Rorug01G0236600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000170
Physical Location & Seq
Forward (+)
34103175 .. 34105909
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0236600.1

Sequence Viewer

Length: 774 bp
ATGAAGTTCGGCAAGAAGCTGAAGCACCAAATACAGGAGTCGTTGCTGGGCTGGCGGGACAAGTTCTTGTCATACAATGACTTGAAGAAGCTTGTGAGGCTGATTTCTTCTTCTCCGGTGGTGTTGAATGGGAATTCTGGTAAGGCGGAGGAGGAGTTTGTGTACCTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGAACTTCATTATCCGGAACGAGGAATTGCAGCAGAGAATAAAAAAGGTAACTGATACATGGGGACCCAATGGCAGTCAGCCTTCAAACACTATATATGAAGATGAAGTGGGGCAGCTTAGAAAAGACATTGTTGATTTCCACGGCGAAATGGTGCTCTTGGTCAACTATAGCAACATCAATTACACAGGATTGGCCAAAATACTGAAGAAGTATGACAAGAGAACAGGATCTCTGCTGCGCTTGCCATTTATCCAAAAAATACTAGAGCAGCCCTTCCTCACCATTGATCTGATCTCAAAGCTTGTGAAGGAATGTGAAAGCACCATTAATGCAGTGTTTCCGGTGGAGGAAGAAGAGGAGAGGAAAAGAGAAGTAAAGGAAGCGATAACAGTTGCCGGGGAAGGAATATTTAGAAACACAGTTGCCGCTCTATTGACAATGCAAGAAATCAGAAAAGGAAGCTCTACTTACAGTCAGTATTCTCTACCACCAATCATTGTAGACTCGGATCTCATCCAGTTAGTCCAACTCAACCCTCCCATAGCAATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

257

Amino Acids

29.55

Weight (kDa)

5.67

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 101 - 159 4.4e-10 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 647
AccI GTMKAC 1 cut(s) 720
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 3 cut(s) 55, 146, 645
AclWI GGATC 2 cut(s) 454, 735
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 41, 443
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 34, 238
AgsI TTSAA 5 cut(s) 85, 127, 172, 193, 303
AluBI AGCT 5 cut(s) 19, 91, 334, 520, 681
AluI AGCT 5 cut(s) 19, 91, 334, 520, 681
Alw21I GWGCWC 1 cut(s) 375
AlwI GGATC 2 cut(s) 454, 735
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 4 cut(s) 247, 331, 454, 487
ApoI RAATTY 1 cut(s) 133
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 259, 343, 441, 499
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 1 cut(s) 616
BfaI CTAG 2 cut(s) 482, 772
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 5 cut(s) 248, 332, 455, 488, 645
BlsI GCNGC 5 cut(s) 249, 333, 456, 489, 646
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 282, 283
BmrFI CCNGG 1 cut(s) 616
BpuMI CCSGG 1 cut(s) 616
BsaJI CCNNGG 2 cut(s) 358, 615
BsaWI WCCGGW 3 cut(s) 115, 231, 559
BsaXI ACNNNNNCTCC 4 cut(s) 140, 146, 170, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 238
Bse1I ACTGG 1 cut(s) 736
BseAI TCCGGA 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 358, 615
BseGI GGATG 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 34, 238
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 4 cut(s) 164, 167, 230, 590
BseXI GCAGC 4 cut(s) 259, 343, 441, 499
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 4 cut(s) 116, 232, 560, 615
BslFI GGGAC 2 cut(s) 71, 294
BslI CCNNNNNNNGG 2 cut(s) 34, 238
BsmFI GGGAC 2 cut(s) 71, 294
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 375
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 5 cut(s) 180, 446, 505, 510, 727
BspACI CCGC 3 cut(s) 55, 146, 645
BspANI GGCC 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 282, 283
BspPI GGATC 2 cut(s) 454, 735
BsrBI CCGCTC 1 cut(s) 647
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 358, 615
BssMI GATC 5 cut(s) 180, 446, 505, 510, 727
Bst4CI ACNGT 3 cut(s) 610, 640, 692
Bst6I CTCTTC 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 53, 461
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 5 cut(s) 183, 449, 508, 513, 730
BstMBI GATC 5 cut(s) 180, 446, 505, 510, 727
BstMWI GCNNNNNNNGC 3 cut(s) 52, 97, 460
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 259, 343, 441, 499
BstX2I RGATCY 2 cut(s) 446, 727
BstYI RGATCY 2 cut(s) 446, 727
BsuRI GGCC 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 1 cut(s) 732
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 53, 461
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 205, 276
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 335
DpnI GATC 5 cut(s) 182, 448, 507, 512, 729
DpnII GATC 5 cut(s) 180, 446, 505, 510, 727
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 41, 443
EcoO109I RGGNCCY 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 133
FaeI CATG 2 cut(s) 208, 279
FaiI YATR 9 cut(s) 73, 206, 277, 311, 313, 315, 387, 432, 761
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FaqI GGGAC 2 cut(s) 71, 294
FatI CATG 2 cut(s) 204, 275
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 248, 332, 455, 488, 645
FokI GGATG 1 cut(s) 719
Fsp4HI GCNGC 5 cut(s) 248, 332, 455, 488, 645
FspBI CTAG 2 cut(s) 482, 772
GlaI GCGC 1 cut(s) 458
GluI GCNGC 5 cut(s) 248, 332, 455, 488, 645
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 413
HapII CCGG 4 cut(s) 116, 232, 560, 615
HhaI GCGC 1 cut(s) 459
Hin1II CATG 2 cut(s) 208, 279
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 89, 518
HinfI GANTC 2 cut(s) 38, 722
HpaII CCGG 4 cut(s) 116, 232, 560, 615
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 3 cut(s) 163, 382, 721
Hpy188I TCNGA 3 cut(s) 510, 671, 727
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 3 cut(s) 163, 382, 721
HpyAV CCTTC 5 cut(s) 208, 309, 502, 520, 614
HpyCH4III ACNGT 3 cut(s) 610, 640, 692
HpyCH4V TGCA 3 cut(s) 247, 551, 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 97, 460
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 208, 279
HspAI GCGC 1 cut(s) 457
KflI GGGWCCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 5 cut(s) 180, 446, 505, 510, 727
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 4 cut(s) 259, 343, 441, 499
MaeI CTAG 2 cut(s) 482, 772
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 182, 448, 507, 512, 729
MbiI CCGCTC 1 cut(s) 647
MboI GATC 5 cut(s) 180, 446, 505, 510, 727
MboII GAAGA 8 cut(s) 97, 99, 102, 193, 329, 436, 581, 584
MflI RGATCY 2 cut(s) 446, 727
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 3 cut(s) 133, 242, 397
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 47, 716
MmeI TCCRAC 1 cut(s) 769
Mox20I TGGCCA 1 cut(s) 413
MroI TCCGGA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 413
MseI TTAA 1 cut(s) 546
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 4 cut(s) 116, 232, 560, 615
MspR9I CCNGG 1 cut(s) 616
MwoI GCNNNNNNNGC 3 cut(s) 52, 97, 460
NciI CCSGG 1 cut(s) 616
NdeII GATC 5 cut(s) 180, 446, 505, 510, 727
NlaIII CATG 2 cut(s) 208, 279
NlaIV GGNNCC 2 cut(s) 282, 283
PkrI GCNGC 5 cut(s) 249, 333, 456, 489, 646
PleI GAGTC 2 cut(s) 46, 716
PpsI GAGTC 2 cut(s) 46, 716
PpuMI RGGWCCY 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 282, 283
PspPI GGNCC 1 cut(s) 281
PspPPI RGGWCCY 1 cut(s) 281
PsuI RGATCY 2 cut(s) 446, 727
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 5 cut(s) 248, 332, 455, 488, 645
Sau3AI GATC 5 cut(s) 180, 446, 505, 510, 727
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 47, 716
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 21, 93, 168, 267, 336, 522, 683
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 281
Sse9I AATT 3 cut(s) 133, 242, 397
SsiI CCGC 3 cut(s) 55, 146, 645
SspI AATATT 2 cut(s) 627, 768
SspMI CTAG 2 cut(s) 482, 772
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 3 cut(s) 610, 640, 692
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 133, 242, 397
TauI GCSGC 1 cut(s) 647
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 558
TseI GCWGC 4 cut(s) 247, 331, 454, 487
TspDTI ATGAA 5 cut(s) 17, 193, 214, 330, 336
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 2 cut(s) 482, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.