Rw1G021710

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
46124560 .. 46127125
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021710.1

Sequence Viewer

Length: 972 bp
ATGGACGAACTGAATCTGTCCAACCTGAACCGTACTAGCTTTAAGGCAGTTATCAATGCCTTAACGACCATCAATTTGGCTGAAATTTTGTACGCGGTTGTTACAGGTTCAAATCAGGGGATTGGATTTGGAACAGTTAAGCAGTTGGCCTCAAATGGGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCGGTTGAAGAATTAAAAGACTCCGGCCTCTCTGACCTTGTTGTTTATCATCAGCTTGATGTAACAGACCCTGCTAGCATTGCTTCCCTTGCAGATTTTGCCAAAACCCAATTTGGGAAACTAGATATCTTGGTTAACAATGCAGGTGTTAGTGGAACCATTACAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTATAGCTAAGGATGGTGGAGGAGTCAATTGGAGTGAACTAATGACCCAAACATACGATCTAGCTGAAGTATGTGTGGAAACAAACTACTATGGTGCAAGGAAAGTTACCAAAGCACTCCTTCCTCTCCTCCTTCTATCTGATTCACCAAGAATTGTCAATCTTACTTCTAGCATGGGGACATTAAAGCATATACCAAATGAATGGGCCAAAGCGGTGTTAAGTGATGCCGAAAACGTTACAGAAGAGAAAGTAGAGGAGGTCTTAAGTGAGTTTCTAAAGGACTTCAAAGAAGATATGCTTGAAACCAAAGGCTGGCCTCCTACCCCTTCTGCCTATACACTCTCAAAGGCAGCCTTGAATGCATACACCAGAATTGTGGCCAAGAAGTACCCGAAGGTATGCGTCAATTGTGTTGATCCTGGATTTGTTAAAACAGATATGACCTGCAATGCCGGCGTCTTATCCATCGATGAGGGTGCTACAAGTGTTGTGAGGTTGGCAATGACTCCAAATGGCAGTCCTTCAGGTCTATACTTCTATGTACAAGAAGTCTCACCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

323

Amino Acids

34.66

Weight (kDa)

4.74

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 32 - 197 2.1e-23 short chain dehydrogenase
adh_short_C2 PF13561 38 - 121 8.2e-16 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 239 - 286 2.6e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 3 cut(s) 338, 395, 860
AccB7I CCANNNNNTGG 1 cut(s) 720
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 95, 206, 402, 620
AclI AACGTT 1 cut(s) 642
AclWI GGATC 3 cut(s) 167, 365, 818
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 492, 915
AcyI GRCGYC 1 cut(s) 864
AfaI GTAC 4 cut(s) 34, 92, 797, 951
AfiI CCNNNNNNNGG 3 cut(s) 156, 318, 720
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 6 cut(s) 111, 203, 212, 694, 710, 766
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 5 cut(s) 39, 179, 259, 413, 470
AluI AGCT 5 cut(s) 39, 179, 259, 413, 470
Alw26I GTCTC 1 cut(s) 964
AlwI GGATC 3 cut(s) 167, 365, 818
AlwNI CAGNNNCTG 2 cut(s) 275, 374
AoxI GGCC 5 cut(s) 147, 229, 612, 722, 786
ApeKI GCWGC 2 cut(s) 398, 758
ApoI RAATTY 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 543, 954
AsuNHI GCTAGC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 788
BbvI GCAGC 2 cut(s) 410, 770
BccI CCATC 3 cut(s) 77, 413, 881
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 964
BfaI CTAG 5 cut(s) 36, 279, 326, 467, 576
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 3 cut(s) 338, 395, 860
BisI GCNGC 3 cut(s) 399, 402, 759
BlsI GCNGC 3 cut(s) 400, 403, 760
Bme1390I CCNGG 1 cut(s) 828
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 622
BmtI GCTAGC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 876
BsaHI GRCGYC 1 cut(s) 864
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 318, 720
Bse118I RCCGGY 1 cut(s) 860
Bse3DI GCAATG 3 cut(s) 282, 862, 915
BseBI CCWGG 1 cut(s) 828
BseCI ATCGAT 1 cut(s) 876
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 3 cut(s) 156, 318, 720
BseMI GCAATG 3 cut(s) 282, 862, 915
BseRI GAGGAG 3 cut(s) 441, 524, 677
BseXI GCAGC 2 cut(s) 410, 770
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 149, 231, 614, 724, 788
BshVI ATCGAT 1 cut(s) 876
BsiSI CCGG 2 cut(s) 228, 861
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 3 cut(s) 156, 318, 720
BsmAI GTCTC 1 cut(s) 964
BsmFI GGGAC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 5 cut(s) 149, 231, 614, 724, 788
Bsp1407I TGTACA 1 cut(s) 949
Bsp143I GATC 4 cut(s) 159, 370, 463, 823
BspACI CCGC 4 cut(s) 95, 206, 402, 620
BspANI GGCC 5 cut(s) 149, 231, 614, 724, 788
BspDI ATCGAT 1 cut(s) 876
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 3 cut(s) 338, 395, 860
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 3 cut(s) 167, 365, 818
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 3 cut(s) 282, 862, 915
BsrFI RCCGGY 1 cut(s) 860
BsrGI TGTACA 1 cut(s) 949
BssAI RCCGGY 1 cut(s) 860
BssMI GATC 4 cut(s) 159, 370, 463, 823
BssNI GRCGYC 1 cut(s) 864
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 32, 136, 169
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 864
BstAFI CTTAAG 1 cut(s) 670
BstAPI GCANNNNNTGC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 949
BstC8I GCNNGC 3 cut(s) 280, 722, 862
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 4 cut(s) 162, 373, 466, 826
BstMAI GTCTC 1 cut(s) 964
BstMBI GATC 4 cut(s) 159, 370, 463, 823
BstMWI GCNNNNNNNGC 7 cut(s) 284, 293, 302, 398, 410, 767, 861
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 410, 770
BstX2I RGATCY 1 cut(s) 370
BstXI CCANNNNNNTGG 3 cut(s) 76, 609, 784
BstYI RGATCY 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 876
BsuRI GGCC 5 cut(s) 149, 231, 614, 724, 788
BsuTUI ATCGAT 1 cut(s) 876
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 3 cut(s) 338, 395, 860
Cac8I GCNNGC 3 cut(s) 280, 722, 862
CaiI CAGNNNCTG 2 cut(s) 275, 374
CciI TCATGA 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 612
ClaI ATCGAT 1 cut(s) 876
CseI GACGC 3 cut(s) 386, 799, 853
Csp6I GTAC 4 cut(s) 33, 91, 796, 950
CviAII CATG 2 cut(s) 163, 580
CviQI GTAC 4 cut(s) 33, 91, 796, 950
DdeI CTNAG 1 cut(s) 414
DpnI GATC 4 cut(s) 161, 372, 465, 825
DpnII GATC 4 cut(s) 159, 370, 463, 823
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco32I GATATC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 492, 915
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 2 cut(s) 166, 583
FalI AAGNNNNNCTT 6 cut(s) 510, 542, 690, 722, 746, 778
FaqI GGGAC 1 cut(s) 598
FatI CATG 2 cut(s) 162, 579
Fnu4HI GCNGC 3 cut(s) 399, 402, 759
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 399, 402, 759
FspBI CTAG 5 cut(s) 36, 279, 326, 467, 576
GluI GCNGC 3 cut(s) 399, 402, 759
HaeIII GGCC 5 cut(s) 149, 231, 614, 724, 788
HapII CCGG 2 cut(s) 228, 861
HgaI GACGC 3 cut(s) 386, 799, 853
Hin1I GRCGYC 1 cut(s) 864
Hin1II CATG 2 cut(s) 166, 583
HincII GTYRAC 2 cut(s) 174, 340
HindII GTYRAC 2 cut(s) 174, 340
HinfI GANTC 5 cut(s) 13, 224, 429, 548, 913
HpaI GTTAAC 2 cut(s) 174, 340
HpaII CCGG 2 cut(s) 228, 861
HphI GGTGA 2 cut(s) 543, 954
Hpy166II GTNNAC 3 cut(s) 174, 340, 443
Hpy188I TCNGA 3 cut(s) 238, 386, 547
Hpy188III TCNNGA 2 cut(s) 163, 374
Hpy8I GTNNAC 3 cut(s) 174, 340, 443
HpyAV CCTTC 6 cut(s) 187, 536, 548, 744, 796, 939
HpyCH4III ACNGT 3 cut(s) 32, 136, 169
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 6 cut(s) 296, 347, 398, 503, 770, 855
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 293, 302, 398, 410, 767, 861
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 1 cut(s) 864
Hsp92II CATG 2 cut(s) 166, 583
KroI GCCGGC 1 cut(s) 860
KroNI GCCGGC 1 cut(s) 862
KspAI GTTAAC 2 cut(s) 174, 340
Kzo9I GATC 4 cut(s) 159, 370, 463, 823
Lsp1109I GCAGC 2 cut(s) 410, 770
LweI GCATC 1 cut(s) 622
MaeI CTAG 5 cut(s) 36, 279, 326, 467, 576
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 4 cut(s) 100, 265, 511, 643
MalI GATC 4 cut(s) 161, 372, 465, 825
MboI GATC 4 cut(s) 159, 370, 463, 823
MboII GAAGA 4 cut(s) 202, 224, 662, 710
MfeI CAATTG 2 cut(s) 433, 814
MflI RGATCY 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 8 cut(s) 73, 84, 215, 314, 433, 558, 780, 814
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 3 cut(s) 218, 438, 907
MmeI TCCRAC 1 cut(s) 45
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 860
MscI TGGCCA 1 cut(s) 788
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 788
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 2 cut(s) 228, 861
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 2 cut(s) 433, 814
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 7 cut(s) 284, 293, 302, 398, 410, 767, 861
NaeI GCCGGC 1 cut(s) 862
NdeII GATC 4 cut(s) 159, 370, 463, 823
NgoMIV GCCGGC 1 cut(s) 860
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 166, 583
NlaIV GGNNCC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 772
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 338
PctI GAATGC 1 cut(s) 772
PdiI GCCGGC 1 cut(s) 862
PfeI GAWTC 2 cut(s) 13, 548
PflMI CCANNNNNTGG 1 cut(s) 720
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 3 cut(s) 400, 403, 760
PleI GAGTC 3 cut(s) 218, 437, 907
PpsI GAGTC 3 cut(s) 218, 437, 907
Psp1406I AACGTT 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 612
PstNI CAGNNNCTG 2 cut(s) 275, 374
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 4 cut(s) 34, 92, 797, 951
RsaNI GTAC 4 cut(s) 33, 91, 796, 950
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 3 cut(s) 399, 402, 759
Sau3AI GATC 4 cut(s) 159, 370, 463, 823
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 3 cut(s) 218, 438, 907
ScrFI CCNGG 1 cut(s) 828
SfaNI GCATC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 8 cut(s) 73, 84, 215, 314, 433, 558, 780, 814
SsiI CCGC 4 cut(s) 95, 206, 402, 620
SspMI CTAG 5 cut(s) 36, 279, 326, 467, 576
StyD4I CCNGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 32, 136, 169
TaiI ACGT 1 cut(s) 645
TaqI TCGA 1 cut(s) 876
TasI AATT 8 cut(s) 73, 84, 215, 314, 433, 558, 780, 814
TatI WGTACW 1 cut(s) 949
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 2 cut(s) 13, 548
TscAI CASTG 1 cut(s) 174
TseI GCWGC 2 cut(s) 398, 758
TspDTI ATGAA 1 cut(s) 621
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 720
Vha464I CTTAAG 1 cut(s) 670
XapI RAATTY 1 cut(s) 84
XspI CTAG 5 cut(s) 36, 279, 326, 467, 576
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.