Prupe.2G160700_v2.0.a1

( )-neomenthol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21250950 .. 21253041
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G160700.2

Sequence Viewer

Length: 897 bp
ATGGCAGAAGTAACAAAGAGGTATGCAATTGTTACTGGAGCAAACAAAGGCGTAGGATTGGAAACTGTCAGGCAGTTGGCCTCAAATGGATTTATTGTAGTCTTGACTGCCAGAGATGGCAAGAGGGGTCTTGAAGCTGTTGAGAAACTCAAAGAGTCTGGCCTCTCTGGTCAAGTGGTTTTTCATCAACTTGATGTAGCTAACCCTGCTAGTGTTGCTTCCTTGGCAGACTTCATCAAAACCCAGTTTGGGAAACTGGATATCTTGGTGAACAATGCAGGAATTTTTGGAAGCATAATAGATGTTGATGCTTCTAAAGCTGCTGTAGCCTCTGGTGCCATGGCAAGAGGAGAAGTTGATTTGAGTAAACTAGTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATAAACTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATCCCACTCCTCCAGTTTTCTGACTCACCGAGAATTGTTAATGTTTCTGCTGGCTTGGGGATGTTAAACAACATACCAAGCGATTGGGCTAGAGGAGTTTTTACTGATGCCGAAAACCTAACAGAAGAGAGAGTAGATGAGGTACTGACTGAGCTTCTAAAAGATTTCAAGGAGGGTTCACTTGAAAGTAAGGGCTGGCCTTCTTCTATGCCTGCCTATATAGTCTCAAAAGCAGCACTGAACGCATATACAAGGATTCTAGCAAAGAAGTACCCCAATTTTCGTATCAATTCAGTCTGCCCTGGCTATGTCAAAACAGATATGAACTTCAATGCCGGCCTCTTGCCTGTCGAAGAAGGTGGTGCCAGGGTTGTGAAGTTAGCATTGCTGCCCAATGATGGCCCTACTGGCTCCTTCTTTGTTCAGAATGAAGTGTCGGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

32.04

Weight (kDa)

5.1

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 335, 812
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 594, 722
AfiI CCNNNNNNNGG 2 cut(s) 249, 848
AgsI TTSAA 4 cut(s) 134, 619, 635, 781
AhlI ACTAGT 1 cut(s) 370
AjnI CCWGG 2 cut(s) 751, 815
AluBI AGCT 5 cut(s) 137, 200, 320, 440, 604
AluI AGCT 5 cut(s) 137, 200, 320, 440, 604
Alw26I GTCTC 1 cut(s) 679
AoxI GGCC 5 cut(s) 78, 160, 647, 787, 850
ApeKI GCWGC 3 cut(s) 320, 683, 838
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 280, 468
BanI GGYRCC 2 cut(s) 335, 812
BbvI GCAGC 3 cut(s) 307, 695, 825
BccI CCATC 2 cut(s) 110, 842
BciT130I CCWGG 2 cut(s) 753, 817
BcoDI GTCTC 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 4 cut(s) 210, 371, 540, 710
BfmI CTRYAG 1 cut(s) 324
BglI GCCNNNNNGGC 1 cut(s) 858
BisI GCNGC 3 cut(s) 321, 684, 839
BlsI GCNGC 3 cut(s) 322, 685, 840
Bme1390I CCNGG 2 cut(s) 753, 817
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 3 cut(s) 337, 814, 862
BmrFI CCNGG 2 cut(s) 753, 817
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 298, 547
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 2 cut(s) 57, 446
BsaJI CCNNGG 4 cut(s) 222, 339, 751, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 848
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 5 cut(s) 40, 244, 261, 463, 862
Bse3DI GCAATG 1 cut(s) 833
BseBI CCWGG 2 cut(s) 753, 817
BseDI CCNNGG 4 cut(s) 222, 339, 751, 816
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 2 cut(s) 249, 848
BseMI GCAATG 1 cut(s) 833
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 5 cut(s) 40, 244, 261, 463, 862
BseRI GAGGAG 3 cut(s) 363, 449, 558
BseXI GCAGC 3 cut(s) 307, 695, 825
BshFI GGCC 5 cut(s) 80, 162, 649, 789, 852
BshNI GGYRCC 2 cut(s) 335, 812
BsiSI CCGG 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 249, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 5 cut(s) 80, 162, 649, 789, 852
Bsp143I GATC 1 cut(s) 889
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 5 cut(s) 80, 162, 649, 789, 852
BspCNI CTCAG 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 337, 814, 862
BspT107I GGYRCC 2 cut(s) 335, 812
BsrDI GCAATG 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 5 cut(s) 40, 244, 261, 463, 862
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 4 cut(s) 222, 339, 751, 816
BssMI GATC 1 cut(s) 889
BssT1I CCWWGG 2 cut(s) 222, 339
Bst2UI CCWGG 2 cut(s) 753, 817
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 570
BstC8I GCNNGC 5 cut(s) 407, 502, 647, 663, 787
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 1 cut(s) 892
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 1 cut(s) 889
BstMWI GCNNNNNNNGC 8 cut(s) 206, 215, 224, 317, 326, 335, 692, 858
BstNI CCWGG 2 cut(s) 753, 817
BstSCI CCNGG 2 cut(s) 751, 815
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 307, 695, 825
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 5 cut(s) 80, 162, 649, 789, 852
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 5 cut(s) 407, 502, 647, 663, 787
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 851
Csp6I GTAC 2 cut(s) 593, 721
CviAII CATG 1 cut(s) 340
CviQI GTAC 2 cut(s) 593, 721
DdeI CTNAG 1 cut(s) 600
DpnI GATC 1 cut(s) 891
DpnII GATC 1 cut(s) 889
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 2 cut(s) 222, 339
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 751, 815
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 2 cut(s) 222, 339
ErhI CCWWGG 2 cut(s) 222, 339
FaeI CATG 1 cut(s) 343
FatI CATG 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 321, 684, 839
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 3 cut(s) 321, 684, 839
FspBI CTAG 4 cut(s) 210, 371, 540, 710
GluI GCNGC 3 cut(s) 321, 684, 839
GsuI CTGGAG 2 cut(s) 57, 446
HaeIII GGCC 5 cut(s) 80, 162, 649, 789, 852
HapII CCGG 1 cut(s) 786
Hin1II CATG 1 cut(s) 343
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 3 cut(s) 155, 473, 706
HpaI GTTAAC 1 cut(s) 393
HpaII CCGG 1 cut(s) 786
HphI GGTGA 2 cut(s) 280, 468
Hpy166II GTNNAC 4 cut(s) 271, 368, 393, 629
Hpy188I TCNGA 3 cut(s) 472, 876, 889
Hpy188III TCNNGA 2 cut(s) 103, 131
Hpy8I GTNNAC 4 cut(s) 271, 368, 393, 629
HpyAV CCTTC 3 cut(s) 660, 800, 874
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 26, 278, 409
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 215, 224, 317, 326, 335, 692, 858
HpyF3I CTNAG 1 cut(s) 600
Hsp92II CATG 1 cut(s) 343
KroI GCCGGC 1 cut(s) 785
KroNI GCCGGC 1 cut(s) 787
KspAI GTTAAC 1 cut(s) 393
Kzo9I GATC 1 cut(s) 889
LmnI GCTCC 2 cut(s) 38, 866
Lsp1109I GCAGC 3 cut(s) 307, 695, 825
LweI GCATC 2 cut(s) 298, 547
MaeI CTAG 4 cut(s) 210, 371, 540, 710
MaeIII GTNAC 3 cut(s) 10, 31, 373
MalI GATC 1 cut(s) 891
MboI GATC 1 cut(s) 889
MboII GAAGA 4 cut(s) 410, 587, 645, 815
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 889
MluCI AATT 5 cut(s) 27, 282, 483, 727, 739
MlyI GAGTC 2 cut(s) 164, 467
MmeI TCCRAC 1 cut(s) 867
MroNI GCCGGC 1 cut(s) 785
MseI TTAA 3 cut(s) 392, 489, 515
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 2 cut(s) 753, 817
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 753, 817
MwoI GCNNNNNNNGC 8 cut(s) 206, 215, 224, 317, 326, 335, 692, 858
NaeI GCCGGC 1 cut(s) 787
NcoI CCATGG 1 cut(s) 339
NdeII GATC 1 cut(s) 889
NgoMIV GCCGGC 1 cut(s) 785
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 3 cut(s) 337, 814, 862
NmuCI GTSAC 1 cut(s) 373
PctI GAATGC 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 787
PfeI GAWTC 1 cut(s) 706
PkrI GCNGC 3 cut(s) 322, 685, 840
PleI GAGTC 2 cut(s) 163, 467
PpsI GAGTC 2 cut(s) 163, 467
Psp6I CCWGG 2 cut(s) 751, 815
PspGI CCWGG 2 cut(s) 751, 815
PspN4I GGNNCC 3 cut(s) 337, 814, 862
PspPI GGNCC 1 cut(s) 851
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 594, 722
RsaNI GTAC 2 cut(s) 593, 721
SaqAI TTAA 3 cut(s) 392, 489, 515
SatI GCNGC 3 cut(s) 321, 684, 839
Sau3AI GATC 1 cut(s) 889
Sau96I GGNCC 1 cut(s) 851
SchI GAGTC 2 cut(s) 164, 467
ScrFI CCNGG 2 cut(s) 753, 817
SetI ASST 9 cut(s) 23, 139, 202, 322, 442, 570, 594, 606, 811
SfaNI GCATC 2 cut(s) 298, 547
SfcI CTRYAG 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 5 cut(s) 27, 282, 483, 727, 739
SspMI CTAG 4 cut(s) 210, 371, 540, 710
StyD4I CCNGG 2 cut(s) 751, 815
StyI CCWWGG 2 cut(s) 222, 339
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 801
TasI AATT 5 cut(s) 27, 282, 483, 727, 739
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 3 cut(s) 392, 489, 515
Tru9I TTAA 3 cut(s) 392, 489, 515
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 320, 683, 838
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 173, 223, 788, 894
TspRI CASTG 1 cut(s) 693
XapI RAATTY 1 cut(s) 282
XspI CTAG 4 cut(s) 210, 371, 540, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.