MD01G1053300.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000170
Physical Location & Seq
Forward (+)
15825543 .. 15827115
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1053300.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGCAGAGGCGACGAAGAGGTATGCAGTTGTGACAGGGGCAAACAAAGGAATTGGATTTGCAACTGTTAGGCAGTTGGCTTCAAATGGGACCTTAGTAGTTTTAACTGCCAGAGATGAGAAGAGAGGTCTTGAAGCTGTTGAAAAATTGAAACAGTTTGGCGTCTCTGATCGCGTGGTTTTTCACCAGCTCGACATAACGGATTCTGCTAGCATTGCTTCCCTTGCAGATTTTGTCAAAACTCAATTTGGAAAACTTGATATTTTGGTAAACAATGCAGGAGTTATCGGAAGCATACTAAACGGCGAAGCTTTTAGAGCTATTCCGGGTAAGAAGCTTGAAGATATTGATTGGAGTGAAATAGCAACACCAAACTACGAGTTAGGAGAAAAGTGTCTAGAAACAAACTATCATGGTACGAAAAGAGTGATTGAAGCACTTCTGCCCCTCCTCCAGCTATCCGATTCTCCAAGGCTTGTTATTGTTTCTTCTTATGTTGGTCAATTAATGTTTTTTTCAGATGGACGGGCTAATGGGGTACTGAGTGATTCTGAGAGCCTCACAGAAGAGAGAATAGATGGAGTATTGAGTGAGTTTTTAGAAGATTTTAAACAAGGTCTGGTAGAAGCCAAAAGCTGGCCTCCAATCCTTCCAGCCTACTCAGTCTCGAAAGCAGCCTTGAACGCTTACACCAGAATTCTAGCCAAAAGGTGGCCCAATTTCTGCATCAATTGTGTCTGTCCTGGATTTGTCAAAACAGATATAACCTGCAATTCGGGCATCTTAACCATCGACGAAGGTGCGGAAAGCGTTGTCAGGTTGGCGCTGCTCCCCAATGGCGGACCTACTGGCCAATACTTCATCCGGAAAGAAGCGACACCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

296

Amino Acids

32.11

Weight (kDa)

5.44

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 169 9.6e-26 short chain dehydrogenase
KR PF08659 10 - 97 1e-07 KR domain
adh_short_C2 PF13561 13 - 168 1.8e-17 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 217 - 271 3.9e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 776
AccB7I CCANNNNNTGG 2 cut(s) 636, 711
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 864
AciI CCGC 2 cut(s) 803, 840
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 418, 540
AfiI CCNNNNNNNGG 3 cut(s) 636, 711, 839
AgsI TTSAA 7 cut(s) 84, 134, 143, 151, 341, 434, 682
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 7 cut(s) 137, 190, 311, 320, 337, 457, 636
AluI AGCT 7 cut(s) 137, 190, 311, 320, 337, 457, 636
Alw26I GTCTC 2 cut(s) 169, 670
Aor13HI TCCGGA 1 cut(s) 864
AoxI GGCC 3 cut(s) 638, 713, 850
ApeKI GCWGC 2 cut(s) 674, 826
ApoI RAATTY 1 cut(s) 696
AseI ATTAAT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 1 cut(s) 826
AspS9I GGNCC 3 cut(s) 90, 714, 842
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 2 cut(s) 90, 842
BalI TGGCCA 1 cut(s) 852
BbvI GCAGC 2 cut(s) 686, 813
BccI CCATC 3 cut(s) 515, 572, 797
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 1 cut(s) 744
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 169, 670
BfaI CTAG 3 cut(s) 210, 398, 701
BfoI RGCGCY 1 cut(s) 827
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 2 cut(s) 675, 827
BlsI GCNGC 2 cut(s) 676, 828
Bme1390I CCNGG 2 cut(s) 327, 744
Bme18I GGWCC 2 cut(s) 90, 842
BmgT120I GGNCC 3 cut(s) 90, 714, 842
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 327, 744
BmsI GCATC 2 cut(s) 735, 789
BmtI GCTAGC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 470
BsaWI WCCGGW 1 cut(s) 864
Bsc4I CCNNNNNNNGG 3 cut(s) 636, 711, 839
Bse1I ACTGG 1 cut(s) 853
Bse3DI GCAATG 1 cut(s) 213
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 861
BseLI CCNNNNNNNGG 3 cut(s) 636, 711, 839
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 533, 543, 675
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 686, 813
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 640, 715, 852
BsiSI CCGG 2 cut(s) 326, 865
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 636, 711, 839
BsmAI GTCTC 2 cut(s) 169, 670
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 640, 715, 852
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 2 cut(s) 803, 840
BspANI GGCC 3 cut(s) 640, 715, 852
BspCNI CTCAG 3 cut(s) 534, 544, 674
BspEI TCCGGA 1 cut(s) 864
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 776
BspOI GCTAGC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 853
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 2 cut(s) 67, 156
Bst6I CTCTTC 3 cut(s) 11, 116, 561
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 211, 638
BstDEI CTNAG 4 cut(s) 94, 542, 552, 661
BstF5I GGATG 1 cut(s) 861
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 169, 670
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 5 cut(s) 215, 224, 317, 683, 777
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 2 cut(s) 325, 742
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 686, 813
BsuRI GGCC 3 cut(s) 640, 715, 852
BtsCI GGATG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 2 cut(s) 211, 638
CfoI GCGC 1 cut(s) 826
Cfr13I GGNCC 3 cut(s) 90, 714, 842
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 417, 539
CviAII CATG 1 cut(s) 413
CviQI GTAC 2 cut(s) 417, 539
DdeI CTNAG 4 cut(s) 94, 542, 552, 661
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
DraI TTTAAA 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 3 cut(s) 11, 116, 561
EarI CTCTTC 3 cut(s) 11, 116, 561
EciI GGCGGA 1 cut(s) 855
Eco130I CCWWGG 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 90, 842
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 416
FaiI YATR 6 cut(s) 24, 197, 296, 414, 495, 764
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 675, 827
FokI GGATG 1 cut(s) 848
Fsp4HI GCNGC 2 cut(s) 675, 827
FspBI CTAG 3 cut(s) 210, 398, 701
GlaI GCGC 1 cut(s) 825
GluI GCNGC 2 cut(s) 675, 827
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 3 cut(s) 640, 715, 852
HapII CCGG 2 cut(s) 326, 865
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 826
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HindIII AAGCTT 2 cut(s) 309, 335
HinfI GANTC 3 cut(s) 203, 464, 548
HpaII CCGG 2 cut(s) 326, 865
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 5 cut(s) 169, 290, 463, 520, 553
Hpy188III TCNNGA 4 cut(s) 131, 398, 667, 865
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 2 cut(s) 16, 797
HpyAV CCTTC 2 cut(s) 659, 791
HpyCH4III ACNGT 2 cut(s) 67, 156
HpyCH4V TGCA 6 cut(s) 26, 62, 227, 278, 726, 771
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 224, 317, 683, 777
HpyF3I CTNAG 4 cut(s) 94, 542, 552, 661
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 1 cut(s) 824
Kpn2I TCCGGA 1 cut(s) 864
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 2 cut(s) 686, 813
LweI GCATC 2 cut(s) 735, 789
MaeI CTAG 3 cut(s) 210, 398, 701
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 6 cut(s) 28, 133, 353, 480, 578, 614
MfeI CAATTG 1 cut(s) 730
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 8 cut(s) 51, 146, 245, 503, 696, 718, 730, 772
MluNI TGGCCA 1 cut(s) 852
MnlI CCTC 6 cut(s) 12, 119, 458, 461, 569, 651
Mox20I TGGCCA 1 cut(s) 852
MroI TCCGGA 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 852
MseI TTAA 5 cut(s) 104, 506, 609, 785, 886
Msp20I TGGCCA 1 cut(s) 852
MspI CCGG 2 cut(s) 326, 865
MspR9I CCNGG 2 cut(s) 327, 744
MunI CAATTG 1 cut(s) 730
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 215, 224, 317, 683, 777
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 203, 464, 548
PflMI CCANNNNNTGG 2 cut(s) 636, 711
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 2 cut(s) 676, 828
PpuMI RGGWCCY 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 3 cut(s) 90, 714, 842
PspPPI RGGWCCY 1 cut(s) 90
RsaI GTAC 2 cut(s) 418, 540
RsaNI GTAC 2 cut(s) 417, 539
SaqAI TTAA 5 cut(s) 104, 506, 609, 785, 886
SatI GCNGC 2 cut(s) 675, 827
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 3 cut(s) 90, 714, 842
ScrFI CCNGG 2 cut(s) 327, 744
SfaNI GCATC 2 cut(s) 735, 789
SinI GGWCC 2 cut(s) 90, 842
Sse9I AATT 8 cut(s) 51, 146, 245, 503, 696, 718, 730, 772
SsiI CCGC 2 cut(s) 803, 840
SspMI CTAG 3 cut(s) 210, 398, 701
StyD4I CCNGG 2 cut(s) 325, 742
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 67, 156
TaqI TCGA 3 cut(s) 192, 668, 792
TasI AATT 8 cut(s) 51, 146, 245, 503, 696, 718, 730, 772
TfiI GAWTC 3 cut(s) 203, 464, 548
Tru1I TTAA 5 cut(s) 104, 506, 609, 785, 886
Tru9I TTAA 5 cut(s) 104, 506, 609, 785, 886
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 674, 826
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 850
TspGWI ACGGA 1 cut(s) 215
Van91I CCANNNNNTGG 2 cut(s) 636, 711
VpaK11BI GGWCC 2 cut(s) 90, 842
VspI ATTAAT 1 cut(s) 506
XapI RAATTY 1 cut(s) 696
XbaI TCTAGA 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 210, 398, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.