Rorug01G0235700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
34030396 .. 34030749
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0235700.1

Sequence Viewer

Length: 354 bp
ATGGCCAGTTCTGCGTTTGAGTTGGAGGATCAGACGGATGAGGATTTCTTTGACAAATTGATCGATGATAATGACATTGATTTTTTTGGGTATGCTAATAGTTCTGTAGGAAAAGTTGAGCTTGATGTGGTTAAAGATGTTTCAAAATTGAGTATTTCGGATGTAGGTGCCGGTGGGAAAACTTGTTCTCAGGTTAATGATGAGTTGGGTCAGAAGGATGGGGTTGTGTTGGAGCCGTCGGATCTGCAGAAGCTGTCTTTGACTGGTAGAGAGAGTGAGTCTAGTGCATTGGTGGCCAAAGGGGAGGAATGTGTGGTGGATGATACAGTGAGTACTGTGTGTTGTATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.45

Weight (kDa)

4.05

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AclWI GGATC 2 cut(s) 36, 249
AcoI YGGCCR 2 cut(s) 3, 294
AfaI GTAC 1 cut(s) 334
AgsI TTSAA 1 cut(s) 144
AloI GAACNNNNNNTCC 2 cut(s) 169, 201
AluBI AGCT 2 cut(s) 121, 253
AluI AGCT 2 cut(s) 121, 253
AlwI GGATC 2 cut(s) 36, 249
AlwNI CAGNNNCTG 1 cut(s) 253
AoxI GGCC 2 cut(s) 3, 294
BalI TGGCCA 2 cut(s) 5, 296
BanI GGYRCC 1 cut(s) 167
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 105, 245
BmcAI AGTACT 1 cut(s) 334
BmiI GGNNCC 2 cut(s) 169, 234
Bsa29I ATCGAT 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 6, 268
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 4 cut(s) 43, 166, 223, 325
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 6, 268
BshFI GGCC 2 cut(s) 5, 296
BshNI GGYRCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 63
BsiSI CCGG 1 cut(s) 171
BsnI GGCC 2 cut(s) 5, 296
Bsp143I GATC 3 cut(s) 28, 60, 241
BspANI GGCC 2 cut(s) 5, 296
BspCNI CTCAG 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 169, 234
BspMAI CTGCAG 1 cut(s) 249
BspPI GGATC 2 cut(s) 36, 249
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 6, 268
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 3 cut(s) 28, 60, 241
Bst4CI ACNGT 2 cut(s) 328, 337
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 4 cut(s) 43, 166, 223, 325
BstKTI GATC 3 cut(s) 31, 63, 244
BstMBI GATC 3 cut(s) 28, 60, 241
BstMWI GCNNNNNNNGC 2 cut(s) 11, 293
BstSFI CTRYAG 2 cut(s) 105, 245
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 5, 296
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 4 cut(s) 43, 166, 223, 325
BtsIMutI CAGTG 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 1 cut(s) 333
CviJI RGCY 5 cut(s) 5, 121, 235, 253, 296
CviKI_1 RGCY 5 cut(s) 5, 121, 235, 253, 296
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 30, 62, 243
DpnII GATC 3 cut(s) 28, 60, 241
EaeI YGGCCR 2 cut(s) 3, 294
FaiI YATR 1 cut(s) 93
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FokI GGATG 4 cut(s) 50, 173, 230, 332
FspBI CTAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 5, 296
HapII CCGG 1 cut(s) 171
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 4 cut(s) 33, 160, 213, 241
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 328, 337
HpyCH4V TGCA 2 cut(s) 247, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 293
HpyF3I CTNAG 1 cut(s) 189
Kzo9I GATC 3 cut(s) 28, 60, 241
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 19, 176, 184, 249
MaeI CTAG 1 cut(s) 282
MalI GATC 3 cut(s) 30, 62, 243
MboI GATC 3 cut(s) 28, 60, 241
MflI RGATCY 1 cut(s) 241
MlsI TGGCCA 2 cut(s) 5, 296
MluCI AATT 2 cut(s) 56, 146
MluNI TGGCCA 2 cut(s) 5, 296
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 210, 219
MnlI CCTC 3 cut(s) 19, 34, 298
Mox20I TGGCCA 2 cut(s) 5, 296
MscI TGGCCA 2 cut(s) 5, 296
MseI TTAA 2 cut(s) 132, 195
Msp20I TGGCCA 2 cut(s) 5, 296
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 11, 293
NdeII GATC 3 cut(s) 28, 60, 241
NlaIV GGNNCC 2 cut(s) 169, 234
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 169, 234
PstI CTGCAG 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 132, 195
Sau3AI GATC 3 cut(s) 28, 60, 241
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 1 cut(s) 287
SetI ASST 4 cut(s) 123, 169, 195, 255
SfcI CTRYAG 2 cut(s) 105, 245
SgeI CNNG 7 cut(s) 18, 134, 183, 195, 203, 276, 294
Sse9I AATT 2 cut(s) 56, 146
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 328, 337
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 56, 146
TatI WGTACW 1 cut(s) 332
Tru1I TTAA 2 cut(s) 132, 195
Tru9I TTAA 2 cut(s) 132, 195
TscAI CASTG 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 333
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.