pycom04g09460

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000170
Physical Location & Seq
Reverse (-)
12088600 .. 12089077
478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09460.1

Sequence Viewer

Length: 390 bp
ATGTTAAGTCATAATTTTCCAAATGGATGGGCTAAAGAGGTACTTAGTGATGCTGAAAGCCTTACAGAAGAGAGAATAGATGCTGTTTTGAGTGAGTTTTTGGAAGACTATAAACAAGGCTTGCTAGAAACCAAAAGCTGGCCTCTTATCTTCCCAGCTTATAAGGTCTCGAAAGCAGCCCTGAATGCGTACACTAGGACTCTGGCCAAGAAGTATCCAAAATTCTGCATCAACTGTGGCAGCCCTGGATCAGTCAAAACAGATATGACCTTCAATTTTGGCATCTTAACCATTGACGAAGGAGCTGAGAGCATTGTCAGGTTGGCACTACTCCCCAATGGTGGTCCTACTGGCCTCTACTTTGTTCGGAAAGAAGTGACACCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

5.83

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 138
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 42, 191
AfiI CCNNNNNNNGG 2 cut(s) 138, 341
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 138, 158, 305
AluI AGCT 3 cut(s) 138, 158, 305
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 256
AoxI GGCC 3 cut(s) 140, 204, 352
ApeKI GCWGC 2 cut(s) 176, 240
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 344
AvaII GGWCC 1 cut(s) 344
BalI TGGCCA 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 188, 252
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 125, 195
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 2 cut(s) 177, 241
BlsI GCNGC 2 cut(s) 178, 242
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 40, 70, 237, 291
BpiI GAAGAC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 341
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 138, 341
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 2 cut(s) 188, 252
BseYI CCCAGC 1 cut(s) 154
BshFI GGCC 3 cut(s) 142, 206, 354
BslI CCNNNNNNNGG 2 cut(s) 138, 341
BsmAI GTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 142, 206, 354
Bso31I GGTCTC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 248
BspANI GGCC 3 cut(s) 142, 206, 354
BspCNI CTCAG 1 cut(s) 298
BspPI GGATC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 122, 140
BstDEI CTNAG 2 cut(s) 44, 306
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 188, 252
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 3 cut(s) 142, 206, 354
BtsCI GGATG 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 122, 140
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 41, 190
CviQI GTAC 2 cut(s) 41, 190
DdeI CTNAG 2 cut(s) 44, 306
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 244
FaiI YATR 4 cut(s) 12, 111, 162, 266
FalI AAGNNNNNCTT 2 cut(s) 27, 59
Fnu4HI GCNGC 2 cut(s) 177, 241
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 177, 241
FspBI CTAG 2 cut(s) 125, 195
GluI GCNGC 2 cut(s) 177, 241
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 3 cut(s) 142, 206, 354
HinfI GANTC 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 280, 293
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 44, 306
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 8 cut(s) 124, 168, 188, 194, 231, 258, 304, 336
Lsp1109I GCAGC 2 cut(s) 188, 252
LweI GCATC 4 cut(s) 40, 70, 237, 291
MaeI CTAG 2 cut(s) 125, 195
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 3 cut(s) 80, 116, 142
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 3 cut(s) 13, 221, 274
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 31, 153, 365
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 2 cut(s) 5, 287
Msp20I TGGCCA 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 376
PctI GAATGC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 2 cut(s) 178, 242
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 344
RsaI GTAC 2 cut(s) 42, 191
RsaNI GTAC 2 cut(s) 41, 190
SaqAI TTAA 2 cut(s) 5, 287
SatI GCNGC 2 cut(s) 177, 241
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 246
SetI ASST 8 cut(s) 42, 140, 160, 168, 272, 307, 323, 385
SfaNI GCATC 4 cut(s) 40, 70, 237, 291
SinI GGWCC 1 cut(s) 344
Sse9I AATT 3 cut(s) 13, 221, 274
SspMI CTAG 2 cut(s) 125, 195
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 13, 221, 274
Tru1I TTAA 2 cut(s) 5, 287
Tru9I TTAA 2 cut(s) 5, 287
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 176, 240
Tsp45I GTSAC 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 221
XspI CTAG 2 cut(s) 125, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.