Prupe.2G161600_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21283393 .. 21285749
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G161600.1

Sequence Viewer

Length: 894 bp
ATGGCCGAAGCAACAAAGAGATATGCAGTTGTTACAGGGGCAAACAAAGGGATTGGGTTAGAAACTGTCAGGCAGTTGGCCTCAAATGGAATCACTGTAGTCTTAACTGCTAGAGATGAAAAGAGGGGTCTTGAAGCTTTTGATAAACTCAAAGAGTCTGGCCTTACAGGTCAAGTGGTTTTTCATCAACTTGATGTGGCGGACCCCGCAAGCGTTGCTTCTTTGGCAGATTTCATCAAAACCCAGCTTGGGAAACTCGATATCTTGGTGAACAATGCAGGGATTGGTGGAGTCGGACTAGATTCTGATGCTTTTAAAGCTTCAGAAAATTCTGGTAGTGGGGAAGGAGCAAACATTGATTGGACTAAATTTCTGACTGAAACATACCCGTTAACAGAAGAATGCTTGCAAATAAATTACTATGGTACTAAAAGAACAGCTGAAGCACTTATCCCACTCCTCCAGTTATCCGATTCACCAAGAATTGTTAACGTTTCTTCCTCCGCGGGGAAGTTAGAGAACATACCAAGTGATTGGGTTAAAGGCGTTTTTAGTGATTCCGAGTACCTAACAGAAGATAGAGTAGATGAGGTATTGACACAGCTACTAAAAGACTTCAAGGAGGGTTCAATTGAAAGCAAGGGCTGGCCTGTTTATCCTGCTTATAGAGTCTCAAAAGCAGCAATAAATGCATATACAAGGATTCTAGCCAAGAAATACCCCAACTTCCGCATCAATTCTGTCTGCCCCGGCTATGTCAAGACAGATATAACCTTCAATACCGGCATCTTGTCTGTTGAAGAAGGCGCTGCAAGTGTTCTGAAGTTAGCATTGCTGCCCAGTGATGGTCCTTCTGGCCTCTTCTTTGTTCGGTCTGAAGTATCATGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.0

Weight (kDa)

5.09

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 506
AciI CCGC 5 cut(s) 200, 207, 504, 506, 730
AclI AACGTT 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 328, 368
AcuI CTGAAG 3 cut(s) 306, 462, 842
AfaI GTAC 2 cut(s) 427, 566
AfiI CCNNNNNNNGG 3 cut(s) 249, 507, 845
AgsI TTSAA 6 cut(s) 134, 619, 630, 635, 778, 800
AluBI AGCT 5 cut(s) 137, 247, 320, 440, 604
AluI AGCT 5 cut(s) 137, 247, 320, 440, 604
Alw26I GTCTC 1 cut(s) 676
AoxI GGCC 5 cut(s) 3, 78, 160, 647, 856
ApeKI GCWGC 3 cut(s) 680, 809, 835
ApoI RAATTY 2 cut(s) 328, 368
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 2 cut(s) 202, 848
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 280, 468
AvaII GGWCC 2 cut(s) 202, 848
BbvI GCAGC 3 cut(s) 692, 796, 822
BccI CCATC 1 cut(s) 839
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 3 cut(s) 111, 299, 707
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 810
BisI GCNGC 3 cut(s) 681, 810, 836
BlsI GCNGC 3 cut(s) 682, 811, 837
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 2 cut(s) 202, 848
BmgT120I GGNCC 2 cut(s) 202, 848
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 750
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 298, 741, 795
BmuI ACTGGG 1 cut(s) 834
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 750
BsaJI CCNNGG 2 cut(s) 504, 748
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 507, 845
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 2 cut(s) 463, 840
Bse3DI GCAATG 1 cut(s) 830
BseDI CCNNGG 2 cut(s) 504, 748
BseLI CCNNNNNNNGG 3 cut(s) 249, 507, 845
BseMI GCAATG 1 cut(s) 830
BseNI ACTGG 2 cut(s) 463, 840
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 3 cut(s) 692, 796, 822
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 5 cut(s) 5, 80, 162, 649, 858
BsiSI CCGG 2 cut(s) 750, 783
BslI CCNNNNNNNGG 3 cut(s) 249, 507, 845
BsmAI GTCTC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 5 cut(s) 5, 80, 162, 649, 858
BspACI CCGC 5 cut(s) 200, 207, 504, 506, 730
BspANI GGCC 5 cut(s) 5, 80, 162, 649, 858
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 2 cut(s) 463, 840
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 2 cut(s) 504, 748
Bst4CI ACNGT 2 cut(s) 67, 97
Bst6I CTCTTC 1 cut(s) 866
BstAPI GCANNNNNTGC 2 cut(s) 215, 689
BstC8I GCNNGC 3 cut(s) 211, 407, 647
BstDSI CCRYGG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 1 cut(s) 809
BstMAI GTCTC 1 cut(s) 676
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 317, 689
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 3 cut(s) 692, 796, 822
BstXI CCANNNNNNTGG 1 cut(s) 534
BsuRI GGCC 5 cut(s) 5, 80, 162, 649, 858
BtgI CCRYGG 1 cut(s) 504
BtsIMutI CAGTG 2 cut(s) 93, 847
Cac8I GCNNGC 3 cut(s) 211, 407, 647
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 202, 848
Cfr42I CCGCGG 1 cut(s) 507
Csp6I GTAC 2 cut(s) 426, 565
CviAII CATG 2 cut(s) 885, 891
CviQI GTAC 2 cut(s) 426, 565
DraI TTTAAA 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 866
EciI GGCGGA 1 cut(s) 215
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 202, 848
Eco57I CTGAAG 3 cut(s) 306, 462, 842
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 2 cut(s) 888, 894
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FatI CATG 2 cut(s) 884, 890
FauI CCCGC 2 cut(s) 214, 499
Fnu4HI GCNGC 3 cut(s) 681, 810, 836
Fsp4HI GCNGC 3 cut(s) 681, 810, 836
FspBI CTAG 3 cut(s) 111, 299, 707
GlaI GCGC 1 cut(s) 808
GluI GCNGC 3 cut(s) 681, 810, 836
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 810
HaeIII GGCC 5 cut(s) 5, 80, 162, 649, 858
HapII CCGG 2 cut(s) 750, 783
HhaI GCGC 1 cut(s) 809
Hin1II CATG 2 cut(s) 888, 894
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 2 cut(s) 393, 490
HindII GTYRAC 2 cut(s) 393, 490
HindIII AAGCTT 2 cut(s) 135, 318
HinfI GANTC 8 cut(s) 90, 155, 291, 302, 473, 557, 669, 703
HpaI GTTAAC 2 cut(s) 393, 490
HpaII CCGG 2 cut(s) 750, 783
HphI GGTGA 2 cut(s) 280, 468
Hpy166II GTNNAC 3 cut(s) 271, 393, 490
Hpy188I TCNGA 8 cut(s) 296, 307, 325, 375, 472, 562, 822, 877
Hpy188III TCNNGA 2 cut(s) 131, 760
Hpy8I GTNNAC 3 cut(s) 271, 393, 490
HpyAV CCTTC 4 cut(s) 338, 784, 797, 861
HpyCH4III ACNGT 2 cut(s) 67, 97
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 6 cut(s) 26, 278, 409, 692, 812, 890
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 317, 689
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 2 cut(s) 888, 894
HspAI GCGC 1 cut(s) 807
KspAI GTTAAC 2 cut(s) 393, 490
KspI CCGCGG 1 cut(s) 507
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 3 cut(s) 692, 796, 822
LweI GCATC 3 cut(s) 298, 741, 795
MaeI CTAG 3 cut(s) 111, 299, 707
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 5 cut(s) 410, 489, 587, 812, 853
MfeI CAATTG 1 cut(s) 630
MluCI AATT 6 cut(s) 328, 368, 415, 483, 630, 736
MlyI GAGTC 3 cut(s) 164, 300, 678
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 7 cut(s) 91, 117, 470, 511, 583, 616, 869
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 5 cut(s) 104, 315, 392, 489, 540
MslI CAYNNNNRTG 1 cut(s) 889
MspA1I CMGCKG 2 cut(s) 440, 506
MspI CCGG 2 cut(s) 750, 783
MspR9I CCNGG 1 cut(s) 750
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 407
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 317, 689
NciI CCSGG 1 cut(s) 750
NlaIII CATG 2 cut(s) 888, 894
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 694
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 5 cut(s) 90, 302, 473, 557, 703
PkrI GCNGC 3 cut(s) 682, 811, 837
PleI GAGTC 3 cut(s) 163, 299, 677
PpsI GAGTC 3 cut(s) 163, 299, 677
Psp1406I AACGTT 1 cut(s) 492
PspFI CCCAGC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 202, 848
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 427, 566
RsaNI GTAC 2 cut(s) 426, 565
RseI CAYNNNNRTG 1 cut(s) 889
SacII CCGCGG 1 cut(s) 507
SaqAI TTAA 5 cut(s) 104, 315, 392, 489, 540
SatI GCNGC 3 cut(s) 681, 810, 836
Sau96I GGNCC 2 cut(s) 202, 848
SchI GAGTC 3 cut(s) 164, 300, 678
ScrFI CCNGG 1 cut(s) 750
SfaNI GCATC 3 cut(s) 298, 741, 795
SfcI CTRYAG 1 cut(s) 96
Sfr303I CCGCGG 1 cut(s) 507
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 2 cut(s) 202, 848
SmiMI CAYNNNNRTG 1 cut(s) 889
Sse9I AATT 6 cut(s) 328, 368, 415, 483, 630, 736
SsiI CCGC 5 cut(s) 200, 207, 504, 506, 730
SspMI CTAG 3 cut(s) 111, 299, 707
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 2 cut(s) 67, 97
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 861
TasI AATT 6 cut(s) 328, 368, 415, 483, 630, 736
TfiI GAWTC 5 cut(s) 90, 302, 473, 557, 703
Tru1I TTAA 5 cut(s) 104, 315, 392, 489, 540
Tru9I TTAA 5 cut(s) 104, 315, 392, 489, 540
TscAI CASTG 2 cut(s) 100, 847
TseI GCWGC 3 cut(s) 680, 809, 835
TspDTI ATGAA 3 cut(s) 132, 173, 223
TspRI CASTG 2 cut(s) 100, 847
VpaK11BI GGWCC 2 cut(s) 202, 848
XapI RAATTY 2 cut(s) 328, 368
XspI CTAG 3 cut(s) 111, 299, 707
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.