RLG00000028272

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000170
Physical Location & Seq
Reverse (-)
20903741 .. 20905579
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028272

Sequence Viewer

Length: 606 bp
ATGACTGAAACTTACGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGAATTGTTAATGTTTCATCCTCTATGGGGAAGCTAAAGAACATACCAAGTGATCGAGTCAAAGGAGTTCTTAGCACTGATGTGGAGAACCTAAGTGAAGAGACTGTAGACGAAGTACTGACAGAGTTTCTAAACGATTTCAAGGAAAATTTACTTGAAAGCAAGGGTTGGCCTTCTATGATGCCAGGCTATAGAGTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGTGTCAACTCTGTCTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACCGGCGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCCCACAGGCCAATTCTTTGATCGGTCTGAAGAGGAGACGGTGGAATATGTGACTCGCCATATGTGGTTCCCAAATATGAGGCAGTACATGACTTGTTGTCACTTCCTTCCTGACTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

202

Amino Acids

22.71

Weight (kDa)

4.87

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 91 - 136 3.1e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 96 - 136 6e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 256, 457
AcuI CTGAAG 2 cut(s) 90, 531
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 3 cut(s) 225, 353, 569
AfiI CCNNNNNNNGG 2 cut(s) 135, 479
AgsI TTSAA 4 cut(s) 250, 266, 412, 434
AhdI GACNNNNNGTC 1 cut(s) 579
AjnI CCWGG 2 cut(s) 292, 382
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 68, 94, 142
AluI AGCT 3 cut(s) 68, 94, 142
Alw26I GTCTC 3 cut(s) 203, 310, 512
AoxI GGCC 3 cut(s) 278, 481, 490
ApeKI GCWGC 3 cut(s) 314, 443, 469
ApoI RAATTY 2 cut(s) 256, 457
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 96
BbvI GCAGC 3 cut(s) 326, 430, 456
BccI CCATC 1 cut(s) 473
BciT130I CCWGG 2 cut(s) 294, 384
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 203, 310, 512
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 213, 298
BglI GCCNNNNNGGC 1 cut(s) 489
BisI GCNGC 3 cut(s) 315, 444, 470
BlsI GCNGC 3 cut(s) 316, 445, 471
BmcAI AGTACT 1 cut(s) 225
Bme1390I CCNGG 3 cut(s) 294, 357, 384
BmeRI GACNNNNNGTC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 2 cut(s) 484, 551
BmrFI CCNGG 3 cut(s) 294, 357, 384
BmsI GCATC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 355, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 479
Bse118I RCCGGY 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 324, 464
BseBI CCWGG 2 cut(s) 294, 384
BseDI CCNNGG 2 cut(s) 355, 382
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 135, 479
BseMI GCAATG 2 cut(s) 324, 464
BseRI GAGGAG 2 cut(s) 77, 530
BseXI GCAGC 3 cut(s) 326, 430, 456
BshFI GGCC 3 cut(s) 280, 483, 492
BsiSI CCGG 2 cut(s) 357, 417
BslI CCNNNNNNNGG 2 cut(s) 135, 479
BsmAI GTCTC 3 cut(s) 203, 310, 512
BsmBI CGTCTC 1 cut(s) 512
BsmI GAATGC 2 cut(s) 35, 328
BsnI GGCC 3 cut(s) 280, 483, 492
Bsp143I GATC 2 cut(s) 160, 502
BspANI GGCC 3 cut(s) 280, 483, 492
BspLI GGNNCC 2 cut(s) 484, 551
BsrDI GCAATG 2 cut(s) 324, 464
BsrFI RCCGGY 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 355, 382
BssMI GATC 2 cut(s) 160, 502
BssNI GRCGYC 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 294, 384
Bst4CI ACNGT 2 cut(s) 214, 523
Bst6I CTCTTC 2 cut(s) 201, 507
BstACI GRCGYC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 179, 200
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 163, 505
BstMAI GTCTC 3 cut(s) 203, 310, 512
BstMBI GATC 2 cut(s) 160, 502
BstMWI GCNNNNNNNGC 2 cut(s) 323, 489
BstNI CCWGG 2 cut(s) 294, 384
BstSCI CCNGG 3 cut(s) 292, 355, 382
BstSFI CTRYAG 2 cut(s) 213, 298
BstV1I GCAGC 3 cut(s) 326, 430, 456
BsuRI GGCC 3 cut(s) 280, 483, 492
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 224, 352, 568
CviAII CATG 1 cut(s) 571
CviJI RGCY 9 cut(s) 68, 94, 142, 280, 297, 344, 387, 483, 492
CviKI_1 RGCY 9 cut(s) 68, 94, 142, 280, 297, 344, 387, 483, 492
CviQI GTAC 3 cut(s) 224, 352, 568
DdeI CTNAG 2 cut(s) 179, 200
DpnI GATC 2 cut(s) 162, 504
DpnII GATC 2 cut(s) 160, 502
DriI GACNNNNNGTC 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 201, 507
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 2 cut(s) 201, 507
Eco57I CTGAAG 2 cut(s) 90, 531
EcoRII CCWGG 2 cut(s) 292, 382
EcoT22I ATGCAT 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 1 cut(s) 574
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 1 cut(s) 570
FauNDI CATATG 1 cut(s) 543
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 315, 444, 470
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 315, 444, 470
FspBI CTAG 1 cut(s) 341
GluI GCNGC 3 cut(s) 315, 444, 470
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 3 cut(s) 280, 483, 492
HapII CCGG 2 cut(s) 357, 417
HgaI GACGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 1 cut(s) 574
HincII GTYRAC 2 cut(s) 21, 370
HindII GTYRAC 2 cut(s) 21, 370
HinfI GANTC 5 cut(s) 101, 165, 303, 337, 535
HpaI GTTAAC 1 cut(s) 21
HpaII CCGG 2 cut(s) 357, 417
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 3 cut(s) 21, 217, 370
Hpy188I TCNGA 2 cut(s) 100, 511
Hpy188III TCNNGA 2 cut(s) 454, 593
Hpy8I GTNNAC 3 cut(s) 21, 217, 370
HpyAV CCTTC 3 cut(s) 291, 431, 599
HpyCH4III ACNGT 2 cut(s) 214, 523
HpyCH4V TGCA 4 cut(s) 37, 326, 446, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 489
HpyF3I CTNAG 2 cut(s) 179, 200
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 1 cut(s) 574
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 160, 502
LpnPI CCDG 9 cut(s) 104, 279, 306, 369, 370, 396, 430, 441, 474
Lsp1109I GCAGC 3 cut(s) 326, 430, 456
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 532, 581
MalI GATC 2 cut(s) 162, 504
MboI GATC 2 cut(s) 160, 502
MboII GAAGA 4 cut(s) 38, 218, 446, 524
MluCI AATT 6 cut(s) 43, 78, 111, 256, 457, 494
MlyI GAGTC 3 cut(s) 174, 312, 529
MnlI CCTC 4 cut(s) 98, 139, 508, 555
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 20, 117
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 357, 417
MspR9I CCNGG 3 cut(s) 294, 357, 384
Mva1269I GAATGC 2 cut(s) 35, 328
MvaI CCWGG 2 cut(s) 294, 384
MwoI GCNNNNNNNGC 2 cut(s) 323, 489
NciI CCSGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 543
NdeII GATC 2 cut(s) 160, 502
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 2 cut(s) 484, 551
NmuCI GTSAC 2 cut(s) 532, 581
NsiI ATGCAT 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 188
PctI GAATGC 2 cut(s) 35, 328
PfeI GAWTC 2 cut(s) 101, 337
PkrI GCNGC 3 cut(s) 316, 445, 471
PleI GAGTC 3 cut(s) 173, 311, 529
PpsI GAGTC 3 cut(s) 173, 311, 529
Psp6I CCWGG 2 cut(s) 292, 382
PspGI CCWGG 2 cut(s) 292, 382
PspN4I GGNNCC 2 cut(s) 484, 551
PspPI GGNCC 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 3 cut(s) 225, 353, 569
RsaNI GTAC 3 cut(s) 224, 352, 568
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 20, 117
SatI GCNGC 3 cut(s) 315, 444, 470
Sau3AI GATC 2 cut(s) 160, 502
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 3 cut(s) 174, 312, 529
ScrFI CCNGG 3 cut(s) 294, 357, 384
SetI ASST 5 cut(s) 70, 96, 144, 201, 442
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 213, 298
SfiI GGCCNNNNNGGCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 6 cut(s) 43, 78, 111, 256, 457, 494
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 292, 355, 382
TaaI ACNGT 2 cut(s) 214, 523
TaqI TCGA 1 cut(s) 163
TaqII GACCGA 1 cut(s) 495
TasI AATT 6 cut(s) 43, 78, 111, 256, 457, 494
TatI WGTACW 2 cut(s) 223, 567
TfiI GAWTC 2 cut(s) 101, 337
Tru1I TTAA 2 cut(s) 20, 117
Tru9I TTAA 2 cut(s) 20, 117
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 532, 581
TseI GCWGC 3 cut(s) 314, 443, 469
Tsp45I GTSAC 2 cut(s) 532, 581
TspDTI ATGAA 2 cut(s) 114, 335
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 256, 457
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.