Rmu_sc0011028.1_g000013

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011028.1
OG0000170
Physical Location & Seq
Forward (+)
58997 .. 61099
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011028.1_g000013.1.cds

Sequence Viewer

Length: 1119 bp
atggcagaatcaactatgaggtatgcagttgtgacaggatcaaacaaaggaatcggatttgaaactgtaaggcagttggcctcgactggaatcactgtggtgttaactgctagagatgagaagagagggcttgaagctgttgagaagctgaaagagtctggcctctcgggccaagtagtttttcaccaacttgatgtggctgaccctgctagtattgattctctagcacaattcatcaaaactcagtttgggaagctcgatattttggtgaacaatgctggaatttttggagctatagttgatgttgatggttttaaagctgcaattgcctctggtgctgtaagggaagcaggacagattgatttcaaaaagttgttgactgaaacttatgagttaacagaagaatgcttgcaaatcaattattatggtgctaaaagaacaactgaagccctgattccactccttcagctatctgattcaccaagaatcgttaatgtttcatcctctatggggaaattagagaacataccaagtgatcgggtgaaaggacttcttagtactgatgtggagaacctaagcgaagagagtgtagatgaagtattgacagagtttctaaacgacctcaaggagagtttacttgaaagcaagggttggccttctgcgatgtcaggctatatactctcaaaagcagcaatgaatgcatatacgaggattctagccaagaagtacccctgttttcgggtcaactctgtttgccctggctatgtcaaaacagatataaacttcaatactggtgtcttgcctgttgaagaaggtgctgcaagtgtcgtgaatttagcattgctgcctaatgatggcctcacaggccaattctttgttcggtataattgctccaagaattttgtgggatccagtgtggtgccgtggaatctgtttggcttctgggttggagaattcattggcgcttgcatatctgtgacgacgttggacgatgcgggtttctttctccagtggctgcgctggatcgatacgattttgatgcaggcggcctcaatgttgctggtttggccggtcaatttctgggttgatctgctattccagggaggcagttggcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

372

Amino Acids

40.74

Weight (kDa)

4.8

Isoelectric Point (pI)

27.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 919
AciI CCGC 2 cut(s) 995, 1046
AclWI GGATC 4 cut(s) 46, 903, 916, 1031
AcoI YGGCCR 1 cut(s) 1067
AcsI RAATTY 4 cut(s) 282, 832, 898, 953
AcuI CTGAAG 2 cut(s) 449, 465
AfaI GTAC 2 cut(s) 559, 728
AfiI CCNNNNNNNGG 3 cut(s) 510, 738, 854
AgsI TTSAA 6 cut(s) 62, 134, 367, 641, 787, 809
AjnI CCWGG 2 cut(s) 757, 1098
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 861, 893
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 6 cut(s) 137, 148, 256, 293, 320, 469
AluI AGCT 6 cut(s) 137, 148, 256, 293, 320, 469
AlwI GGATC 4 cut(s) 46, 903, 916, 1031
AlwNI CAGNNNCTG 1 cut(s) 1015
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 8 cut(s) 78, 160, 169, 653, 856, 865, 1047, 1067
ApeKI GCWGC 5 cut(s) 320, 689, 818, 844, 1015
ApoI RAATTY 4 cut(s) 282, 832, 898, 953
AspLEI GCGC 2 cut(s) 965, 1020
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 4 cut(s) 176, 280, 471, 553
AvaI CYCGRG 1 cut(s) 166
BamHI GGATCC 1 cut(s) 908
BanI GGYRCC 1 cut(s) 919
BbvI GCAGC 5 cut(s) 307, 701, 805, 831, 1002
BccI CCATC 2 cut(s) 302, 848
BceAI ACGGC 1 cut(s) 907
BcgI CGANNNNNNTGC 2 cut(s) 1021, 1055
BciT130I CCWGG 2 cut(s) 759, 1100
BfaI CTAG 4 cut(s) 111, 210, 224, 716
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 966
BglI GCCNNNNNGGC 2 cut(s) 168, 864
BisI GCNGC 6 cut(s) 321, 690, 819, 845, 1016, 1047
BlsI GCNGC 6 cut(s) 322, 691, 820, 846, 1017, 1048
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 759, 1100
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 910, 921
BmrFI CCNGG 2 cut(s) 759, 1100
BmsI GCATC 2 cut(s) 982, 1029
BpmI CTGGAG 1 cut(s) 992
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 1026
BsaJI CCNNGG 3 cut(s) 757, 923, 1099
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 738, 854
Bse118I RCCGGY 1 cut(s) 1069
Bse1I ACTGG 4 cut(s) 91, 796, 912, 1009
Bse3DI GCAATG 2 cut(s) 699, 839
BseBI CCWGG 2 cut(s) 759, 1100
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 757, 923, 1099
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 3 cut(s) 510, 738, 854
BseMI GCAATG 2 cut(s) 699, 839
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 4 cut(s) 91, 796, 912, 1009
BseXI GCAGC 5 cut(s) 307, 701, 805, 831, 1002
BshFI GGCC 8 cut(s) 80, 162, 171, 655, 858, 867, 1049, 1069
BshNI GGYRCC 1 cut(s) 919
BshVI ATCGAT 1 cut(s) 1026
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 1070
BslI CCNNNNNNNGG 3 cut(s) 510, 738, 854
BsmI GAATGC 2 cut(s) 410, 703
BsnI GGCC 8 cut(s) 80, 162, 171, 655, 858, 867, 1049, 1069
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 5 cut(s) 38, 535, 908, 1023, 1087
BspACI CCGC 2 cut(s) 995, 1046
BspANI GGCC 8 cut(s) 80, 162, 171, 655, 858, 867, 1049, 1069
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 1026
BspLI GGNNCC 2 cut(s) 910, 921
BspPI GGATC 4 cut(s) 46, 903, 916, 1031
BspT107I GGYRCC 1 cut(s) 919
BsrDI GCAATG 2 cut(s) 699, 839
BsrFI RCCGGY 1 cut(s) 1069
BsrI ACTGG 4 cut(s) 91, 796, 912, 1009
BssAI RCCGGY 1 cut(s) 1069
BssECI CCNNGG 3 cut(s) 757, 923, 1099
BssMI GATC 5 cut(s) 38, 535, 908, 1023, 1087
Bst2UI CCWGG 2 cut(s) 759, 1100
Bst4CI ACNGT 2 cut(s) 67, 97
Bst6I CTCTTC 2 cut(s) 116, 576
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 3 cut(s) 410, 967, 1044
BstDEI CTNAG 3 cut(s) 243, 554, 575
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 2 cut(s) 965, 1020
BstKTI GATC 5 cut(s) 41, 538, 911, 1026, 1090
BstMBI GATC 5 cut(s) 38, 535, 908, 1023, 1087
BstMWI GCNNNNNNNGC 7 cut(s) 168, 206, 326, 335, 698, 864, 1066
BstNI CCWGG 2 cut(s) 759, 1100
BstSCI CCNGG 2 cut(s) 757, 1098
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 5 cut(s) 307, 701, 805, 831, 1002
BstX2I RGATCY 1 cut(s) 908
BstYI RGATCY 1 cut(s) 908
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 8 cut(s) 80, 162, 171, 655, 858, 867, 1049, 1069
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 1 cut(s) 923
BtgZI GCGATG 1 cut(s) 677
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 3 cut(s) 93, 919, 1016
Cac8I GCNNGC 3 cut(s) 410, 967, 1044
CaiI CAGNNNCTG 1 cut(s) 1015
CfoI GCGC 2 cut(s) 965, 1020
Cfr10I RCCGGY 1 cut(s) 1069
Cfr13I GGNCC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 1026
Csp6I GTAC 2 cut(s) 558, 727
CviQI GTAC 2 cut(s) 558, 727
DdeI CTNAG 3 cut(s) 243, 554, 575
DpnI GATC 5 cut(s) 40, 537, 910, 1025, 1089
DpnII GATC 5 cut(s) 38, 535, 908, 1023, 1087
DraI TTTAAA 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 1067
Eam1104I CTCTTC 2 cut(s) 116, 576
EarI CTCTTC 2 cut(s) 116, 576
Eco57I CTGAAG 2 cut(s) 449, 465
Eco88I CYCGRG 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 757, 1098
EcoT22I ATGCAT 1 cut(s) 703
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FauI CCCGC 1 cut(s) 988
Fnu4HI GCNGC 6 cut(s) 321, 690, 819, 845, 1016, 1047
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 6 cut(s) 321, 690, 819, 845, 1016, 1047
FspBI CTAG 4 cut(s) 111, 210, 224, 716
GlaI GCGC 2 cut(s) 964, 1019
GluI GCNGC 6 cut(s) 321, 690, 819, 845, 1016, 1047
GsuI CTGGAG 1 cut(s) 992
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 8 cut(s) 80, 162, 171, 655, 858, 867, 1049, 1069
HapII CCGG 1 cut(s) 1070
HhaI GCGC 2 cut(s) 965, 1020
Hin6I GCGC 2 cut(s) 963, 1018
HinP1I GCGC 2 cut(s) 963, 1018
HincII GTYRAC 4 cut(s) 105, 378, 396, 745
HindII GTYRAC 4 cut(s) 105, 378, 396, 745
HpaI GTTAAC 2 cut(s) 105, 396
HpaII CCGG 1 cut(s) 1070
HphI GGTGA 4 cut(s) 176, 280, 471, 553
Hpy166II GTNNAC 6 cut(s) 105, 271, 378, 396, 635, 745
Hpy188I TCNGA 2 cut(s) 56, 475
Hpy188III TCNNGA 1 cut(s) 829
Hpy8I GTNNAC 6 cut(s) 105, 271, 378, 396, 635, 745
Hpy99I CGWCG 1 cut(s) 985
HpyAV CCTTC 3 cut(s) 473, 666, 806
HpyCH4III ACNGT 2 cut(s) 67, 97
HpyCH4IV ACGT 1 cut(s) 983
HpyCH4V TGCA 7 cut(s) 26, 323, 412, 701, 821, 969, 1042
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 206, 326, 335, 698, 864, 1066
HpyF3I CTNAG 3 cut(s) 243, 554, 575
HpySE526I ACGT 1 cut(s) 983
HspAI GCGC 2 cut(s) 963, 1018
KspAI GTTAAC 2 cut(s) 105, 396
Kzo9I GATC 5 cut(s) 38, 535, 908, 1023, 1087
LmnI GCTCC 2 cut(s) 290, 896
Lsp1109I GCAGC 5 cut(s) 307, 701, 805, 831, 1002
LweI GCATC 2 cut(s) 982, 1029
MaeI CTAG 4 cut(s) 111, 210, 224, 716
MaeII ACGT 1 cut(s) 983
MaeIII GTNAC 2 cut(s) 31, 976
MalI GATC 5 cut(s) 40, 537, 910, 1025, 1089
MboI GATC 5 cut(s) 38, 535, 908, 1023, 1087
MboII GAAGA 4 cut(s) 133, 413, 593, 821
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 908
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 928, 966
Mph1103I ATGCAT 1 cut(s) 703
MseI TTAA 4 cut(s) 104, 315, 395, 492
MslI CAYNNNNRTG 2 cut(s) 98, 974
MspI CCGG 1 cut(s) 1070
MspR9I CCNGG 2 cut(s) 759, 1100
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 410, 703
MvaI CCWGG 2 cut(s) 759, 1100
MwoI GCNNNNNNNGC 7 cut(s) 168, 206, 326, 335, 698, 864, 1066
NdeII GATC 5 cut(s) 38, 535, 908, 1023, 1087
NlaIV GGNNCC 2 cut(s) 910, 921
NmuCI GTSAC 2 cut(s) 31, 976
NsiI ATGCAT 1 cut(s) 703
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 2 cut(s) 410, 703
PfeI GAWTC 9 cut(s) 8, 51, 90, 218, 454, 476, 486, 712, 928
PkrI GCNGC 6 cut(s) 322, 691, 820, 846, 1017, 1048
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 757, 1098
PspGI CCWGG 2 cut(s) 757, 1098
PspN4I GGNNCC 2 cut(s) 910, 921
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 1015
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 2 cut(s) 559, 728
RsaNI GTAC 2 cut(s) 558, 727
RseI CAYNNNNRTG 2 cut(s) 98, 974
SaqAI TTAA 4 cut(s) 104, 315, 395, 492
SatI GCNGC 6 cut(s) 321, 690, 819, 845, 1016, 1047
Sau3AI GATC 5 cut(s) 38, 535, 908, 1023, 1087
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 759, 1100
SfaNI GCATC 2 cut(s) 982, 1029
SfcI CTRYAG 1 cut(s) 294
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 864
SmiMI CAYNNNNRTG 2 cut(s) 98, 974
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SsiI CCGC 2 cut(s) 995, 1046
SspMI CTAG 4 cut(s) 111, 210, 224, 716
StyD4I CCNGG 2 cut(s) 757, 1098
TaaI ACNGT 2 cut(s) 67, 97
TaiI ACGT 1 cut(s) 986
TaqI TCGA 3 cut(s) 83, 258, 1026
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 9 cut(s) 8, 51, 90, 218, 454, 476, 486, 712, 928
Tru1I TTAA 4 cut(s) 104, 315, 395, 492
Tru9I TTAA 4 cut(s) 104, 315, 395, 492
TscAI CASTG 3 cut(s) 100, 919, 1016
TseFI GTSAC 2 cut(s) 31, 976
TseI GCWGC 5 cut(s) 320, 689, 818, 844, 1015
Tsp45I GTSAC 2 cut(s) 31, 976
TspDTI ATGAA 5 cut(s) 223, 489, 609, 710, 946
TspRI CASTG 3 cut(s) 100, 919, 1016
XapI RAATTY 4 cut(s) 282, 832, 898, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 901
XspI CTAG 4 cut(s) 111, 210, 224, 716
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.