pycom01g07820

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000170
Physical Location & Seq
Forward (+)
8812461 .. 8814463
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07820.1

Sequence Viewer

Length: 339 bp
ATGGCAGAAGCAACAAAAAGGTATGCAGTTGTGACAGGGGCAAACAAAGGATTAGGATTAGCAGTTGTCAAGCGGTTGGCATCAGATGGATTTACTGTGGTCTTAACTGCCAGAGATGAGAAAAGGGGTCTTGAAGCCGTTGACAAACTCAGTCAGTCTGGCTTGGCAGGTTCAGTGGTTTTTCATCAACTTGATGTGGCTAACCCTGCAAACATTGACTCTTTGGCGGAGTTCATCAAAACCCAGTTTGGGAAACTCGATATCTTGGTTAAAAAATTTAGACCAGAAGAAGGGTTAGAGCAAAAAAGATGTTTCTGGGGTAAAAATTTTAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

113

Amino Acids

12.33

Weight (kDa)

9.56

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 91 5.1e-18 short chain dehydrogenase
KR PF08659 10 - 86 5.6e-07 KR domain
adh_short_C2 PF13561 13 - 91 8.4e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AciI CCGC 2 cut(s) 73, 227
AcsI RAATTY 2 cut(s) 275, 325
AfiI CCNNNNNNNGG 2 cut(s) 249, 290
AgsI TTSAA 1 cut(s) 134
ApoI RAATTY 2 cut(s) 275, 325
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 290
Bse1I ACTGG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 249, 290
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 249, 290
BspACI CCGC 2 cut(s) 73, 227
BspCNI CTCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 158
CviJI RGCY 3 cut(s) 137, 162, 200
CviKI_1 RGCY 3 cut(s) 137, 162, 200
DdeI CTNAG 1 cut(s) 149
EciI GGCGGA 1 cut(s) 242
Eco32I GATATC 1 cut(s) 262
EcoRV GATATC 1 cut(s) 262
FaiI YATR 1 cut(s) 24
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 26, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 149
LpnPI CCDG 8 cut(s) 21, 124, 144, 153, 219, 257, 297, 301
LweI GCATC 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 1 cut(s) 299
MluCI AATT 2 cut(s) 275, 325
MlyI GAGTC 1 cut(s) 212
MseI TTAA 2 cut(s) 104, 270
MwoI GCNNNNNNNGC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 31
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 104, 270
SchI GAGTC 1 cut(s) 212
SetI ASST 3 cut(s) 23, 172, 335
SfaNI GCATC 1 cut(s) 89
Sse9I AATT 2 cut(s) 275, 325
SsiI CCGC 2 cut(s) 73, 227
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 258
TasI AATT 2 cut(s) 275, 325
Tru1I TTAA 2 cut(s) 104, 270
Tru9I TTAA 2 cut(s) 104, 270
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 173, 223
TspRI CASTG 1 cut(s) 180
XapI RAATTY 2 cut(s) 275, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.