AT3G61220

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000170
Physical Location & Seq
Forward (+)
22662849 .. 22664493
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61220.2

Sequence Viewer

Length: 891 bp
ATGGCAGAGGAAACTCCAAGATATGCTGTAGTTACTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTAGCTAGTGAAGGGATTAGAGTTGTTTTGACCTCTAGAGACGAAAACAGAGGACTTGAAGCTGTTGAGACACTGAAGAAAGAGCTTGAGATTTCTGATCAAAGCCTTCTTTTTCATCAGCTTGATGTCGCTGATCCTGCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCAATTTGGGAAACTCGATATCTTGGTCAATAATGCAGGGATTGGTGGTATAATCACTGATGCTGAAGCTTTAAGAGCTGGGGCAGGGAAAGAAGGTTTCAAGTGGGATGAAATCATCACGGAGACTTATGAGTTAACTGAAGAATGCATCAAGATAAACTACTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCTCTTTTGAAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTCCATGGGTCAACTAAAGAATGTACTAAACGAATGGGCAAAAGGAATCCTGAGCGACGCAGAGAATCTCACTGAGGAAAGAATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGAAGGTACAGTTAAGGAAAAAAACTGGGCTAAATTTATGTCGGCTTATGTGGTTTCAAAGGCAAGTTTGAATGGTTACACGAGGGTCCTGGCGAAGAAACATCCCGAGTTTCGCGTAAACGCTGTGTGTCCTGGATTTGTTAAGACAGATATGAACTTCAAGACTGGAGTCTTGTCTGTGGAAGAAGGAGCTTCAAGTCCTGTGAGGTTGGCTTTACTTCCGCATCAAGAAACTCCTTCTGGTTGTTTCTTTAGTCGCAAGCAAGTTTCAGAATTCTGA

Protein Analysis

296

Amino Acids

32.8

Weight (kDa)

5.38

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 177 6.4e-30 short chain dehydrogenase
KR PF08659 17 - 104 1.5e-07 KR domain
adh_short_C2 PF13561 20 - 175 8.7e-21 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 222 - 263 4.1e-07 short chain dehydrogenase
adh_short_C2 PF13561 222 - 263 1.2e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 726
AciI CCGC 1 cut(s) 833
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 644, 884
AcuI CTGAAG 3 cut(s) 170, 333, 408
AfaI GTAC 2 cut(s) 516, 619
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 8 cut(s) 134, 349, 454, 610, 669, 682, 772, 807
AjnI CCWGG 2 cut(s) 699, 742
AluBI AGCT 7 cut(s) 80, 137, 160, 196, 317, 326, 803
AluI AGCT 7 cut(s) 80, 137, 160, 196, 317, 326, 803
Alw26I GTCTC 3 cut(s) 108, 137, 365
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 716
ApoI RAATTY 2 cut(s) 644, 884
AspS9I GGNCC 2 cut(s) 416, 697
AsuHPI GGTGA 1 cut(s) 459
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 416, 697
BauI CACGAG 1 cut(s) 691
BciT130I CCWGG 2 cut(s) 701, 744
BclI TGATCA 2 cut(s) 172, 585
BcoDI GTCTC 3 cut(s) 108, 137, 365
BfaI CTAG 3 cut(s) 81, 111, 216
BfmI CTRYAG 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 701, 744
Bme18I GGWCC 2 cut(s) 416, 697
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 2 cut(s) 416, 697
BmiI GGNNCC 1 cut(s) 698
BmrFI CCNGG 2 cut(s) 701, 744
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 3 cut(s) 298, 405, 844
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 779
BpmI CTGGAG 2 cut(s) 57, 798
Bpu10I CCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 3 cut(s) 40, 641, 781
BseBI CCWGG 2 cut(s) 701, 744
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 361, 488, 712
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 225, 533, 555
BseNI ACTGG 3 cut(s) 40, 641, 781
BseYI CCCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 3 cut(s) 108, 137, 365
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 716
Bsp143I GATC 3 cut(s) 172, 208, 585
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 1 cut(s) 833
BspCNI CTCAG 3 cut(s) 226, 534, 556
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 1 cut(s) 698
BspPI GGATC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 40, 641, 781
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 172, 208, 585
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 2 cut(s) 701, 744
Bst4CI ACNGT 1 cut(s) 622
BstC8I GCNNGC 1 cut(s) 872
BstDEI CTNAG 3 cut(s) 234, 542, 564
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 3 cut(s) 361, 488, 712
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 3 cut(s) 175, 211, 588
BstMAI GTCTC 3 cut(s) 108, 137, 365
BstMBI GATC 3 cut(s) 172, 208, 585
BstMWI GCNNNNNNNGC 2 cut(s) 212, 323
BstNI CCWGG 2 cut(s) 701, 744
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 699, 742
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 3 cut(s) 361, 488, 712
BtsIMutI CAGTG 3 cut(s) 146, 303, 561
Cac8I GCNNGC 1 cut(s) 872
Cfr13I GGNCC 2 cut(s) 416, 697
CseI GACGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 515, 618
CviAII CATG 1 cut(s) 496
CviQI GTAC 2 cut(s) 515, 618
DdeI CTNAG 3 cut(s) 234, 542, 564
DpnI GATC 3 cut(s) 174, 210, 587
DpnII GATC 3 cut(s) 172, 208, 585
Eco130I CCWWGG 1 cut(s) 495
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 416, 697
Eco57I CTGAAG 3 cut(s) 170, 333, 408
Eco88I CYCGRG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 697
EcoRI GAATTC 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 699, 742
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 1 cut(s) 499
FaiI YATR 9 cut(s) 24, 67, 299, 378, 414, 497, 650, 660, 764
FatI CATG 1 cut(s) 495
FbaI TGATCA 2 cut(s) 172, 585
FokI GGATG 3 cut(s) 368, 475, 699
FspBI CTAG 3 cut(s) 81, 111, 216
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 2 cut(s) 57, 798
HgaI GACGC 1 cut(s) 557
Hin1II CATG 1 cut(s) 499
HincII GTYRAC 2 cut(s) 384, 503
HindII GTYRAC 2 cut(s) 384, 503
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 6 cut(s) 464, 474, 537, 556, 573, 780
HpaI GTTAAC 1 cut(s) 384
HphI GGTGA 1 cut(s) 459
Hpy166II GTNNAC 3 cut(s) 384, 503, 730
Hpy188I TCNGA 4 cut(s) 172, 463, 883, 890
Hpy188III TCNNGA 6 cut(s) 111, 400, 541, 716, 772, 839
Hpy8I GTNNAC 3 cut(s) 384, 503, 730
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 6 cut(s) 80, 191, 335, 608, 791, 858
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4V TGCA 3 cut(s) 69, 284, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 323
HpyF3I CTNAG 3 cut(s) 234, 542, 564
Hsp92II CATG 1 cut(s) 499
Ksp22I TGATCA 2 cut(s) 172, 585
KspAI GTTAAC 1 cut(s) 384
Kzo9I GATC 3 cut(s) 172, 208, 585
LmnI GCTCC 2 cut(s) 38, 800
LweI GCATC 3 cut(s) 298, 405, 844
MaeI CTAG 3 cut(s) 81, 111, 216
MaeIII GTNAC 2 cut(s) 31, 686
MalI GATC 3 cut(s) 174, 210, 587
MboI GATC 3 cut(s) 172, 208, 585
MboII GAAGA 4 cut(s) 163, 401, 718, 806
MluCI AATT 4 cut(s) 74, 251, 644, 884
MlyI GAGTC 1 cut(s) 789
MnlI CCTC 9 cut(s) 41, 118, 119, 427, 456, 502, 559, 687, 810
Mph1103I ATGCAT 1 cut(s) 398
MseI TTAA 4 cut(s) 320, 383, 624, 753
MspR9I CCNGG 2 cut(s) 701, 744
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 2 cut(s) 701, 744
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 212, 323
NcoI CCATGG 1 cut(s) 495
NdeII GATC 3 cut(s) 172, 208, 585
NlaIII CATG 1 cut(s) 499
NlaIV GGNNCC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 398
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 5 cut(s) 464, 474, 537, 556, 573
PfoI TCCNGGA 1 cut(s) 742
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PpuMI RGGWCCY 1 cut(s) 697
PshAI GACNNNNGTC 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 697
Psp6I CCWGG 2 cut(s) 699, 742
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 699, 742
PspN4I GGNNCC 1 cut(s) 698
PspPI GGNCC 2 cut(s) 416, 697
PspPPI RGGWCCY 1 cut(s) 697
RsaI GTAC 2 cut(s) 516, 619
RsaNI GTAC 2 cut(s) 515, 618
SaqAI TTAA 4 cut(s) 320, 383, 624, 753
Sau3AI GATC 3 cut(s) 172, 208, 585
Sau96I GGNCC 2 cut(s) 416, 697
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 2 cut(s) 701, 744
SfaNI GCATC 3 cut(s) 298, 405, 844
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 2 cut(s) 416, 697
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 4 cut(s) 74, 251, 644, 884
SsiI CCGC 1 cut(s) 833
SspMI CTAG 3 cut(s) 81, 111, 216
StyD4I CCNGG 2 cut(s) 699, 742
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 264, 576
TasI AATT 4 cut(s) 74, 251, 644, 884
TatI WGTACW 1 cut(s) 514
TfiI GAWTC 5 cut(s) 464, 474, 537, 556, 573
Tru1I TTAA 4 cut(s) 320, 383, 624, 753
Tru9I TTAA 4 cut(s) 320, 383, 624, 753
TscAI CASTG 3 cut(s) 153, 310, 568
TspDTI ATGAA 3 cut(s) 179, 372, 779
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 153, 310, 568
VpaK11BI GGWCC 2 cut(s) 416, 697
XapI RAATTY 2 cut(s) 644, 884
XbaI TCTAGA 1 cut(s) 110
XspI CTAG 3 cut(s) 81, 111, 216
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.