Rmu_co8330951.1_g000001

( )-neomenthol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8330951.1
OG0000170
Physical Location & Seq
Reverse (-)
1 .. 895
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8330951.1_g000001.1.cds

Sequence Viewer

Length: 374 bp
atggggcagttaaagaacataccaagtgatcgagtgaaaggagttcttagtactgatgtcgagaacctaagcgaagagagtgtagatgaaatattgacagggtttctaaacgacctcaaggagagtttacttgaaagcaagggttggccttctgtgatgtcaggctatatactctcaaaagcagcaatgaatgcatatacaaggattctagccaagaagtaccccggttttcgtgtcaattctgtatgccctggctatgtcaaaacagatataaacttcaatggcggcgtcattcctgttgaagaaggtgctgcaagtgttgtaaatttagcattgctgcctaatgatggccacacaggccagttcttttttcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

125

Amino Acids

13.6

Weight (kDa)

5.34

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 52, 221
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 134, 280, 302
AjnI CCWGG 1 cut(s) 250
AoxI GGCC 3 cut(s) 146, 349, 358
ApeKI GCWGC 3 cut(s) 182, 311, 337
ApoI RAATTY 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 225
BalI TGGCCA 1 cut(s) 351
BbvI GCAGC 3 cut(s) 194, 298, 324
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 225
BfaI CTAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 4 cut(s) 183, 286, 312, 338
BlsI GCNGC 4 cut(s) 184, 287, 313, 339
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 225, 252
BmrFI CCNGG 2 cut(s) 225, 252
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 223, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 2 cut(s) 192, 332
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 223, 250
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 192, 332
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 194, 298, 324
BshFI GGCC 3 cut(s) 148, 351, 360
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 347
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 3 cut(s) 148, 351, 360
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 285
BspANI GGCC 3 cut(s) 148, 351, 360
BsrDI GCAATG 2 cut(s) 192, 332
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 223, 250
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 47, 68
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 191, 357
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 223, 250
BstV1I GCAGC 3 cut(s) 194, 298, 324
BsuRI GGCC 3 cut(s) 148, 351, 360
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 51, 220
CviJI RGCY 6 cut(s) 148, 165, 212, 255, 351, 360
CviKI_1 RGCY 6 cut(s) 148, 165, 212, 255, 351, 360
CviQI GTAC 2 cut(s) 51, 220
DdeI CTNAG 2 cut(s) 47, 68
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 196
FaiI YATR 8 cut(s) 20, 168, 170, 196, 198, 247, 258, 272
FalI AAGNNNNNCTT 2 cut(s) 30, 62
Fnu4HI GCNGC 4 cut(s) 183, 286, 312, 338
Fsp4HI GCNGC 4 cut(s) 183, 286, 312, 338
FspBI CTAG 1 cut(s) 209
GluI GCNGC 4 cut(s) 183, 286, 312, 338
HaeIII GGCC 3 cut(s) 148, 351, 360
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 288
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 159, 299
HpyCH4V TGCA 2 cut(s) 194, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 357
HpyF3I CTNAG 2 cut(s) 47, 68
Hsp92I GRCGYC 1 cut(s) 288
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 7 cut(s) 84, 147, 237, 238, 264, 309, 342
Lsp1109I GCAGC 3 cut(s) 194, 298, 324
MaeI CTAG 1 cut(s) 209
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 86, 314
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 2 cut(s) 238, 325
MluNI TGGCCA 1 cut(s) 351
MnlI CCTC 1 cut(s) 125
Mox20I TGGCCA 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 196
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 351
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 225, 252
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 191, 357
NciI CCSGG 1 cut(s) 225
NdeII GATC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 196
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 184, 287, 313, 339
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
RsaI GTAC 2 cut(s) 52, 221
RsaNI GTAC 2 cut(s) 51, 220
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 4 cut(s) 183, 286, 312, 338
Sau3AI GATC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 225, 252
SetI ASST 3 cut(s) 69, 117, 310
SfiI GGCCNNNNNGGCC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 238, 325
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 223, 250
TaqI TCGA 2 cut(s) 31, 60
TasI AATT 2 cut(s) 238, 325
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 3 cut(s) 182, 311, 337
TspDTI ATGAA 2 cut(s) 102, 203
XapI RAATTY 1 cut(s) 325
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.