Prupe.2G161900_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21290664 .. 21292480
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G161900.2

Sequence Viewer

Length: 945 bp
ATGCTCATACCGAAATCAGAAAGCAAATCTGGAAACCCATCAACAATGGCAGAAGTAGCAAAGAAGTATGCAGTTGTTACAGGTTCAAATCAAGGGATTGGATTTGGAACAGTTAGAAAGTTGGCTTCAAATGGGATCATGGTGGTGTTAACTGCTTTAGATGAGAAAATGGGTGTTGAAGCTATTGAAAAATTGAAAGAGTGTGGCCTCTCTGACCTGGTGGTTTTTCATCAACTTGATGTAACAGACACTGCTAGCATTGCTTCCCTTGCAGATTTTGTCAAAACCCAATTTGGGAAACTAGATATCTTGGTAAATAATGCAGGGGTTAGTGGAACCATTGTAGACCCTGAATCTATGAGAGCTGCTGCAGCTGCAGGTATTGGTAAGGATGGTGTAGGAGTAAATTGGAGTGAAATAATGACTCAAACGTACGAGTTAGCTGAAGTATGTGTGAAAACAAACTACTATGGTGCCAAGAAAATGACCAAAGCACTCCTTCCTCTCCTCCAGCTATCTGATTCACCAAGAGTTGTCAGTCTTTCTTCCAGCATGGGATCGTTAAAGCATATACCAAATGAATGGGCCAAAGGGATGTTAAGTGATGCTGAGAAACTTACAGAACAGAGAATAGATGATGTTTTGAATGAGTTTCTCAAAGACTTCAAAGAAGATATTCTGGAAACCAAAGGCTGGCCTACTTCCCTCTCTGCCTATATACTCTCAAAAGCAGCCGTGAACGCGTTCACTAGAATGATGGCCAACAAATACCCAAACATCTGCATCAATAGTGTAGACCCTGGATTTGTCAAAACAGATATGAACTTCAATACTGGCATGTTAACCATTGATGAAGGTGCTGAGAGTGTTGTGAGGTTAGCTATGGTTCCAAATGGCAGCCCTTCTGGCCTCTACTTCTATTTACAACAAGTCTCACCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

315

Amino Acids

33.86

Weight (kDa)

5.27

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 473
AccB7I CCANNNNNTGG 1 cut(s) 693
AccI GTMKAC 2 cut(s) 345, 795
AccII CGCG 1 cut(s) 743
AclWI GGATC 2 cut(s) 143, 565
AcoI YGGCCR 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 294, 693
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 8 cut(s) 87, 129, 179, 188, 196, 646, 667, 829
AjnI CCWGG 2 cut(s) 216, 799
AluBI AGCT 6 cut(s) 182, 365, 374, 443, 514, 881
AluI AGCT 6 cut(s) 182, 365, 374, 443, 514, 881
Alw26I GTCTC 1 cut(s) 937
AlwI GGATC 2 cut(s) 143, 565
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 5 cut(s) 205, 585, 695, 759, 907
ApeKI GCWGC 6 cut(s) 365, 368, 371, 374, 731, 897
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
Asp700I GAANNNNTTC 2 cut(s) 675, 743
AspS9I GGNCC 1 cut(s) 585
AsuHPI GGTGA 2 cut(s) 516, 927
AsuNHI GCTAGC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 473
BbvI GCAGC 6 cut(s) 352, 355, 361, 383, 743, 909
BccI CCATC 3 cut(s) 46, 386, 751
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 2 cut(s) 218, 801
BcoDI GTCTC 1 cut(s) 937
BfaI CTAG 3 cut(s) 255, 302, 750
BfmI CTRYAG 2 cut(s) 369, 375
BfuAI ACCTGC 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 906
BisI GCNGC 6 cut(s) 366, 369, 372, 375, 732, 898
BlsI GCNGC 6 cut(s) 367, 370, 373, 376, 733, 899
Bme1390I CCNGG 2 cut(s) 218, 801
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 3 cut(s) 337, 475, 888
BmrFI CCNGG 2 cut(s) 218, 801
BmsI GCATC 2 cut(s) 595, 792
BmtI GCTAGC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 799
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 693
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 218, 801
BseDI CCNNGG 1 cut(s) 799
BseGI GGATG 2 cut(s) 397, 600
BseLI CCNNNNNNNGG 2 cut(s) 294, 693
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 600, 852
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 6 cut(s) 352, 355, 361, 383, 743, 909
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 5 cut(s) 207, 587, 697, 761, 909
BshNI GGYRCC 1 cut(s) 473
BsiWI CGTACG 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 294, 693
BsmAI GTCTC 1 cut(s) 937
BsnI GGCC 5 cut(s) 207, 587, 697, 761, 909
Bsp143I GATC 2 cut(s) 135, 557
BspANI GGCC 5 cut(s) 207, 587, 697, 761, 909
BspCNI CTCAG 2 cut(s) 601, 853
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 3 cut(s) 337, 475, 888
BspMAI CTGCAG 2 cut(s) 373, 379
BspMI ACCTGC 1 cut(s) 368
BspOI GCTAGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 143, 565
BspT107I GGYRCC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 1 cut(s) 799
BssMI GATC 2 cut(s) 135, 557
Bst2UI CCWGG 2 cut(s) 218, 801
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 256, 695
BstDEI CTNAG 2 cut(s) 609, 861
BstF5I GGATG 2 cut(s) 397, 600
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 2 cut(s) 138, 560
BstMAI GTCTC 1 cut(s) 937
BstMBI GATC 2 cut(s) 135, 557
BstMWI GCNNNNNNNGC 7 cut(s) 56, 260, 269, 371, 374, 740, 906
BstNI CCWGG 2 cut(s) 218, 801
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 2 cut(s) 216, 799
BstSFI CTRYAG 2 cut(s) 369, 375
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 6 cut(s) 352, 355, 361, 383, 743, 909
BstXI CCANNNNNNTGG 1 cut(s) 582
BsuRI GGCC 5 cut(s) 207, 587, 697, 761, 909
BtsCI GGATG 2 cut(s) 397, 600
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 256, 695
CaiI CAGNNNCTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 585
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 433
CviAII CATG 3 cut(s) 139, 553, 838
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 609, 861
DpnI GATC 2 cut(s) 137, 559
DpnII GATC 2 cut(s) 135, 557
EaeI YGGCCR 1 cut(s) 759
Eco32I GATATC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 216, 799
EcoRV GATATC 1 cut(s) 307
FaeI CATG 3 cut(s) 142, 556, 841
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 3 cut(s) 138, 552, 837
FblI GTMKAC 2 cut(s) 345, 795
Fnu4HI GCNGC 6 cut(s) 366, 369, 372, 375, 732, 898
FokI GGATG 2 cut(s) 404, 607
Fsp4HI GCNGC 6 cut(s) 366, 369, 372, 375, 732, 898
FspBI CTAG 3 cut(s) 255, 302, 750
GluI GCNGC 6 cut(s) 366, 369, 372, 375, 732, 898
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 5 cut(s) 207, 587, 697, 761, 909
Hin1II CATG 3 cut(s) 142, 556, 841
HincII GTYRAC 2 cut(s) 150, 843
HindII GTYRAC 2 cut(s) 150, 843
HinfI GANTC 3 cut(s) 353, 424, 521
HpaI GTTAAC 2 cut(s) 150, 843
HphI GGTGA 2 cut(s) 516, 927
Hpy166II GTNNAC 6 cut(s) 150, 346, 739, 747, 796, 843
Hpy188I TCNGA 4 cut(s) 19, 214, 520, 944
Hpy188III TCNNGA 2 cut(s) 30, 680
Hpy8I GTNNAC 6 cut(s) 150, 346, 739, 747, 796, 843
HpyAV CCTTC 3 cut(s) 509, 848, 912
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 6 cut(s) 71, 272, 323, 371, 377, 783
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 260, 269, 371, 374, 740, 906
HpyF3I CTNAG 2 cut(s) 609, 861
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 142, 556, 841
KspAI GTTAAC 2 cut(s) 150, 843
Kzo9I GATC 2 cut(s) 135, 557
Lsp1109I GCAGC 6 cut(s) 352, 355, 361, 383, 743, 909
LweI GCATC 2 cut(s) 595, 792
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 3 cut(s) 255, 302, 750
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 2 cut(s) 76, 241
MalI GATC 2 cut(s) 137, 559
MboI GATC 2 cut(s) 135, 557
MboII GAAGA 2 cut(s) 537, 683
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 3 cut(s) 191, 290, 406
MluI ACGCGT 1 cut(s) 741
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 6 cut(s) 218, 513, 518, 716, 867, 920
Mox20I TGGCCA 1 cut(s) 761
MroXI GAANNNNTTC 2 cut(s) 675, 743
MscI TGGCCA 1 cut(s) 761
MseI TTAA 4 cut(s) 149, 563, 599, 842
MslI CAYNNNNRTG 2 cut(s) 143, 752
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 218, 801
MvaI CCWGG 2 cut(s) 218, 801
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 7 cut(s) 56, 260, 269, 371, 374, 740, 906
NdeII GATC 2 cut(s) 135, 557
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 3 cut(s) 142, 556, 841
NlaIV GGNNCC 3 cut(s) 337, 475, 888
NspI RCATGY 1 cut(s) 841
PdmI GAANNNNTTC 2 cut(s) 675, 743
PfeI GAWTC 2 cut(s) 353, 521
Pfl23II CGTACG 1 cut(s) 432
PflMI CCANNNNNTGG 1 cut(s) 693
PkrI GCNGC 6 cut(s) 367, 370, 373, 376, 733, 899
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 216, 799
PspGI CCWGG 2 cut(s) 216, 799
PspLI CGTACG 1 cut(s) 432
PspN4I GGNNCC 3 cut(s) 337, 475, 888
PspPI GGNCC 1 cut(s) 585
PstI CTGCAG 2 cut(s) 373, 379
PstNI CAGNNNCTG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 143, 752
SaqAI TTAA 4 cut(s) 149, 563, 599, 842
SatI GCNGC 6 cut(s) 366, 369, 372, 375, 732, 898
Sau3AI GATC 2 cut(s) 135, 557
Sau96I GGNCC 1 cut(s) 585
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 218, 801
SexAI ACCWGGT 1 cut(s) 216
SfaNI GCATC 2 cut(s) 595, 792
SfcI CTRYAG 2 cut(s) 369, 375
SmiMI CAYNNNNRTG 2 cut(s) 143, 752
Sse9I AATT 3 cut(s) 191, 290, 406
SspMI CTAG 3 cut(s) 255, 302, 750
StyD4I CCNGG 2 cut(s) 216, 799
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 434
TasI AATT 3 cut(s) 191, 290, 406
TfiI GAWTC 2 cut(s) 353, 521
Tru1I TTAA 4 cut(s) 149, 563, 599, 842
Tru9I TTAA 4 cut(s) 149, 563, 599, 842
TscAI CASTG 1 cut(s) 256
TseI GCWGC 6 cut(s) 365, 368, 371, 374, 731, 897
TspDTI ATGAA 4 cut(s) 218, 594, 836, 867
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 693
XceI RCATGY 1 cut(s) 841
XmiI GTMKAC 2 cut(s) 345, 795
XmnI GAANNNNTTC 2 cut(s) 675, 743
XspI CTAG 3 cut(s) 255, 302, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.