212, 423, 500, 597, 623
SatI GCNGC 3 cut(s) 792, 921, 947
Sau3AI GATC 1 cut(s) 997
Sau96I GGNCC 1 cut(s) 959
SchI GAGTC 2 cut(s) 272, 575
ScrFI CCNGG 1 cut(s) 861
SfaNI GCATC 2 cut(s) 406, 655
SfcI CTRYAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 478
Sse9I AATT 3 cut(s) 75, 591, 847
SsiI CCGC 1 cut(s) 134
SspMI CTAG 3 cut(s) 479, 648, 818
StyD4I CCNGG 1 cut(s) 859
TaaI ACNGT 4 cut(s) 89, 175, 205, 322
TaqI TCGA 3 cut(s) 98, 366, 909
TasI AATT 3 cut(s) 75, 591, 847
TfiI GAWTC 2 cut(s) 100, 814
Tru1I TTAA 6 cut(s) 62, 212, 423, 500, 597, 623
Tru9I TTAA 6 cut(s) 62, 212, 423, 500, 597, 623
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 791, 920, 946
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 17, 281, 331, 947, 1002
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 1 cut(s) 801
XspI CTAG 3 cut(s) 479, 648, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.