Rmu_sc0027167.1_g000001

( )-neomenthol

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027167.1
Physical Location & Seq
Forward (+)
99 .. 662
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027167.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
atgcaggaaccaggacagattgattggaaaaagctgttgactgaaacttacgagttaagagaagaatgcttgcaaattaattattacggtgctaagagaacagctgaagcactaattccactcctccagctatctgattcaccaagaattgttaatgtttcatcctctatggggcagttaaagaacataccaagtgatcgagtgaaaggagttcttagtactgatgtcgagaacctaagcgaagagagtgtagatgaaatattgacagggtttctaaacgacctcaaggagagtttacttgaaagcaagggttggccttctgtgatgtcaggctatatactctcaaaagcagcaatgaatgcatatacaaggattctagccaagaagtaccccggttttcgtgtcaattctgtatgccctggctatgtcaaaacagatataaacttcaatggcggcgtcattcctgttgaagaaggtgctgcaagtgttgtaaatttagcattgctgcctaatgatggccacacaggccagttcttttttcggtctgaaatacagagtctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

20.68

Weight (kDa)

5.0

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 220, 389
AfiI CCNNNNNNNGG 2 cut(s) 171, 515
AgsI TTSAA 3 cut(s) 302, 448, 470
AjnI CCWGG 2 cut(s) 10, 418
AluBI AGCT 3 cut(s) 34, 104, 130
AluI AGCT 3 cut(s) 34, 104, 130
AoxI GGCC 3 cut(s) 314, 517, 526
ApeKI GCWGC 3 cut(s) 350, 479, 505
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 132
BalI TGGCCA 1 cut(s) 519
BbvI GCAGC 3 cut(s) 362, 466, 492
BccI CCATC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 12, 420
BcnI CCSGG 1 cut(s) 393
BfaI CTAG 1 cut(s) 377
BglI GCCNNNNNGGC 1 cut(s) 525
BisI GCNGC 4 cut(s) 351, 454, 480, 506
BlsI GCNGC 4 cut(s) 352, 455, 481, 507
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 3 cut(s) 12, 393, 420
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 12, 393, 420
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 391, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 515
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 2 cut(s) 360, 500
BseBI CCWGG 2 cut(s) 12, 420
BseDI CCNNGG 2 cut(s) 391, 418
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 171, 515
BseMI GCAATG 2 cut(s) 360, 500
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 362, 466, 492
BshFI GGCC 3 cut(s) 316, 519, 528
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 171, 515
BsmI GAATGC 2 cut(s) 71, 364
BsnI GGCC 3 cut(s) 316, 519, 528
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 453
BspANI GGCC 3 cut(s) 316, 519, 528
BspLI GGNNCC 1 cut(s) 9
BsrDI GCAATG 2 cut(s) 360, 500
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 2 cut(s) 391, 418
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 12, 420
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 93, 215, 236
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 359, 525
BstNI CCWGG 2 cut(s) 12, 420
BstSCI CCNGG 3 cut(s) 10, 391, 418
BstV1I GCAGC 3 cut(s) 362, 466, 492
BsuRI GGCC 3 cut(s) 316, 519, 528
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 71
CseI GACGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 219, 388
CviJI RGCY 9 cut(s) 34, 104, 130, 316, 333, 380, 423, 519, 528
CviKI_1 RGCY 9 cut(s) 34, 104, 130, 316, 333, 380, 423, 519, 528
CviQI GTAC 2 cut(s) 219, 388
DdeI CTNAG 3 cut(s) 93, 215, 236
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 10, 418
EcoT22I ATGCAT 1 cut(s) 364
FaiI YATR 9 cut(s) 170, 188, 336, 338, 364, 366, 415, 426, 440
FalI AAGNNNNNCTT 2 cut(s) 198, 230
Fnu4HI GCNGC 4 cut(s) 351, 454, 480, 506
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 351, 454, 480, 506
FspBI CTAG 1 cut(s) 377
GluI GCNGC 4 cut(s) 351, 454, 480, 506
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 3 cut(s) 316, 519, 528
HapII CCGG 1 cut(s) 393
HgaI GACGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 3 cut(s) 137, 373, 556
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 39, 296
Hpy188I TCNGA 2 cut(s) 136, 547
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 39, 296
HpyAV CCTTC 2 cut(s) 327, 467
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 4, 73, 362, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 525
HpyF3I CTNAG 3 cut(s) 93, 215, 236
Hsp92I GRCGYC 1 cut(s) 456
Kzo9I GATC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 362, 466, 492
MaeI CTAG 1 cut(s) 377
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 74, 254, 482
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 6 cut(s) 75, 79, 114, 147, 406, 493
MluNI TGGCCA 1 cut(s) 519
MnlI CCTC 3 cut(s) 134, 175, 293
Mox20I TGGCCA 1 cut(s) 519
Mph1103I ATGCAT 1 cut(s) 364
MscI TGGCCA 1 cut(s) 519
MseI TTAA 4 cut(s) 56, 78, 153, 179
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 3 cut(s) 12, 393, 420
Mva1269I GAATGC 2 cut(s) 71, 364
MvaI CCWGG 2 cut(s) 12, 420
MwoI GCNNNNNNNGC 2 cut(s) 359, 525
NciI CCSGG 1 cut(s) 393
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 364
PctI GAATGC 2 cut(s) 71, 364
PfeI GAWTC 2 cut(s) 137, 373
PkrI GCNGC 4 cut(s) 352, 455, 481, 507
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 10, 418
PspGI CCWGG 2 cut(s) 10, 418
PspN4I GGNNCC 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 220, 389
RsaNI GTAC 2 cut(s) 219, 388
SaqAI TTAA 4 cut(s) 56, 78, 153, 179
SatI GCNGC 4 cut(s) 351, 454, 480, 506
Sau3AI GATC 1 cut(s) 196
ScaI AGTACT 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 12, 393, 420
SetI ASST 6 cut(s) 36, 106, 132, 237, 285, 478
SfiI GGCCNNNNNGGCC 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 6 cut(s) 75, 79, 114, 147, 406, 493
SsiI CCGC 1 cut(s) 453
SspI AATATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 10, 391, 418
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 199, 228
TaqII GACCGA 1 cut(s) 531
TasI AATT 6 cut(s) 75, 79, 114, 147, 406, 493
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 2 cut(s) 137, 373
Tru1I TTAA 4 cut(s) 56, 78, 153, 179
Tru9I TTAA 4 cut(s) 56, 78, 153, 179
TseI GCWGC 3 cut(s) 350, 479, 505
TspDTI ATGAA 3 cut(s) 150, 270, 371
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 493
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.