RchiOBHm_Chr1g0353621

( )-neomenthol

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
46815962 .. 46816699
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57925

Sequence Viewer

Length: 546 bp
ATGTACTATAATGTGAAAATTGTGGAAACTTACGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGTTGAAACACTAATTCCACTCCTCCAGCTATCTTATTCACCAAGAATTGTTAATGTTTCATCCTCCAGGGGAAAGTTAAAGAACATACCAAGTGATTGGGTGAGAGGAATTCTTAGTACTAATGTTGAGAACCTGAGCGAAGAGAGTGTAGATGAAATATTGACAGAGTTTCTAAACGACCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTTCATGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCGTATACAAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGCGTCAACTCTGTCTGCCCTGGCTATGCCAAAACATATATAAACTTCAATACAGGTGTCTTACCTGTTGAAGAAGGTGCTGCAAGTGCCGTGTATTTAGCATTGCTGCCTAATGATGGCCCCACAGGCCAATTCTTTTTTCGATCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

20.34

Weight (kDa)

5.32

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 95 - 141 2e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AccII CGCG 1 cut(s) 384
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 4 cut(s) 5, 202, 371, 534
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 4 cut(s) 89, 284, 430, 452
AjnI CCWGG 2 cut(s) 149, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 3 cut(s) 296, 499, 508
ApeKI GCWGC 3 cut(s) 332, 461, 487
ApoI RAATTY 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 114, 196
BbvI GCAGC 3 cut(s) 344, 448, 474
BccI CCATC 1 cut(s) 491
BceAI ACGGC 1 cut(s) 455
BciT130I CCWGG 2 cut(s) 151, 402
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 359
BglI GCCNNNNNGGC 1 cut(s) 507
BisI GCNGC 3 cut(s) 333, 462, 488
BlsI GCNGC 3 cut(s) 334, 463, 489
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 151, 375, 402
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 3 cut(s) 151, 375, 402
BpmI CTGGAG 2 cut(s) 92, 133
Bpu10I CCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 150, 373, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 342, 482
BseBI CCWGG 2 cut(s) 151, 402
BseDI CCNNGG 3 cut(s) 150, 373, 400
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 2 cut(s) 342, 482
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 344, 448, 474
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 3 cut(s) 298, 501, 510
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 328
BsmI GAATGC 2 cut(s) 53, 346
BsnI GGCC 3 cut(s) 298, 501, 510
Bsp143I GATC 1 cut(s) 524
BspANI GGCC 3 cut(s) 298, 501, 510
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 384
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 502
BsrDI GCAATG 2 cut(s) 342, 482
BssECI CCNNGG 3 cut(s) 150, 373, 400
BssMI GATC 1 cut(s) 524
BssNAI GTATAC 1 cut(s) 348
Bst1107I GTATAC 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 151, 402
Bst4CI ACNGT 2 cut(s) 85, 322
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 197, 218
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 1 cut(s) 527
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 524
BstMWI GCNNNNNNNGC 3 cut(s) 341, 467, 507
BstNI CCWGG 2 cut(s) 151, 402
BstSCI CCNGG 3 cut(s) 149, 373, 400
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 344, 448, 474
BstXI CCANNNNNNTGG 1 cut(s) 180
BstZ17I GTATAC 1 cut(s) 348
BsuRI GGCC 3 cut(s) 298, 501, 510
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 373
Csp6I GTAC 4 cut(s) 4, 201, 370, 533
CviAII CATG 1 cut(s) 304
CviJI RGCY 7 cut(s) 112, 298, 315, 362, 405, 501, 510
CviKI_1 RGCY 7 cut(s) 112, 298, 315, 362, 405, 501, 510
CviQI GTAC 4 cut(s) 4, 201, 370, 533
DdeI CTNAG 2 cut(s) 197, 218
DpnI GATC 1 cut(s) 526
DpnII GATC 1 cut(s) 524
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 149, 400
FaeI CATG 1 cut(s) 307
FatI CATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 3 cut(s) 333, 462, 488
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 333, 462, 488
FspBI CTAG 1 cut(s) 359
GluI GCNGC 3 cut(s) 333, 462, 488
GsuI CTGGAG 2 cut(s) 92, 133
HaeIII GGCC 3 cut(s) 298, 501, 510
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 373
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 2 cut(s) 39, 388
HindII GTYRAC 2 cut(s) 39, 388
HinfI GANTC 1 cut(s) 355
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 1 cut(s) 375
HphI GGTGA 2 cut(s) 114, 196
Hpy166II GTNNAC 4 cut(s) 39, 278, 348, 388
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 4 cut(s) 39, 278, 348, 388
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 85, 322
HpyCH4V TGCA 2 cut(s) 55, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 467, 507
HpyF3I CTNAG 2 cut(s) 197, 218
Hsp92II CATG 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 524
Lsp1109I GCAGC 3 cut(s) 344, 448, 474
MaeI CTAG 1 cut(s) 359
MalI GATC 1 cut(s) 526
MboI GATC 1 cut(s) 524
MboII GAAGA 3 cut(s) 56, 236, 464
MluCI AATT 6 cut(s) 18, 61, 96, 129, 192, 512
MnlI CCTC 4 cut(s) 116, 157, 182, 275
MseI TTAA 4 cut(s) 38, 135, 161, 544
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 3 cut(s) 151, 375, 402
Mva1269I GAATGC 2 cut(s) 53, 346
MvaI CCWGG 2 cut(s) 151, 402
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 341, 467, 507
NciI CCSGG 1 cut(s) 375
NdeII GATC 1 cut(s) 524
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 502
PagI TCATGA 1 cut(s) 303
PctI GAATGC 2 cut(s) 53, 346
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 3 cut(s) 334, 463, 489
Psp6I CCWGG 2 cut(s) 149, 400
PspGI CCWGG 2 cut(s) 149, 400
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 500
RsaI GTAC 4 cut(s) 5, 202, 371, 534
RsaNI GTAC 4 cut(s) 4, 201, 370, 533
SaqAI TTAA 4 cut(s) 38, 135, 161, 544
SatI GCNGC 3 cut(s) 333, 462, 488
Sau3AI GATC 1 cut(s) 524
Sau96I GGNCC 1 cut(s) 500
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 3 cut(s) 151, 375, 402
SetI ASST 6 cut(s) 114, 219, 267, 439, 448, 460
SfiI GGCCNNNNNGGCC 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 6 cut(s) 18, 61, 96, 129, 192, 512
SspI AATATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 149, 373, 400
TaaI ACNGT 2 cut(s) 85, 322
TaqI TCGA 1 cut(s) 523
TasI AATT 6 cut(s) 18, 61, 96, 129, 192, 512
TatI WGTACW 3 cut(s) 3, 200, 532
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 4 cut(s) 38, 135, 161, 544
Tru9I TTAA 4 cut(s) 38, 135, 161, 544
TseI GCWGC 3 cut(s) 332, 461, 487
TspDTI ATGAA 4 cut(s) 132, 252, 292, 353
XapI RAATTY 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.