RchiOBHm_Chr1g0353661

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000170
Physical Location & Seq
Forward (+)
46863576 .. 46865773
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57928

Sequence Viewer

Length: 903 bp
ATGGAAGAATCAAGAAAGAGGTACGCGGTTGTTACAGGTTCAAATCAGGGGATTGAATTTGGAACAGTTAAGCAGTTGGCCTCAAATGGGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCGGTTGAAGAATTAAAAGACTCCGGCCTCTCTGACCTTGTTGTTTATCATCAGCTTGATGTAACAGACCCTGCTAGCATTGCTTCCCTTGCAGATTTTGCCAAAACCCAATTTGGGAAACTAGATATCTTGGTTAACAATGCAGGTGTTAGTGGAACCATTACAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTATGGCTAAGGATGGTGGAGGAGTCAATTGGAGTGAACTAATGACCCAAACATACGATCTAGCTGAAGTATGTGTGGAAACAAACTACTATGGTGCAAGGAAAGTTACCAAAGCACTCCTTCCTCTCCTCCTTCTATCTGATTCACCAAGAATTGTCAATCTTACTTCTAGCATGGGGACATTAAAGCATATACCAAATGAATGGGCCAAAGTGGTGTTAAGTGATGCCGAAAACGTTACAGAAGAGAAAGTAGAGGAGGTCTTAAGTGAGTTTCTAAAGGACTTCAAAGAAGATATGCTTGAAACCAAAGGTTGGCCTCCTACCCCTTCTGCCTATACACTCTCAAAGGCAGCCTTGAATGCATACACCAGAATTGTGGCCAAGAAGTACCCGAAGATATGCGTCAATTGTGTTGATCCTGGATTTGTTAAAACAGATATGACCTGCAATGCCGGCATCTTATCCATCGATGAGGGTGCTACAAGTGTTGTGAGGTTGGCAATGACTCCAAATGGCAGTCCTTCAGGTCTATACTTCTATGTACAAGAAGTCTCACCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.41

Weight (kDa)

4.81

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 174 9.2e-22 short chain dehydrogenase
adh_short_C2 PF13561 15 - 98 6.7e-14 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 216 - 263 6.9e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 3 cut(s) 269, 326, 791
AccB7I CCANNNNNTGG 1 cut(s) 651
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 26, 137, 333
AclI AACGTT 1 cut(s) 573
AclWI GGATC 3 cut(s) 98, 296, 749
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 423, 846
AfaI GTAC 3 cut(s) 23, 728, 882
AfiI CCNNNNNNNGG 3 cut(s) 87, 249, 651
AflII CTTAAG 1 cut(s) 601
AgsI TTSAA 7 cut(s) 42, 56, 134, 143, 625, 641, 697
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 3 cut(s) 110, 190, 401
AluI AGCT 3 cut(s) 110, 190, 401
Alw26I GTCTC 1 cut(s) 895
AlwI GGATC 3 cut(s) 98, 296, 749
AlwNI CAGNNNCTG 2 cut(s) 206, 305
AoxI GGCC 5 cut(s) 78, 160, 543, 653, 717
ApeKI GCWGC 2 cut(s) 329, 689
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 474, 885
AsuNHI GCTAGC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 719
BbvI GCAGC 2 cut(s) 341, 701
BccI CCATC 2 cut(s) 344, 812
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 1 cut(s) 759
BcoDI GTCTC 1 cut(s) 895
BfaI CTAG 4 cut(s) 210, 257, 398, 507
BfrI CTTAAG 1 cut(s) 601
BfuAI ACCTGC 3 cut(s) 269, 326, 791
BisI GCNGC 3 cut(s) 330, 333, 690
BlsI GCNGC 3 cut(s) 331, 334, 691
Bme1390I CCNGG 1 cut(s) 759
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 553, 804
BmtI GCTAGC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 807
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 249, 651
Bse118I RCCGGY 1 cut(s) 791
Bse3DI GCAATG 3 cut(s) 213, 793, 846
BseBI CCWGG 1 cut(s) 759
BseCI ATCGAT 1 cut(s) 807
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 87, 249, 651
BseMI GCAATG 3 cut(s) 213, 793, 846
BseRI GAGGAG 3 cut(s) 372, 455, 608
BseXI GCAGC 2 cut(s) 341, 701
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 5 cut(s) 80, 162, 545, 655, 719
BshVI ATCGAT 1 cut(s) 807
BsiSI CCGG 2 cut(s) 159, 792
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 3 cut(s) 87, 249, 651
BsmAI GTCTC 1 cut(s) 895
BsmFI GGGAC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 5 cut(s) 80, 162, 545, 655, 719
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 4 cut(s) 90, 301, 394, 754
BspACI CCGC 3 cut(s) 26, 137, 333
BspANI GGCC 5 cut(s) 80, 162, 545, 655, 719
BspDI ATCGAT 1 cut(s) 807
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 292
BspMI ACCTGC 3 cut(s) 269, 326, 791
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 3 cut(s) 98, 296, 749
BspTI CTTAAG 1 cut(s) 601
BsrDI GCAATG 3 cut(s) 213, 793, 846
BsrFI RCCGGY 1 cut(s) 791
BsrGI TGTACA 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 791
BssMI GATC 4 cut(s) 90, 301, 394, 754
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 2 cut(s) 67, 100
Bst6I CTCTTC 1 cut(s) 576
BstAFI CTTAAG 1 cut(s) 601
BstAPI GCANNNNNTGC 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 880
BstC8I GCNNGC 2 cut(s) 211, 793
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 4 cut(s) 93, 304, 397, 757
BstMAI GTCTC 1 cut(s) 895
BstMBI GATC 4 cut(s) 90, 301, 394, 754
BstMWI GCNNNNNNNGC 7 cut(s) 215, 224, 233, 329, 341, 698, 792
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 757
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 341, 701
BstX2I RGATCY 1 cut(s) 301
BstXI CCANNNNNNTGG 2 cut(s) 540, 715
BstYI RGATCY 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 807
BsuRI GGCC 5 cut(s) 80, 162, 545, 655, 719
BsuTUI ATCGAT 1 cut(s) 807
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 3 cut(s) 269, 326, 791
Cac8I GCNNGC 2 cut(s) 211, 793
CaiI CAGNNNCTG 2 cut(s) 206, 305
CciI TCATGA 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 543
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 2 cut(s) 317, 730
Csp6I GTAC 3 cut(s) 22, 727, 881
CviAII CATG 2 cut(s) 94, 511
CviQI GTAC 3 cut(s) 22, 727, 881
DdeI CTNAG 1 cut(s) 345
DpnI GATC 4 cut(s) 92, 303, 396, 756
DpnII GATC 4 cut(s) 90, 301, 394, 754
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 2 cut(s) 423, 846
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 703
FaeI CATG 2 cut(s) 97, 514
FalI AAGNNNNNCTT 6 cut(s) 441, 473, 621, 653, 677, 709
FaqI GGGAC 1 cut(s) 529
FatI CATG 2 cut(s) 93, 510
Fnu4HI GCNGC 3 cut(s) 330, 333, 690
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 330, 333, 690
FspBI CTAG 4 cut(s) 210, 257, 398, 507
GluI GCNGC 3 cut(s) 330, 333, 690
HaeIII GGCC 5 cut(s) 80, 162, 545, 655, 719
HapII CCGG 2 cut(s) 159, 792
HgaI GACGC 2 cut(s) 317, 730
Hin1II CATG 2 cut(s) 97, 514
HincII GTYRAC 2 cut(s) 105, 271
HindII GTYRAC 2 cut(s) 105, 271
HinfI GANTC 5 cut(s) 8, 155, 360, 479, 844
HpaI GTTAAC 2 cut(s) 105, 271
HpaII CCGG 2 cut(s) 159, 792
HphI GGTGA 2 cut(s) 474, 885
Hpy166II GTNNAC 3 cut(s) 105, 271, 374
Hpy188I TCNGA 3 cut(s) 169, 317, 478
Hpy188III TCNNGA 3 cut(s) 12, 94, 305
Hpy8I GTNNAC 3 cut(s) 105, 271, 374
HpyAV CCTTC 5 cut(s) 118, 467, 479, 675, 870
HpyCH4III ACNGT 2 cut(s) 67, 100
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 6 cut(s) 227, 278, 329, 434, 701, 786
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 224, 233, 329, 341, 698, 792
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 2 cut(s) 97, 514
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
KspAI GTTAAC 2 cut(s) 105, 271
Kzo9I GATC 4 cut(s) 90, 301, 394, 754
Lsp1109I GCAGC 2 cut(s) 341, 701
LweI GCATC 2 cut(s) 553, 804
MaeI CTAG 4 cut(s) 210, 257, 398, 507
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 31, 196, 442, 574
MalI GATC 4 cut(s) 92, 303, 396, 756
MboI GATC 4 cut(s) 90, 301, 394, 754
MboII GAAGA 6 cut(s) 17, 133, 155, 593, 641, 745
MfeI CAATTG 2 cut(s) 364, 745
MflI RGATCY 1 cut(s) 301
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 7 cut(s) 56, 146, 245, 364, 489, 711, 745
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 3 cut(s) 149, 369, 838
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 791
MscI TGGCCA 1 cut(s) 719
MseI TTAA 9 cut(s) 69, 104, 149, 270, 521, 557, 602, 768, 901
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 719
MspCI CTTAAG 1 cut(s) 601
MspI CCGG 2 cut(s) 159, 792
MspR9I CCNGG 1 cut(s) 759
MunI CAATTG 2 cut(s) 364, 745
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 7 cut(s) 215, 224, 233, 329, 341, 698, 792
NaeI GCCGGC 1 cut(s) 793
NdeII GATC 4 cut(s) 90, 301, 394, 754
NgoMIV GCCGGC 1 cut(s) 791
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 97, 514
NlaIV GGNNCC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 703
PagI TCATGA 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 269
PctI GAATGC 1 cut(s) 703
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 2 cut(s) 8, 479
PflMI CCANNNNNTGG 1 cut(s) 651
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 3 cut(s) 331, 334, 691
PleI GAGTC 3 cut(s) 149, 368, 838
PpsI GAGTC 3 cut(s) 149, 368, 838
Psp1406I AACGTT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 543
PstNI CAGNNNCTG 2 cut(s) 206, 305
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 3 cut(s) 23, 728, 882
RsaNI GTAC 3 cut(s) 22, 727, 881
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 9 cut(s) 69, 104, 149, 270, 521, 557, 602, 768, 901
SatI GCNGC 3 cut(s) 330, 333, 690
Sau3AI GATC 4 cut(s) 90, 301, 394, 754
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 3 cut(s) 149, 369, 838
ScrFI CCNGG 1 cut(s) 759
SfaNI GCATC 2 cut(s) 553, 804
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
Sse9I AATT 7 cut(s) 56, 146, 245, 364, 489, 711, 745
SsiI CCGC 3 cut(s) 26, 137, 333
SspMI CTAG 4 cut(s) 210, 257, 398, 507
StyD4I CCNGG 1 cut(s) 757
TaaI ACNGT 2 cut(s) 67, 100
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 807
TasI AATT 7 cut(s) 56, 146, 245, 364, 489, 711, 745
TatI WGTACW 1 cut(s) 880
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 2 cut(s) 8, 479
Tru1I TTAA 9 cut(s) 69, 104, 149, 270, 521, 557, 602, 768, 901
Tru9I TTAA 9 cut(s) 69, 104, 149, 270, 521, 557, 602, 768, 901
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 329, 689
TspDTI ATGAA 1 cut(s) 552
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 651
Vha464I CTTAAG 1 cut(s) 601
XapI RAATTY 1 cut(s) 56
XspI CTAG 4 cut(s) 210, 257, 398, 507
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.