Rh1DG245600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000170
Physical Location & Seq
Forward (+)
46016055 .. 46016724
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG245600.1

Sequence Viewer

Length: 372 bp
ATGGAAGAATCAAGAAAGAGGTACGCGGTTGTTACAGGTTCAAATCAGGGGATTGGATTTGGAACAGTTAAGCAGTTGGCCTCAAATGGGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCGGTTGAAGAATTAAAGGACTCCGGCCTCTCTGACCTTGTTGTTTATCATCAGCTTGATGTAACAGGCCCTGCTAGCATTGCTTCCCTTGCAGATTTTGTCAAAACCCGATTTGGGAAACTAGATATCTTGGTAAACAATGCTGGTGTTAGTGGAACCATTACAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTATGGCTAAGGTGAGTTTAATTATCAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

123

Amino Acids

12.91

Weight (kDa)

5.77

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 98 5.6e-20 short chain dehydrogenase
adh_short_C2 PF13561 15 - 98 3.6e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 26, 137, 333
AclWI GGATC 2 cut(s) 98, 296
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 87, 249
AgsI TTSAA 3 cut(s) 42, 134, 143
AluBI AGCT 2 cut(s) 110, 190
AluI AGCT 2 cut(s) 110, 190
AlwI GGATC 2 cut(s) 98, 296
AlwNI CAGNNNCTG 2 cut(s) 206, 305
AoxI GGCC 3 cut(s) 78, 160, 202
ApeKI GCWGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 361
AsuNHI GCTAGC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 341
BfaI CTAG 2 cut(s) 210, 257
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 2 cut(s) 330, 333
BlsI GCNGC 2 cut(s) 331, 334
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 292
BmtI GCTAGC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 249
Bse3DI GCAATG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 87, 249
BseMI GCAATG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 80, 162, 204
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 87, 249
BsnI GGCC 3 cut(s) 80, 162, 204
Bsp143I GATC 2 cut(s) 90, 301
BspACI CCGC 3 cut(s) 26, 137, 333
BspANI GGCC 3 cut(s) 80, 162, 204
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 98, 296
BsrDI GCAATG 1 cut(s) 213
BssMI GATC 2 cut(s) 90, 301
Bst4CI ACNGT 2 cut(s) 67, 100
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 2 cut(s) 93, 304
BstMBI GATC 2 cut(s) 90, 301
BstMWI GCNNNNNNNGC 5 cut(s) 210, 215, 224, 329, 341
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 3 cut(s) 80, 162, 204
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 211
CaiI CAGNNNCTG 2 cut(s) 206, 305
CciI TCATGA 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 80, 110, 162, 190, 204, 332, 344
CviKI_1 RGCY 7 cut(s) 80, 110, 162, 190, 204, 332, 344
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 92, 303
DpnII GATC 2 cut(s) 90, 301
Eco32I GATATC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 203
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 341
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 330, 333
Fsp4HI GCNGC 2 cut(s) 330, 333
FspBI CTAG 2 cut(s) 210, 257
GluI GCNGC 2 cut(s) 330, 333
HaeIII GGCC 3 cut(s) 80, 162, 204
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 97
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 8, 155
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 105, 271
Hpy188I TCNGA 2 cut(s) 169, 317
Hpy188III TCNNGA 3 cut(s) 12, 94, 305
Hpy8I GTNNAC 2 cut(s) 105, 271
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 67, 100
HpyCH4V TGCA 2 cut(s) 227, 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 215, 224, 329, 341
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 90, 301
LpnPI CCDG 8 cut(s) 21, 32, 172, 186, 219, 264, 318, 321
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 2 cut(s) 210, 257
MaeIII GTNAC 2 cut(s) 31, 196
MalI GATC 2 cut(s) 92, 303
MboI GATC 2 cut(s) 90, 301
MboII GAAGA 3 cut(s) 17, 133, 155
MflI RGATCY 1 cut(s) 301
MluCI AATT 2 cut(s) 146, 357
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 12, 91, 173
MseI TTAA 4 cut(s) 69, 104, 149, 356
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 210, 215, 224, 329, 341
NdeII GATC 2 cut(s) 90, 301
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 292
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 331, 334
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 2 cut(s) 206, 305
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 69, 104, 149, 356
SatI GCNGC 2 cut(s) 330, 333
Sau3AI GATC 2 cut(s) 90, 301
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 149
SetI ASST 7 cut(s) 23, 40, 112, 174, 192, 340, 351
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 146, 357
SsiI CCGC 3 cut(s) 26, 137, 333
SspMI CTAG 2 cut(s) 210, 257
TaaI ACNGT 2 cut(s) 67, 100
TasI AATT 2 cut(s) 146, 357
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 69, 104, 149, 356
Tru9I TTAA 4 cut(s) 69, 104, 149, 356
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 329
TspRI CASTG 1 cut(s) 105
XspI CTAG 2 cut(s) 210, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.