Prupe.2G162300_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21304062 .. 21306430
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G162300.2

Sequence Viewer

Length: 897 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTCACAGGGGCCAATAAAGGGGTTGGATTTGGCACAGTTAAGCAGTTGGCTTCAAATGGGGTCACTGTGGTGTTAGCTGCTAGAGATGAGAAGAGGGGTCTTGAAGCCGTTGAAAAGTTAAAAGAGTTTGGCCTCTCCGACCTCGTGGTGTTTCATCAGCTTGATGTAGCAGACTCCATTAGCGTTGCTTCCTTTGCAGATTTTGTCAAAACCCAATATGGGAAACTTGATATCTTGGTAAACAATGCAGCAATTAATGGAAGCACAGTAACGCCTGAAGCTTTTAAATCAGCTGCAAGTGGTAGTAAGAAGGCTGAAGAAATCGATTGGAGTGCAATATCGACAACACCAAACTACGAGTTAGCAGAGGAATGCTTGAAAACAAACTACTATGGTACAAAAAGTGTGACTGCAGCACTTTTGCCCCTCCTTCAGCTATCCAATTCACCAAGAATCGTTAATGTTTCTTCCGGAGTTTCTAAGCTAACGAATTTTCCAAATGCATGGGCTAAGGAGGTACTAAGTGATGCTGAGAGCCTTACAGAAGAGAGAATTGATGCTGTGGTTAGTGGGTTTTTGGAAGACTTTAAACAAGGTTCTCTAGATTCCAAAAGCTGGCCTCCTATCTTTCCACCCTATTCAGTCTCAAAAGCAGCCGTGAATGCATACACTAGGATTCTGGCCAACAGGTATCCAAGTTTCTGCATCAATGCTGTCAGCCCTGGATTTGTCAAAACAGATTTGAGCTTCAATACCGGCATCTTAACTATCGACGAAGGTGCTGAAAGCCTCGTCAGGTTGGCGCTGCTCCCCAGTGGTGGTCCTACGGGCCATTACTTTAGCCGAAAAGAAGTGACACCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

31.93

Weight (kDa)

5.6

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 3 cut(s) 327, 366, 446
AfaI GTAC 2 cut(s) 427, 549
AfiI CCNNNNNNNGG 4 cut(s) 48, 249, 645, 848
AgsI TTSAA 5 cut(s) 84, 134, 143, 409, 781
AjnI CCWGG 1 cut(s) 751
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 8 cut(s) 107, 190, 311, 323, 466, 514, 645, 777
AluI AGCT 8 cut(s) 107, 190, 311, 323, 466, 514, 645, 777
Alw26I GTCTC 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 500
AoxI GGCC 5 cut(s) 39, 160, 647, 711, 859
ApeKI GCWGC 6 cut(s) 107, 278, 323, 443, 683, 835
ApoI RAATTY 1 cut(s) 520
AseI ATTAAT 1 cut(s) 285
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 3 cut(s) 39, 851, 859
AsuHPI GGTGA 1 cut(s) 468
AvaII GGWCC 1 cut(s) 851
BalI TGGCCA 1 cut(s) 713
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 6 cut(s) 94, 290, 310, 455, 695, 822
BceAI ACGGC 2 cut(s) 122, 671
BcgI CGANNNNNNTGC 4 cut(s) 344, 378, 791, 825
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 3 cut(s) 111, 632, 702
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 836
BfuI GTATCC 1 cut(s) 732
BisI GCNGC 6 cut(s) 108, 279, 324, 444, 684, 836
BlsI GCNGC 6 cut(s) 109, 280, 325, 445, 685, 837
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 1 cut(s) 851
BmgT120I GGNCC 3 cut(s) 39, 851, 859
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 4 cut(s) 547, 577, 744, 798
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 249, 645, 848
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 1 cut(s) 843
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 1 cut(s) 753
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 751
BseLI CCNNNNNNNGG 4 cut(s) 48, 249, 645, 848
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 843
BseXI GCAGC 6 cut(s) 94, 290, 310, 455, 695, 822
BshFI GGCC 5 cut(s) 41, 162, 649, 713, 861
BshVI ATCGAT 1 cut(s) 354
BsiSI CCGG 2 cut(s) 501, 786
BslI CCNNNNNNNGG 4 cut(s) 48, 249, 645, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 407, 697
BsnI GGCC 5 cut(s) 41, 162, 649, 713, 861
Bsp13I TCCGGA 1 cut(s) 500
BspANI GGCC 5 cut(s) 41, 162, 649, 713, 861
BspCNI CTCAG 1 cut(s) 553
BspDI ATCGAT 1 cut(s) 354
BspEI TCCGGA 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 1 cut(s) 843
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 751
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 3 cut(s) 67, 97, 298
Bst6I CTCTTC 2 cut(s) 116, 570
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 4 cut(s) 510, 540, 551, 561
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 1 cut(s) 835
BstMAI GTCTC 1 cut(s) 679
BstMWI GCNNNNNNNGC 2 cut(s) 224, 692
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 6 cut(s) 94, 290, 310, 455, 695, 822
BstV2I GAAGAC 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 354
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 5 cut(s) 41, 162, 649, 713, 861
BsuTUI ATCGAT 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 93, 850
Cac8I GCNNGC 1 cut(s) 647
CfoI GCGC 1 cut(s) 835
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 3 cut(s) 39, 851, 859
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 426, 548
CviAII CATG 1 cut(s) 534
CviQI GTAC 2 cut(s) 426, 548
DdeI CTNAG 4 cut(s) 510, 540, 551, 561
DraI TTTAAA 2 cut(s) 316, 619
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 851
Eco57I CTGAAG 3 cut(s) 327, 366, 446
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 2 cut(s) 535, 697
FaeI CATG 1 cut(s) 537
FaiI YATR 5 cut(s) 24, 249, 423, 535, 697
FatI CATG 1 cut(s) 533
Fnu4HI GCNGC 6 cut(s) 108, 279, 324, 444, 684, 836
Fsp4HI GCNGC 6 cut(s) 108, 279, 324, 444, 684, 836
FspBI CTAG 3 cut(s) 111, 632, 702
GlaI GCGC 1 cut(s) 834
GluI GCNGC 6 cut(s) 108, 279, 324, 444, 684, 836
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 5 cut(s) 41, 162, 649, 713, 861
HapII CCGG 2 cut(s) 501, 786
HhaI GCGC 1 cut(s) 835
Hin1II CATG 1 cut(s) 537
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 4 cut(s) 203, 483, 635, 706
HpaII CCGG 2 cut(s) 501, 786
HphI GGTGA 1 cut(s) 468
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 131, 501, 632
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 806
HpyAV CCTTC 3 cut(s) 334, 470, 800
HpyCH4III ACNGT 3 cut(s) 67, 97, 298
HpyCH4V TGCA 9 cut(s) 26, 227, 278, 326, 365, 443, 533, 695, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 692
HpyF3I CTNAG 4 cut(s) 510, 540, 551, 561
Hsp92II CATG 1 cut(s) 537
HspAI GCGC 1 cut(s) 833
Kpn2I TCCGGA 1 cut(s) 500
LmnI GCTCC 1 cut(s) 843
Lsp1109I GCAGC 6 cut(s) 94, 290, 310, 455, 695, 822
LweI GCATC 4 cut(s) 547, 577, 744, 798
MaeI CTAG 3 cut(s) 111, 632, 702
MaeIII GTNAC 5 cut(s) 31, 91, 298, 436, 883
MboII GAAGA 5 cut(s) 133, 359, 489, 587, 623
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 4 cut(s) 282, 472, 520, 582
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 34, 192
MnlI CCTC 9 cut(s) 12, 117, 173, 182, 391, 467, 538, 660, 830
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 2 cut(s) 535, 697
MroI TCCGGA 1 cut(s) 500
MscI TGGCCA 1 cut(s) 713
MseI TTAA 7 cut(s) 69, 149, 285, 315, 489, 618, 794
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 2 cut(s) 501, 786
MspR9I CCNGG 1 cut(s) 753
Mva1269I GAATGC 2 cut(s) 407, 697
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 224, 692
NlaIII CATG 1 cut(s) 537
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 4 cut(s) 31, 91, 436, 883
NsiI ATGCAT 2 cut(s) 535, 697
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 2 cut(s) 407, 697
PfeI GAWTC 3 cut(s) 483, 635, 706
PflMI CCANNNNNTGG 1 cut(s) 645
PkrI GCNGC 6 cut(s) 109, 280, 325, 445, 685, 837
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 39, 851, 859
PstI CTGCAG 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 427, 549
RsaNI GTAC 2 cut(s) 426, 548
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 7 cut(s) 69, 149, 285, 315, 489, 618, 794
SatI GCNGC 6 cut(s) 108, 279, 324, 444, 684, 836
Sau96I GGNCC 3 cut(s) 39, 851, 859
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 753
SfaNI GCATC 4 cut(s) 547, 577, 744, 798
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 4 cut(s) 282, 472, 520, 582
SspMI CTAG 3 cut(s) 111, 632, 702
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 3 cut(s) 67, 97, 298
TaqI TCGA 3 cut(s) 354, 371, 801
TasI AATT 4 cut(s) 282, 472, 520, 582
TfiI GAWTC 3 cut(s) 483, 635, 706
Tru1I TTAA 7 cut(s) 69, 149, 285, 315, 489, 618, 794
Tru9I TTAA 7 cut(s) 69, 149, 285, 315, 489, 618, 794
TscAI CASTG 2 cut(s) 100, 850
TseFI GTSAC 4 cut(s) 31, 91, 436, 883
TseI GCWGC 6 cut(s) 107, 278, 323, 443, 683, 835
Tsp45I GTSAC 4 cut(s) 31, 91, 436, 883
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 2 cut(s) 100, 850
Van91I CCANNNNNTGG 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 851
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 631
XspI CTAG 3 cut(s) 111, 632, 702
Zsp2I ATGCAT 2 cut(s) 535, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.