Rh1AG248800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000170
Physical Location & Seq
Forward (+)
46309652 .. 46310997
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG248800.1

Sequence Viewer

Length: 159 bp
ATGCCATCCCTCACAACTGCTCCCATACCAACTCTTCCTCGACGAACATCACAGGTAAACAATGCAGGTGTTAGTGGAACCATTACAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTATGGCTAAGGTGAGTTTAATTATCAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.34

Weight (kDa)

10.9

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 2 cut(s) 56, 113
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 83
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 56, 113
BisI GCNGC 2 cut(s) 117, 120
BlsI GCNGC 2 cut(s) 118, 121
BmiI GGNNCC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 132
BsaXI ACNNNNNCTCC 1 cut(s) 34
BseGI GGATG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 2 cut(s) 56, 113
BspPI GGATC 1 cut(s) 83
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 116, 128
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 1 cut(s) 5
BveI ACCTGC 2 cut(s) 56, 113
CaiI CAGNNNCTG 1 cut(s) 92
CseI GACGC 1 cut(s) 104
CviJI RGCY 2 cut(s) 119, 131
CviKI_1 RGCY 2 cut(s) 119, 131
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
FaiI YATR 2 cut(s) 26, 128
Fnu4HI GCNGC 2 cut(s) 117, 120
Fsp4HI GCNGC 2 cut(s) 117, 120
GluI GCNGC 2 cut(s) 117, 120
HgaI GACGC 1 cut(s) 104
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 65, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 128
HpyF3I CTNAG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 38, 51, 105, 108
Lsp1109I GCAGC 1 cut(s) 128
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 26
MflI RGATCY 1 cut(s) 88
MluCI AATT 1 cut(s) 144
MnlI CCTC 2 cut(s) 20, 48
MseI TTAA 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 116, 128
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 118, 121
PspN4I GGNNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 88
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 117, 120
Sau3AI GATC 1 cut(s) 88
SetI ASST 4 cut(s) 57, 70, 127, 138
SgeI CNNG 5 cut(s) 51, 65, 78, 104, 135
Sse9I AATT 1 cut(s) 144
SsiI CCGC 1 cut(s) 120
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 144
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseI GCWGC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.