Rw1G021660

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
46009805 .. 46010828
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021660.1

Sequence Viewer

Length: 594 bp
ATGTTGGATTGTGAGTCCTCTCACACAATGTGTACGTGGAGATATAAACTAATCACTCAAACATATGAGTTAGCTGAAGAATGTGTGAAAATAAACTACTACGGTGCCAAGAAAATGACTGAAGCATTCCTTCCTCTCCTTCAGCTATCTGATTCTCCAAGAGTTTCCAATATTACTTCTGGCGTGGGACACATATACCAAATGAATGGAGAGATGTTGTTGAGTGATGCTGAGAATCTTACAGAAGAGAGAGTGGATGAGGTTTTGACGGAGTTTCTAAAAGACTTCAAAGAAGATATGCTGGAAACCAAAGGCTGGCCTACTTCTCTTTCTGCATATATACTCTCCAAAGCAGCCTTGAATGCATACACTAGAATTGTGGCCAAGAAGTACACAAACATCAGCGTCAATTGTGTCTGCCCTGGATTTGTTAAAACAGAAATGAGCTTCAATGCTGGTGTCTTAACCCCTGATGAAGCTGCTGAAATTATTGTGCGGTTAACAGTGTTTCCGAATGGCAATCCTTCTGGACTCTACTTCTCTTCAGAAGAAGTCTCACCATATAATATACTCTTTCAATTTTATACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

197

Amino Acids

22.26

Weight (kDa)

4.76

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 104 - 152 6.3e-08 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 109 - 149 8.1e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 315
AciI CCGC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 4 cut(s) 96, 125, 141, 528
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 2 cut(s) 34, 392
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 4 cut(s) 289, 361, 451, 578
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 4 cut(s) 74, 145, 447, 479
AluI AGCT 4 cut(s) 74, 145, 447, 479
Alw26I GTCTC 1 cut(s) 559
AoxI GGCC 2 cut(s) 317, 381
ApeKI GCWGC 2 cut(s) 353, 479
AsuHPI GGTGA 1 cut(s) 549
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 365, 466
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 354, 480
BlsI GCNGC 2 cut(s) 355, 481
Bme1390I CCNGG 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 365, 466
BshFI GGCC 2 cut(s) 319, 383
BshNI GGYRCC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 2 cut(s) 125, 367
BsnI GGCC 2 cut(s) 319, 383
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 319, 383
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 104, 505
Bst6I CTCTTC 2 cut(s) 240, 547
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 559
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 365, 466
BstXI CCANNNNNNTGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 319, 383
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 317
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 33, 391
CviJI RGCY 8 cut(s) 74, 145, 315, 319, 356, 383, 447, 479
CviKI_1 RGCY 8 cut(s) 74, 145, 315, 319, 356, 383, 447, 479
CviQI GTAC 2 cut(s) 33, 391
DdeI CTNAG 1 cut(s) 231
DraIII CACNNNGTG 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 240, 547
EarI CTCTTC 2 cut(s) 240, 547
Eco57I CTGAAG 4 cut(s) 96, 125, 141, 528
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 367
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 354, 480
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 354, 480
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 354, 480
HaeIII GGCC 2 cut(s) 319, 383
HgaI GACGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 4 cut(s) 14, 152, 235, 531
HpaI GTTAAC 1 cut(s) 501
HphI GGTGA 1 cut(s) 549
Hpy166II GTNNAC 3 cut(s) 33, 393, 501
Hpy188I TCNGA 3 cut(s) 151, 513, 547
Hpy188III TCNNGA 1 cut(s) 528
Hpy8I GTNNAC 3 cut(s) 33, 393, 501
HpyAV CCTTC 3 cut(s) 140, 149, 534
HpyCH4III ACNGT 2 cut(s) 104, 505
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 335, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 35
KspAI GTTAAC 1 cut(s) 501
LpnPI CCDG 8 cut(s) 165, 287, 301, 408, 435, 441, 483, 513
Lsp1109I GCAGC 2 cut(s) 365, 466
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 35
MboII GAAGA 5 cut(s) 89, 257, 305, 534, 560
MfeI CAATTG 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 4 cut(s) 375, 409, 486, 578
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 23, 525
MnlI CCTC 3 cut(s) 28, 144, 253
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 367
MscI TGGCCA 1 cut(s) 383
MseI TTAA 3 cut(s) 432, 464, 500
Msp20I TGGCCA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 2 cut(s) 125, 367
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeI CATATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 367
PctI GAATGC 2 cut(s) 125, 367
PfeI GAWTC 2 cut(s) 152, 235
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 2 cut(s) 355, 481
PleI GAGTC 2 cut(s) 22, 525
PpsI GAGTC 2 cut(s) 22, 525
Ppu21I YACGTR 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 2 cut(s) 34, 392
RsaNI GTAC 2 cut(s) 33, 391
SaqAI TTAA 3 cut(s) 432, 464, 500
SatI GCNGC 2 cut(s) 354, 480
SchI GAGTC 2 cut(s) 23, 525
ScrFI CCNGG 1 cut(s) 423
SetI ASST 6 cut(s) 38, 76, 147, 264, 449, 481
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 4 cut(s) 375, 409, 486, 578
SsiI CCGC 1 cut(s) 496
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 104, 505
TaiI ACGT 1 cut(s) 38
TasI AATT 4 cut(s) 375, 409, 486, 578
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 152, 235
Tru1I TTAA 3 cut(s) 432, 464, 500
Tru9I TTAA 3 cut(s) 432, 464, 500
TscAI CASTG 1 cut(s) 510
TseI GCWGC 2 cut(s) 353, 479
TspDTI ATGAA 2 cut(s) 218, 489
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 315
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.