Rmu_sc0011028.1_g000012

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011028.1
OG0000170
Physical Location & Seq
Forward (+)
56603 .. 56998
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011028.1_g000012.1.cds

Sequence Viewer

Length: 396 bp
atggggaagttaaagaacataccaagtgatcgagtgaaaggagttcttagtactgatgtggagaacctaagtgaagagagtgtagatgaagtactgacagagtttctaaacgatttcaaagagaatttacttgaaagcaagggttggccttctatgatgccaggctatacagtttcaaaagcagcaatgaatgcatatacaaggattctagccaagaagtaccccagttttcgcgtcaactctgtctgccctggctatgtcaaaacagatataaacttcaatactggcgtcttgcctgttgaagaaggtgctgcaagtgtcgtgaatttagcattgctgcctaatgatggccccacaggccaattctttgatcggtctgaagtaccaagtctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

4.83

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AcsI RAATTY 2 cut(s) 124, 325
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 4 cut(s) 52, 93, 221, 384
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 5 cut(s) 118, 134, 177, 280, 302
AjnI CCWGG 2 cut(s) 160, 250
AoxI GGCC 3 cut(s) 146, 349, 358
ApeKI GCWGC 3 cut(s) 182, 311, 337
ApoI RAATTY 2 cut(s) 124, 325
AspS9I GGNCC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 194, 298, 324
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 162, 252
BfaI CTAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 183, 312, 338
BlsI GCNGC 3 cut(s) 184, 313, 339
BmcAI AGTACT 2 cut(s) 52, 93
Bme1390I CCNGG 2 cut(s) 162, 252
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 162, 252
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 225, 289
Bse3DI GCAATG 2 cut(s) 192, 332
BseBI CCWGG 2 cut(s) 162, 252
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 192, 332
BseNI ACTGG 2 cut(s) 225, 289
BseXI GCAGC 3 cut(s) 194, 298, 324
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 148, 351, 360
BslI CCNNNNNNNGG 1 cut(s) 347
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 3 cut(s) 148, 351, 360
Bsp143I GATC 2 cut(s) 28, 370
BspANI GGCC 3 cut(s) 148, 351, 360
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 192, 332
BsrI ACTGG 2 cut(s) 225, 289
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 28, 370
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 162, 252
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 47, 68
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 31, 373
BstMBI GATC 2 cut(s) 28, 370
BstMWI GCNNNNNNNGC 2 cut(s) 191, 357
BstNI CCWGG 2 cut(s) 162, 252
BstSCI CCNGG 2 cut(s) 160, 250
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 194, 298, 324
BsuRI GGCC 3 cut(s) 148, 351, 360
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 2 cut(s) 223, 277
Csp6I GTAC 4 cut(s) 51, 92, 220, 383
CviJI RGCY 6 cut(s) 148, 165, 212, 255, 351, 360
CviKI_1 RGCY 6 cut(s) 148, 165, 212, 255, 351, 360
CviQI GTAC 4 cut(s) 51, 92, 220, 383
DdeI CTNAG 2 cut(s) 47, 68
DpnI GATC 2 cut(s) 30, 372
DpnII GATC 2 cut(s) 28, 370
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 160, 250
EcoT22I ATGCAT 1 cut(s) 196
FaiI YATR 7 cut(s) 20, 155, 168, 196, 198, 258, 272
FalI AAGNNNNNCTT 2 cut(s) 30, 62
Fnu4HI GCNGC 3 cut(s) 183, 312, 338
Fsp4HI GCNGC 3 cut(s) 183, 312, 338
FspBI CTAG 1 cut(s) 209
GluI GCNGC 3 cut(s) 183, 312, 338
HaeIII GGCC 3 cut(s) 148, 351, 360
HgaI GACGC 2 cut(s) 223, 277
Hin1I GRCGYC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 159, 299
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 194, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 357
HpyF3I CTNAG 2 cut(s) 47, 68
Hsp92I GRCGYC 1 cut(s) 288
Kzo9I GATC 2 cut(s) 28, 370
LpnPI CCDG 8 cut(s) 147, 174, 237, 238, 264, 270, 309, 342
Lsp1109I GCAGC 3 cut(s) 194, 298, 324
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 209
MalI GATC 2 cut(s) 30, 372
MboI GATC 2 cut(s) 28, 370
MboII GAAGA 2 cut(s) 86, 314
MluCI AATT 3 cut(s) 124, 325, 362
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 2 cut(s) 11, 394
MspR9I CCNGG 2 cut(s) 162, 252
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 162, 252
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 191, 357
NdeII GATC 2 cut(s) 28, 370
NlaIV GGNNCC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 196
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 184, 313, 339
Psp6I CCWGG 2 cut(s) 160, 250
PspGI CCWGG 2 cut(s) 160, 250
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 4 cut(s) 52, 93, 221, 384
RsaNI GTAC 4 cut(s) 51, 92, 220, 383
SaqAI TTAA 2 cut(s) 11, 394
SatI GCNGC 3 cut(s) 183, 312, 338
Sau3AI GATC 2 cut(s) 28, 370
Sau96I GGNCC 1 cut(s) 350
ScaI AGTACT 2 cut(s) 52, 93
ScrFI CCNGG 2 cut(s) 162, 252
SetI ASST 2 cut(s) 69, 310
SfaNI GCATC 1 cut(s) 147
SfiI GGCCNNNNNGGCC 1 cut(s) 357
Sse9I AATT 3 cut(s) 124, 325, 362
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 160, 250
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 31
TaqII GACCGA 1 cut(s) 363
TasI AATT 3 cut(s) 124, 325, 362
TatI WGTACW 2 cut(s) 50, 91
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 11, 394
Tru9I TTAA 2 cut(s) 11, 394
TseI GCWGC 3 cut(s) 182, 311, 337
TspDTI ATGAA 2 cut(s) 102, 203
XapI RAATTY 2 cut(s) 124, 325
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 2 cut(s) 52, 93
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.