Rmu_sc0007658.1_g000005

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007658.1
Physical Location & Seq
Reverse (-)
29140 .. 29806
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007658.1_g000005.1.cds

Sequence Viewer

Length: 351 bp
atggcagaagcaacaaagaggtatgcagttgttacaggatcaaacaaaggaattggattggaaactgtaaggcagttggactcaaatggaatcactgtggccttaactgctggagttgagaagaggggacttgaagctgttgagacactgaaaaagtctggcctctcatgccaagtgattttccaccaacttgatgtggctgaccctgctagtattgcttctttggcacacttcatcaaaacccagttcgggaagcttgatatcttggtgaacaatgcagggattggtggatccataattgatgctgatggtgctaaagctgcagttgcagctggaggacaaattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

11.85

Weight (kDa)

6.07

Isoelectric Point (pI)

15.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 46, 285, 298
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 4 cut(s) 137, 256, 320, 332
AluI AGCT 4 cut(s) 137, 256, 320, 332
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 3 cut(s) 46, 285, 298
AoxI GGCC 2 cut(s) 99, 160
ApeKI GCWGC 2 cut(s) 320, 329
AsuHPI GGTGA 1 cut(s) 280
BamHI GGATCC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 307, 341
BccI CCATC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 321, 330
BlsI GCNGC 2 cut(s) 322, 331
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 307, 341
BshFI GGCC 2 cut(s) 101, 162
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 101, 162
Bsp143I GATC 2 cut(s) 38, 290
BspANI GGCC 2 cut(s) 101, 162
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 46, 285, 298
BsrI ACTGG 1 cut(s) 244
BssMI GATC 2 cut(s) 38, 290
Bst4CI ACNGT 2 cut(s) 67, 97
Bst6I CTCTTC 1 cut(s) 116
BstKTI GATC 2 cut(s) 41, 293
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 38, 290
BstMWI GCNNNNNNNGC 9 cut(s) 107, 168, 206, 215, 224, 311, 320, 326, 329
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 307, 341
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 2 cut(s) 101, 162
BtsIMutI CAGTG 2 cut(s) 93, 146
CviAII CATG 1 cut(s) 168
CviJI RGCY 7 cut(s) 101, 137, 162, 200, 256, 320, 332
CviKI_1 RGCY 7 cut(s) 101, 137, 162, 200, 256, 320, 332
DpnI GATC 2 cut(s) 40, 292
DpnII GATC 2 cut(s) 38, 290
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 262
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 171
FaiI YATR 3 cut(s) 24, 169, 296
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 321, 330
Fsp4HI GCNGC 2 cut(s) 321, 330
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 321, 330
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 101, 162
Hin1II CATG 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 80, 90
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 67, 97
HpyCH4V TGCA 4 cut(s) 26, 278, 323, 329
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 168, 206, 215, 224, 311, 320, 326, 329
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 2 cut(s) 38, 290
LpnPI CCDG 7 cut(s) 21, 96, 144, 219, 257, 264, 318
Lsp1109I GCAGC 2 cut(s) 307, 341
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 292
MboI GATC 2 cut(s) 38, 290
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 290
MluCI AATT 3 cut(s) 51, 297, 342
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 12, 117, 173, 329
MseI TTAA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 332
MwoI GCNNNNNNNGC 9 cut(s) 107, 168, 206, 215, 224, 311, 320, 326, 329
NdeII GATC 2 cut(s) 38, 290
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 322, 331
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 321, 330
Sau3AI GATC 2 cut(s) 38, 290
SchI GAGTC 1 cut(s) 74
SetI ASST 5 cut(s) 23, 139, 258, 322, 334
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 321
Sse9I AATT 3 cut(s) 51, 297, 342
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 67, 97
TasI AATT 3 cut(s) 51, 297, 342
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 2 cut(s) 100, 153
TseI GCWGC 2 cut(s) 320, 329
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 2 cut(s) 100, 153
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.