Prupe.4G240800_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000170
Physical Location & Seq
Reverse (-)
15845737 .. 15847400
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G240800.1

Sequence Viewer

Length: 900 bp
ATGGCAGAAGTAGCAAAGAAGTATGCAGTTGTTACAGGTTCAAATCAGGGGATTGGATTTGGAACAGTCAGGAAGTTGGCTTCAAATGGGATCATGGTGGTGTTAACTGCTTTAGATAACAAAATGGGTCTTGAAGCTATTGAAAAATTGAAAGAGTGTGGCATCTCTGACCTGGTGGTTTTTCATCAACTTGATGTAACAAACACTGCTAGCATTGCTTCCCTTGCAGATTTTGTCAAAACCCAATTTGGGAAACTAGATATCTTGGTAAAAAATGCAGGGGTTAGTGGAACCATTGTGGACCCTGAAGCTATGAGAGCTGCTGCAGCTGCAGGTATTGGTAAGGATGGTGTGGGAGTCAATTGGAGTGAAATAATGACTCAAACGTATGAGTTAGCTGAGGTATGTGTGAAAACAAACTACTATGGTGCCAAGAAAATGACCAAAGCACTCCTTCCTCTCCTTCAGCTATCTGATTCACCAAGAGTTGTCAGTCTTTCTTCCAGCATGGGATCGTTAAAGCACATACCAAATGAATGGGCCAAAGGGGTGTTAAGTGATGCTGAGAAACTTACAGAAGAGAGAATAGATGATATTTTGAATGAGTTTCTCAAAGACTTCAAAGAAGATATTCTAGAAACCAAAGGCTGGCCTACTTCCCTCTCTGCCTATATACTCTCGAAAGCAGCTGTGAACGCTTTCACTAGAATGATGGCCAGGAAGCACCCAAACATCTGCATCAATAGTGTAGATCCTGGATTTGTCAAAACAGATATGAACTTCAATACTGGCATGTTAACCATTGATGAAGGTGCTGAGAGTGTTGTGAGGTTAGCTGTGGTTCCAAATGGCAGCCCTTCTGGCCTCTACTTCCATTTACAAGAAGTCTCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.24

Weight (kDa)

5.68

Isoelectric Point (pI)

23.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 648
AclWI GGATC 3 cut(s) 98, 520, 746
AcoI YGGCCR 1 cut(s) 714
AcuI CTGAAG 2 cut(s) 327, 449
AfiI CCNNNNNNNGG 2 cut(s) 249, 648
AgsI TTSAA 8 cut(s) 42, 84, 134, 143, 151, 601, 622, 784
AjnI CCWGG 3 cut(s) 171, 716, 754
AluBI AGCT 8 cut(s) 137, 311, 320, 329, 398, 469, 689, 836
AluI AGCT 8 cut(s) 137, 311, 320, 329, 398, 469, 689, 836
Alw26I GTCTC 1 cut(s) 892
AlwI GGATC 3 cut(s) 98, 520, 746
AoxI GGCC 4 cut(s) 540, 650, 714, 862
ApeKI GCWGC 6 cut(s) 320, 323, 326, 329, 686, 852
Asp700I GAANNNNTTC 2 cut(s) 630, 698
AspS9I GGNCC 2 cut(s) 301, 540
AsuHPI GGTGA 2 cut(s) 471, 882
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 1 cut(s) 428
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 6 cut(s) 307, 310, 316, 338, 698, 864
BccI CCATC 2 cut(s) 341, 706
BciT130I CCWGG 3 cut(s) 173, 718, 756
BcoDI GTCTC 1 cut(s) 892
BfaI CTAG 4 cut(s) 210, 257, 635, 705
BfmI CTRYAG 2 cut(s) 324, 330
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 861
BisI GCNGC 6 cut(s) 321, 324, 327, 330, 687, 853
BlsI GCNGC 6 cut(s) 322, 325, 328, 331, 688, 854
Bme1390I CCNGG 3 cut(s) 173, 718, 756
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 301, 540
BmiI GGNNCC 4 cut(s) 292, 303, 430, 843
BmrFI CCNGG 3 cut(s) 173, 718, 756
BmsI GCATC 3 cut(s) 171, 550, 747
BmtI GCTAGC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 399
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 648
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 3 cut(s) 173, 718, 756
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 249, 648
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 390, 555, 807
BseNI ACTGG 1 cut(s) 793
BseXI GCAGC 6 cut(s) 307, 310, 316, 338, 698, 864
BshFI GGCC 4 cut(s) 542, 652, 716, 864
BshNI GGYRCC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 249, 648
BsmAI GTCTC 1 cut(s) 892
BsnI GGCC 4 cut(s) 542, 652, 716, 864
Bsp143I GATC 3 cut(s) 90, 512, 751
BspANI GGCC 4 cut(s) 542, 652, 716, 864
BspCNI CTCAG 3 cut(s) 391, 556, 808
BspLI GGNNCC 4 cut(s) 292, 303, 430, 843
BspMAI CTGCAG 2 cut(s) 328, 334
BspMI ACCTGC 1 cut(s) 323
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 3 cut(s) 98, 520, 746
BspT107I GGYRCC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 793
BssMI GATC 3 cut(s) 90, 512, 751
Bst2UI CCWGG 3 cut(s) 173, 718, 756
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 211, 650
BstDEI CTNAG 3 cut(s) 399, 564, 816
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 3 cut(s) 93, 515, 754
BstMAI GTCTC 1 cut(s) 892
BstMBI GATC 3 cut(s) 90, 512, 751
BstMWI GCNNNNNNNGC 8 cut(s) 11, 215, 224, 317, 326, 329, 695, 861
BstNI CCWGG 3 cut(s) 173, 718, 756
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 3 cut(s) 171, 716, 754
BstSFI CTRYAG 2 cut(s) 324, 330
BstV1I GCAGC 6 cut(s) 307, 310, 316, 338, 698, 864
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 4 cut(s) 542, 652, 716, 864
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 211, 650
Cfr13I GGNCC 2 cut(s) 301, 540
CsiI ACCWGGT 1 cut(s) 171
CviAII CATG 3 cut(s) 94, 508, 793
DdeI CTNAG 3 cut(s) 399, 564, 816
DpnI GATC 3 cut(s) 92, 514, 753
DpnII GATC 3 cut(s) 90, 512, 751
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 327, 449
EcoRII CCWGG 3 cut(s) 171, 716, 754
EcoRV GATATC 1 cut(s) 262
FaeI CATG 3 cut(s) 97, 511, 796
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 3 cut(s) 93, 507, 792
Fnu4HI GCNGC 6 cut(s) 321, 324, 327, 330, 687, 853
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 6 cut(s) 321, 324, 327, 330, 687, 853
FspBI CTAG 4 cut(s) 210, 257, 635, 705
GluI GCNGC 6 cut(s) 321, 324, 327, 330, 687, 853
HaeIII GGCC 4 cut(s) 542, 652, 716, 864
Hin1II CATG 3 cut(s) 97, 511, 796
HincII GTYRAC 2 cut(s) 105, 798
HindII GTYRAC 2 cut(s) 105, 798
HinfI GANTC 3 cut(s) 357, 379, 476
HpaI GTTAAC 2 cut(s) 105, 798
HphI GGTGA 2 cut(s) 471, 882
Hpy166II GTNNAC 4 cut(s) 105, 301, 694, 798
Hpy188I TCNGA 2 cut(s) 169, 475
Hpy188III TCNNGA 4 cut(s) 70, 131, 635, 679
Hpy8I GTNNAC 4 cut(s) 105, 301, 694, 798
HpyAV CCTTC 4 cut(s) 464, 473, 803, 867
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 6 cut(s) 26, 227, 278, 326, 332, 738
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 215, 224, 317, 326, 329, 695, 861
HpyF3I CTNAG 3 cut(s) 399, 564, 816
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 3 cut(s) 97, 511, 796
KspAI GTTAAC 2 cut(s) 105, 798
Kzo9I GATC 3 cut(s) 90, 512, 751
Lsp1109I GCAGC 6 cut(s) 307, 310, 316, 338, 698, 864
LweI GCATC 3 cut(s) 171, 550, 747
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 4 cut(s) 210, 257, 635, 705
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 31, 196
MalI GATC 3 cut(s) 92, 514, 753
MboI GATC 3 cut(s) 90, 512, 751
MboII GAAGA 3 cut(s) 492, 590, 638
MfeI CAATTG 1 cut(s) 361
MflI RGATCY 1 cut(s) 751
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 3 cut(s) 146, 245, 361
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 2 cut(s) 366, 373
MnlI CCTC 5 cut(s) 394, 468, 671, 822, 875
Mox20I TGGCCA 1 cut(s) 716
MroXI GAANNNNTTC 2 cut(s) 630, 698
MscI TGGCCA 1 cut(s) 716
MseI TTAA 4 cut(s) 104, 518, 554, 797
MslI CAYNNNNRTG 2 cut(s) 98, 707
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 329, 689
MspR9I CCNGG 3 cut(s) 173, 718, 756
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 3 cut(s) 173, 718, 756
MwoI GCNNNNNNNGC 8 cut(s) 11, 215, 224, 317, 326, 329, 695, 861
NdeII GATC 3 cut(s) 90, 512, 751
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 97, 511, 796
NlaIV GGNNCC 4 cut(s) 292, 303, 430, 843
NspI RCATGY 1 cut(s) 796
PdmI GAANNNNTTC 2 cut(s) 630, 698
PfeI GAWTC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 648
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 6 cut(s) 322, 325, 328, 331, 688, 854
PleI GAGTC 2 cut(s) 365, 373
PpsI GAGTC 2 cut(s) 365, 373
Psp6I CCWGG 3 cut(s) 171, 716, 754
PspGI CCWGG 3 cut(s) 171, 716, 754
PspN4I GGNNCC 4 cut(s) 292, 303, 430, 843
PspPI GGNCC 2 cut(s) 301, 540
PstI CTGCAG 2 cut(s) 328, 334
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 2 cut(s) 329, 689
RseI CAYNNNNRTG 2 cut(s) 98, 707
SaqAI TTAA 4 cut(s) 104, 518, 554, 797
SatI GCNGC 6 cut(s) 321, 324, 327, 330, 687, 853
Sau3AI GATC 3 cut(s) 90, 512, 751
Sau96I GGNCC 2 cut(s) 301, 540
SchI GAGTC 2 cut(s) 366, 373
ScrFI CCNGG 3 cut(s) 173, 718, 756
SexAI ACCWGGT 1 cut(s) 171
SfaNI GCATC 3 cut(s) 171, 550, 747
SfcI CTRYAG 2 cut(s) 324, 330
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 2 cut(s) 98, 707
Sse9I AATT 3 cut(s) 146, 245, 361
SspMI CTAG 4 cut(s) 210, 257, 635, 705
StyD4I CCNGG 3 cut(s) 171, 716, 754
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 680
TasI AATT 3 cut(s) 146, 245, 361
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 4 cut(s) 104, 518, 554, 797
Tru9I TTAA 4 cut(s) 104, 518, 554, 797
TscAI CASTG 1 cut(s) 211
TseI GCWGC 6 cut(s) 320, 323, 326, 329, 686, 852
TspDTI ATGAA 4 cut(s) 173, 549, 791, 822
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 301
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 1 cut(s) 796
XmnI GAANNNNTTC 2 cut(s) 630, 698
XspI CTAG 4 cut(s) 210, 257, 635, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.