Rroxscaffold_4G00301830

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000170
Physical Location & Seq
Reverse (-)
22154315 .. 22157395
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301830.1

Sequence Viewer

Length: 897 bp
ATGGCAGAATCAACCAAAAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATTGGATTCGAAACTGTAAGGCAATTAGCCTCAAGGGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTTATGGAGTCTGGCCTCTCAGGCCAAGTTGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTACTTCTCTGGCACAATTTATCAAAACTCAGTTTGGAAAACTCGATATTTTGGTTAACAATGCAGGGATTTTAGGGGCTATAGTTGATGCTGATGGTCTTAAAGATGCAATTGCATCTGGTGCTGGACCAGGACAGATTGATTGGAAAAAGTTGTTGACTGAAACTTACGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGAGCTAAAAGAACAGCTGAAGCACTAATTTCACTCCTCCAGCTATCTGATTCACCAAGGATTGTTAATGTTTCATCCGGTTTGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTCGAGAACCTAAGCGAAGAGAGTGTAGATGAAATAGTGACAGAGTTTTTAATCGATCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTCTGTGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGCTTTTCGTGTCAACTCTGTCTGCCCTGGCTTTGTCAAAACAGATATTAACTTAAATAGCGGCTTCATACCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCACACAGGCCAATTCTTTTCTCTGTCTGAAGTGCAAAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.0

Weight (kDa)

5.09

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 4.2e-26 short chain dehydrogenase
KR PF08659 10 - 97 3.4e-07 KR domain
adh_short_C2 PF13561 15 - 167 8.5e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 212 - 259 3.2e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 219 - 259 3.2e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 726, 786
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 553, 722
AfiI CCNNNNNNNGG 2 cut(s) 504, 848
AgsI TTSAA 3 cut(s) 134, 635, 803
AjnI CCWGG 2 cut(s) 343, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 137, 425, 437, 463
AluI AGCT 4 cut(s) 137, 425, 437, 463
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 46
AoxI GGCC 6 cut(s) 127, 160, 169, 647, 850, 859
ApeKI GCWGC 3 cut(s) 683, 812, 838
ApoI RAATTY 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 127, 341
AsuHPI GGTGA 2 cut(s) 176, 465
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 852
BbvI GCAGC 3 cut(s) 695, 799, 825
BccI CCATC 2 cut(s) 302, 842
BciT130I CCWGG 2 cut(s) 345, 753
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 3 cut(s) 111, 210, 710
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 2 cut(s) 168, 858
BisI GCNGC 4 cut(s) 684, 787, 813, 839
BlsI GCNGC 4 cut(s) 685, 788, 814, 840
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 345, 753
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 127, 341
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 345, 753
BmsI GCATC 3 cut(s) 292, 310, 338
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 67, 602
Bsa29I ATCGAT 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 476, 751
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 848
Bse3DI GCAATG 2 cut(s) 693, 833
BseBI CCWGG 2 cut(s) 345, 753
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 476, 751
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 504, 848
BseMI GCAATG 2 cut(s) 693, 833
BseMII CTCAG 2 cut(s) 180, 257
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 695, 799, 825
BshFI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BshVI ATCGAT 1 cut(s) 612
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 504, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 404, 697
BsnI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 38, 529, 613
BspACI CCGC 2 cut(s) 726, 786
BspANI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BspCNI CTCAG 2 cut(s) 179, 256
BspDI ATCGAT 1 cut(s) 612
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 693, 833
BssECI CCNNGG 2 cut(s) 476, 751
BssMI GATC 3 cut(s) 38, 529, 613
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 345, 753
Bst4CI ACNGT 3 cut(s) 67, 97, 673
Bst6I CTCTTC 2 cut(s) 116, 570
BstAPI GCANNNNNTGC 2 cut(s) 335, 692
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 166, 243, 548, 569
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 3 cut(s) 41, 532, 616
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 3 cut(s) 38, 529, 613
BstMWI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
BstNI CCWGG 2 cut(s) 345, 753
BstSCI CCNGG 2 cut(s) 343, 751
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 695, 799, 825
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BsuTUI ATCGAT 1 cut(s) 612
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 127, 341
ClaI ATCGAT 1 cut(s) 612
Csp6I GTAC 2 cut(s) 552, 721
CviQI GTAC 2 cut(s) 552, 721
DdeI CTNAG 4 cut(s) 166, 243, 548, 569
DpnI GATC 3 cut(s) 40, 531, 615
DpnII GATC 3 cut(s) 38, 529, 613
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco130I CCWWGG 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 343, 751
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 476
FaiI YATR 9 cut(s) 24, 152, 296, 420, 521, 669, 697, 699, 794
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 684, 787, 813, 839
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 684, 787, 813, 839
FspBI CTAG 3 cut(s) 111, 210, 710
GluI GCNGC 4 cut(s) 684, 787, 813, 839
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
HapII CCGG 1 cut(s) 498
HincII GTYRAC 4 cut(s) 271, 372, 390, 739
HindII GTYRAC 4 cut(s) 271, 372, 390, 739
HinfI GANTC 6 cut(s) 8, 57, 90, 155, 470, 706
HpaI GTTAAC 2 cut(s) 271, 390
HpaII CCGG 1 cut(s) 498
HphI GGTGA 2 cut(s) 176, 465
Hpy166II GTNNAC 5 cut(s) 271, 372, 390, 629, 739
Hpy188I TCNGA 2 cut(s) 469, 880
Hpy188III TCNNGA 2 cut(s) 562, 823
Hpy8I GTNNAC 5 cut(s) 271, 372, 390, 629, 739
HpyAV CCTTC 2 cut(s) 660, 800
HpyCH4III ACNGT 3 cut(s) 67, 97, 673
HpyCH4V TGCA 8 cut(s) 26, 278, 323, 329, 406, 695, 815, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
HpyF3I CTNAG 4 cut(s) 166, 243, 548, 569
KspAI GTTAAC 2 cut(s) 271, 390
Kzo9I GATC 3 cut(s) 38, 529, 613
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 3 cut(s) 695, 799, 825
LweI GCATC 3 cut(s) 292, 310, 338
MaeI CTAG 3 cut(s) 111, 210, 710
MaeIII GTNAC 2 cut(s) 31, 595
MalI GATC 3 cut(s) 40, 531, 615
MboI GATC 3 cut(s) 38, 529, 613
MboII GAAGA 4 cut(s) 133, 407, 587, 815
MfeI CAATTG 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 8 cut(s) 51, 74, 230, 324, 412, 447, 826, 863
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 4 cut(s) 91, 117, 173, 467
Mox20I TGGCCA 1 cut(s) 852
Mph1103I ATGCAT 1 cut(s) 697
MscI TGGCCA 1 cut(s) 852
MseI TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 2 cut(s) 345, 753
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 404, 697
MvaI CCWGG 2 cut(s) 345, 753
MwoI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
NdeII GATC 3 cut(s) 38, 529, 613
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 2 cut(s) 31, 595
NsiI ATGCAT 1 cut(s) 697
NspV TTCGAA 1 cut(s) 60
PctI GAATGC 2 cut(s) 404, 697
PfeI GAWTC 5 cut(s) 8, 57, 90, 470, 706
PkrI GCNGC 4 cut(s) 685, 788, 814, 840
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 343, 751
PspGI CCWGG 2 cut(s) 343, 751
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 127, 341
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 553, 722
RsaNI GTAC 2 cut(s) 552, 721
SaqAI TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
SatI GCNGC 4 cut(s) 684, 787, 813, 839
Sau3AI GATC 3 cut(s) 38, 529, 613
Sau96I GGNCC 2 cut(s) 127, 341
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 345, 753
SetI ASST 8 cut(s) 23, 139, 427, 439, 465, 570, 799, 811
SfaNI GCATC 3 cut(s) 292, 310, 338
SfcI CTRYAG 1 cut(s) 294
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 858
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 82, 617
SmoI CTYRAG 2 cut(s) 82, 617
Sse9I AATT 8 cut(s) 51, 74, 230, 324, 412, 447, 826, 863
SsiI CCGC 2 cut(s) 726, 786
SspMI CTAG 3 cut(s) 111, 210, 710
StyD4I CCNGG 2 cut(s) 343, 751
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 67, 97, 673
TaqI TCGA 5 cut(s) 60, 258, 532, 561, 612
TasI AATT 8 cut(s) 51, 74, 230, 324, 412, 447, 826, 863
TatI WGTACW 1 cut(s) 551
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 5 cut(s) 8, 57, 90, 470, 706
Tru1I TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
Tru9I TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 31, 595
TseI GCWGC 3 cut(s) 683, 812, 838
Tsp45I GTSAC 2 cut(s) 31, 595
TspDTI ATGAA 4 cut(s) 483, 603, 704, 781
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 826
XspI CTAG 3 cut(s) 111, 210, 710
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.