Rmu_sc0026975.1_g000001

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026975.1
OG0000170
Physical Location & Seq
Forward (+)
1 .. 1038
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026975.1_g000001.1.cds

Sequence Viewer

Length: 617 bp
gaattggtggagttatagttgatgctgatggttttaaagctgcaattgaatctcgtgctgaaggaggacagattgattggaaaaagttgatgactgaaacttacgagttaacagaagaatgcttgcaaataaattattatggtgctaaaagaacagctgaagcactaattccagtcctccagctatctgattcaccaagaattgttaatgtttcatcctctatggggaagttaaagaacataccaagtgatcgagtgaaaggagttcttagtactgatgtggagaacctaagtgaagagagtgtagatgaagtactgacagagtttctaaacgatttcaaagagaatttacttgaaagcaagggttggccttctatgatgccaggctatacagtttcaaaagcagcaatgaatgcatatacaaggattctagccaagaagtaccccagttttcgcgtcaactctgtctgccctggctatgtcaaaacagatataaacttcaatactggcgtcttgcctgttgaagaaggtgctgcaagtgtcgtgaatttagcattgctgcctaatgatggccccacaggccaattctttgatcggtctgaagtaccaagtctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

204

Amino Acids

22.29

Weight (kDa)

4.72

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 455
AcsI RAATTY 2 cut(s) 345, 546
AcuI CTGAAG 2 cut(s) 80, 179
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 4 cut(s) 273, 314, 442, 605
AfiI CCNNNNNNNGG 2 cut(s) 224, 568
AgsI TTSAA 6 cut(s) 49, 339, 355, 398, 501, 523
AjnI CCWGG 2 cut(s) 381, 471
AluBI AGCT 3 cut(s) 40, 157, 183
AluI AGCT 3 cut(s) 40, 157, 183
AoxI GGCC 3 cut(s) 367, 570, 579
ApeKI GCWGC 4 cut(s) 40, 403, 532, 558
ApoI RAATTY 2 cut(s) 345, 546
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 185
BauI CACGAG 1 cut(s) 53
BbvI GCAGC 4 cut(s) 27, 415, 519, 545
BccI CCATC 2 cut(s) 22, 562
BciT130I CCWGG 2 cut(s) 383, 473
BfaI CTAG 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 4 cut(s) 41, 404, 533, 559
BlsI GCNGC 4 cut(s) 42, 405, 534, 560
BmcAI AGTACT 2 cut(s) 273, 314
Bme1390I CCNGG 2 cut(s) 383, 473
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 2 cut(s) 383, 473
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 12, 368
BmuI ACTGGG 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 568
Bse1I ACTGG 3 cut(s) 172, 446, 510
Bse3DI GCAATG 2 cut(s) 413, 553
BseBI CCWGG 2 cut(s) 383, 473
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 224, 568
BseMI GCAATG 2 cut(s) 413, 553
BseNI ACTGG 3 cut(s) 172, 446, 510
BseXI GCAGC 4 cut(s) 27, 415, 519, 545
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 369, 572, 581
BslI CCNNNNNNNGG 2 cut(s) 224, 568
BsmI GAATGC 2 cut(s) 124, 417
BsnI GGCC 3 cut(s) 369, 572, 581
Bsp143I GATC 2 cut(s) 249, 591
BspANI GGCC 3 cut(s) 369, 572, 581
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 573
BsrDI GCAATG 2 cut(s) 413, 553
BsrI ACTGG 3 cut(s) 172, 446, 510
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 249, 591
BssNI GRCGYC 1 cut(s) 509
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 383, 473
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 509
BstAPI GCANNNNNTGC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 268, 289
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 2 cut(s) 252, 594
BstMBI GATC 2 cut(s) 249, 591
BstMWI GCNNNNNNNGC 2 cut(s) 412, 578
BstNI CCWGG 2 cut(s) 383, 473
BstSCI CCNGG 2 cut(s) 381, 471
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 4 cut(s) 27, 415, 519, 545
BsuRI GGCC 3 cut(s) 369, 572, 581
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 2 cut(s) 444, 498
Csp6I GTAC 4 cut(s) 272, 313, 441, 604
CviJI RGCY 9 cut(s) 40, 157, 183, 369, 386, 433, 476, 572, 581
CviKI_1 RGCY 9 cut(s) 40, 157, 183, 369, 386, 433, 476, 572, 581
CviQI GTAC 4 cut(s) 272, 313, 441, 604
DdeI CTNAG 2 cut(s) 268, 289
DpnI GATC 2 cut(s) 251, 593
DpnII GATC 2 cut(s) 249, 591
DraI TTTAAA 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 80, 179
EcoRII CCWGG 2 cut(s) 381, 471
EcoT22I ATGCAT 1 cut(s) 417
FalI AAGNNNNNCTT 2 cut(s) 251, 283
Fnu4HI GCNGC 4 cut(s) 41, 404, 533, 559
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 41, 404, 533, 559
FspBI CTAG 1 cut(s) 430
GluI GCNGC 4 cut(s) 41, 404, 533, 559
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 3 cut(s) 369, 572, 581
HgaI GACGC 2 cut(s) 444, 498
Hin1I GRCGYC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 110, 459
HindII GTYRAC 2 cut(s) 110, 459
HinfI GANTC 3 cut(s) 49, 190, 426
HpaI GTTAAC 1 cut(s) 110
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 110, 459
Hpy188I TCNGA 2 cut(s) 189, 600
Hpy188III TCNNGA 1 cut(s) 543
Hpy8I GTNNAC 2 cut(s) 110, 459
HpyAV CCTTC 3 cut(s) 55, 380, 520
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 43, 126, 415, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 578
HpyF3I CTNAG 2 cut(s) 268, 289
Hsp92I GRCGYC 1 cut(s) 509
KspAI GTTAAC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 249, 591
Lsp1109I GCAGC 4 cut(s) 27, 415, 519, 545
LweI GCATC 2 cut(s) 12, 368
MaeI CTAG 1 cut(s) 430
MalI GATC 2 cut(s) 251, 593
MboI GATC 2 cut(s) 249, 591
MboII GAAGA 3 cut(s) 127, 307, 535
MfeI CAATTG 1 cut(s) 44
MluCI AATT 8 cut(s) 2, 44, 132, 167, 200, 345, 546, 583
MnlI CCTC 3 cut(s) 58, 187, 228
Mph1103I ATGCAT 1 cut(s) 417
MseI TTAA 5 cut(s) 35, 109, 206, 232, 615
MspA1I CMGCKG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 383, 473
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 2 cut(s) 124, 417
MvaI CCWGG 2 cut(s) 383, 473
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 412, 578
NdeII GATC 2 cut(s) 249, 591
NlaIV GGNNCC 1 cut(s) 573
NsiI ATGCAT 1 cut(s) 417
PctI GAATGC 2 cut(s) 124, 417
PfeI GAWTC 3 cut(s) 49, 190, 426
PkrI GCNGC 4 cut(s) 42, 405, 534, 560
Psp6I CCWGG 2 cut(s) 381, 471
PspGI CCWGG 2 cut(s) 381, 471
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 4 cut(s) 273, 314, 442, 605
RsaNI GTAC 4 cut(s) 272, 313, 441, 604
SaqAI TTAA 5 cut(s) 35, 109, 206, 232, 615
SatI GCNGC 4 cut(s) 41, 404, 533, 559
Sau3AI GATC 2 cut(s) 249, 591
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 2 cut(s) 273, 314
ScrFI CCNGG 2 cut(s) 383, 473
SetI ASST 5 cut(s) 42, 159, 185, 290, 531
SfaNI GCATC 2 cut(s) 12, 368
SfiI GGCCNNNNNGGCC 1 cut(s) 578
Sse9I AATT 8 cut(s) 2, 44, 132, 167, 200, 345, 546, 583
SspMI CTAG 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 381, 471
TaaI ACNGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 252
TaqII GACCGA 1 cut(s) 584
TasI AATT 8 cut(s) 2, 44, 132, 167, 200, 345, 546, 583
TatI WGTACW 2 cut(s) 271, 312
TfiI GAWTC 3 cut(s) 49, 190, 426
Tru1I TTAA 5 cut(s) 35, 109, 206, 232, 615
Tru9I TTAA 5 cut(s) 35, 109, 206, 232, 615
TseI GCWGC 4 cut(s) 40, 403, 532, 558
TspDTI ATGAA 3 cut(s) 203, 323, 424
XapI RAATTY 2 cut(s) 345, 546
XspI CTAG 1 cut(s) 430
ZrmI AGTACT 2 cut(s) 273, 314
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.